Wall clock time and date at job start Sun Mar 29 2020 21:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.36869 * 2 1 4 4 C 1.54380 * 110.32394 * 122.17890 * 2 1 3 5 5 N 1.48562 * 104.59484 * 142.75318 * 4 2 1 6 6 C 1.46901 * 110.99845 * 200.96022 * 5 4 2 7 7 C 1.50703 * 109.46936 * 185.28721 * 6 5 4 8 8 H 1.07998 * 120.00303 * 0.02562 * 7 6 5 9 9 C 1.37882 * 120.00033 * 179.97438 * 7 6 5 10 10 N 1.31512 * 119.99525 * 0.02562 * 9 7 6 11 11 Si 1.86788 * 120.00105 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.47209 * 60.00057 * 11 9 7 13 13 H 1.48503 * 109.47406 * 300.00009 * 11 9 7 14 14 H 1.48497 * 109.47397 * 180.02562 * 11 9 7 15 15 C 1.48567 * 104.21808 * 320.51476 * 5 4 2 16 16 C 1.54255 * 110.32655 * 237.81647 * 2 1 3 17 17 H 1.09002 * 110.32433 * 122.20774 * 16 2 1 18 18 C 1.50707 * 110.32232 * 0.02562 * 16 2 1 19 19 O 1.20822 * 119.99710 * 274.89781 * 18 16 2 20 20 O 1.34226 * 119.99896 * 94.89657 * 18 16 2 21 21 H 1.08999 * 109.47131 * 183.60795 * 1 2 3 22 22 H 1.09005 * 109.47115 * 303.60662 * 1 2 3 23 23 H 1.08998 * 109.47329 * 63.60931 * 1 2 3 24 24 H 1.08993 * 110.41414 * 23.96827 * 4 2 1 25 25 H 1.09004 * 110.41038 * 261.52558 * 4 2 1 26 26 H 1.08999 * 109.47401 * 65.29090 * 6 5 4 27 27 H 1.08999 * 109.47549 * 305.28979 * 6 5 4 28 28 H 0.96998 * 120.00645 * 0.02562 * 10 9 7 29 29 H 1.09002 * 110.40732 * 158.26524 * 15 5 4 30 30 H 1.09002 * 110.41248 * 280.70477 * 15 5 4 31 31 H 0.96699 * 116.99910 * 180.02562 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0219 0.0000 4 6 2.0662 -0.7710 1.2253 5 7 3.2694 -1.4827 0.7226 6 6 3.6069 -2.6216 1.5870 7 6 4.9012 -3.2383 1.1228 8 1 5.4213 -2.8253 0.2712 9 6 5.4220 -4.3292 1.7860 10 7 4.7889 -4.8317 2.8234 11 14 7.0266 -5.0931 1.2111 12 1 8.1102 -4.0800 1.2809 13 1 6.8775 -5.5627 -0.1898 14 1 7.3678 -6.2444 2.0848 15 6 2.8806 -1.9421 -0.6357 16 6 2.0658 -0.7704 -1.2242 17 1 2.7082 -0.1268 -1.8252 18 6 0.9224 -1.2928 -2.0555 19 8 0.4054 -2.3485 -1.7761 20 8 0.4783 -0.5852 -3.1061 21 1 -0.3633 -1.0256 0.0647 22 1 -0.3633 0.5688 0.8559 23 1 -0.3634 0.4568 -0.9205 24 1 1.3229 -1.4847 1.5805 25 1 2.3394 -0.0778 2.0209 26 1 2.8113 -3.3649 1.5357 27 1 3.7167 -2.2773 2.6153 28 1 3.9554 -4.4353 3.1217 29 1 3.7671 -2.1308 -1.2414 30 1 2.2648 -2.8393 -0.5719 31 1 -0.2574 -0.9607 -3.6088 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251879906.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:55 Heat of formation + Delta-G solvation = -123.870664 kcal Electronic energy + Delta-G solvation = -14638.100785 eV Core-core repulsion = 12110.864668 eV Total energy + Delta-G solvation = -2527.236117 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.89095 -39.55367 -37.10993 -35.83979 -33.79547 -31.23039 -28.88754 -26.41604 -25.52911 -23.51276 -22.17248 -20.68423 -19.12692 -18.86324 -17.74526 -17.34768 -16.49430 -15.92279 -15.66208 -15.34681 -14.87012 -14.28115 -14.07125 -13.81457 -13.52923 -13.09051 -12.91859 -12.79028 -12.57963 -12.43381 -12.08554 -11.97002 -11.90406 -11.82121 -11.41345 -10.81545 -10.60934 -9.43120 -8.72983 -6.43555 1.10885 1.52287 1.61404 1.80892 1.97975 2.54696 3.10596 3.26312 3.36009 3.46048 3.88484 4.15584 4.26674 4.38337 4.45621 4.56403 4.59860 4.70468 4.74206 4.78771 4.90904 4.98783 5.07071 5.23657 5.54378 5.64337 5.84931 6.09842 6.31588 6.52676 6.96052 7.37797 8.66499 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.045149 B = 0.007793 C = 0.007213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.020338 B = 3592.311743 C = 3880.769515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.068 4.068 3 H 0.124 0.876 4 C 0.025 3.975 5 N -0.505 5.505 6 C 0.184 3.816 7 C -0.602 4.602 8 H 0.058 0.942 9 C -0.039 4.039 10 N -0.937 5.937 11 Si 1.123 2.877 12 H -0.265 1.265 13 H -0.270 1.270 14 H -0.283 1.283 15 C 0.056 3.944 16 C -0.084 4.084 17 H 0.138 0.862 18 C 0.502 3.498 19 O -0.552 6.552 20 O -0.502 6.502 21 H 0.035 0.965 22 H 0.084 0.916 23 H 0.078 0.922 24 H 0.022 0.978 25 H 0.092 0.908 26 H -0.046 1.046 27 H 0.004 0.996 28 H 0.252 0.748 29 H 0.079 0.921 30 H 0.025 0.975 31 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.697 11.712 -10.359 17.