Wall clock time