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.087 4.087 3 H 0.142 0.858 4 C -0.103 4.103 5 N -0.229 5.229 6 C 0.057 3.943 7 C -0.640 4.640 8 H 0.076 0.924 9 C -0.236 4.236 10 N -0.574 5.574 11 Si 0.943 3.057 12 H -0.190 1.190 13 H -0.195 1.195 14 H -0.208 1.208 15 C -0.073 4.073 16 C -0.104 4.104 17 H 0.156 0.844 18 C 0.346 3.654 19 O -0.443 6.443 20 O -0.315 6.315 21 H 0.054 0.946 22 H 0.103 0.897 23 H 0.097 0.903 24 H 0.040 0.960 25 H 0.110 0.890 26 H -0.028 1.028 27 H 0.022 0.978 28 H 0.061 0.939 29 H 0.097 0.903 30 H 0.043 0.957 31 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges -5.974 10.742 -9.754 15.691 hybrid contribution -2.515 -0.096 -0.130 2.520 sum -8.490 10.646 -9.884 16.826 Atomic orbital electron populations 1.22065 0.93467 1.01599 1.04100 1.21875 0.96367 1.00312 0.90110 0.85783 1.23366 0.91111 0.97228 0.98590 1.65377 1.31665 1.23740 1.02085 1.19691 0.94925 0.87242 0.92445 1.22278 1.08174 1.16223 1.17360 0.92397 1.27530 1.06840 0.95411 0.93833 1.70926 1.17596 1.42875 1.26025 0.82871 0.71004 0.75874 0.75943 1.19004 1.19512 1.20816 1.22858 0.97839 0.94912 0.91676 1.21930 0.93601 0.98440 0.96420 0.84397 1.23144 0.82905 0.81109 0.78266 1.90725 1.58457 1.25118 1.69954 1.84508 1.53390 1.52853 1.40745 0.94592 0.89704 0.90292 0.95969 0.89018 1.02820 0.97752 0.93890 0.90259 0.95693 0.71133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.54 7.96 71.98 0.57 -2.96 16 2 C -0.07 -1.78 3.65 -9.90 -0.04 -1.81 16 3 H 0.12 2.53 8.14 -2.39 -0.02 2.51 16 4 C 0.03 0.90 6.03 86.45 0.52 1.42 16 5 N -0.51 -22.57 5.36 -886.02 -4.75 -27.32 16 6 C 0.18 10.21 3.88 85.56 0.33 10.55 16 7 C -0.60 -35.58 8.82 25.60 0.23 -35.35 16 8 H 0.06 3.34 7.61 -2.91 -0.02 3.32 16 9 C -0.04 -2.32 5.46 84.66 0.46 -1.86 16 10 N -0.94 -59.68 13.65 21.45 0.29 -59.39 16 11 Si 1.12 51.30 29.90 68.60 2.05 53.35 16 12 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 13 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 14 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 15 C 0.06 2.26 5.46 86.45 0.47 2.73 16 16 C -0.08 -2.43 3.55 -10.65 -0.04 -2.46 16 17 H 0.14 3.19 8.14 -2.39 -0.02 3.17 16 18 C 0.50 13.94 5.24 71.24 0.37 14.31 16 19 O -0.55 -19.94 15.67 21.98 0.34 -19.60 16 20 O -0.50 -9.30 13.15 -51.38 -0.68 -9.98 16 21 H 0.03 1.02 6.95 -2.39 -0.02 1.01 16 22 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 23 H 0.08 1.49 7.26 -2.39 -0.02 1.47 16 24 H 0.02 0.86 7.66 -2.39 -0.02 0.84 16 25 H 0.09 2.98 8.14 -2.39 -0.02 2.96 16 26 H -0.05 -2.78 7.75 -2.39 -0.02 -2.79 16 27 H 0.00 0.26 8.00 -2.39 -0.02 0.24 16 28 H 0.25 16.35 7.22 -92.71 -0.67 15.68 16 29 H 0.08 3.26 7.94 -2.39 -0.02 3.24 16 30 H 0.02 1.17 6.59 -2.39 -0.02 1.16 16 31 H 0.43 4.19 9.10 -74.06 -0.67 3.52 16 Total: -1.00 -74.52 257.76 0.70 -73.82 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: 0.55 Total: 4.56 kcal Atomic # 6 Polarization: -18.34 SS G_CDS: 2.89 Total: -15.45 kcal Atomic # 7 Polarization: -82.26 SS G_CDS: -4.46 Total: -86.71 kcal Atomic # 8 Polarization: -29.24 SS G_CDS: -0.33 Total: -29.57 kcal Atomic # 14 Polarization: 51.30 SS G_CDS: 2.05 Total: 53.35 kcal Total: -74.52 0.70 -73.82 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251879906.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.050 kcal (2) G-P(sol) polarization free energy of solvation -74.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds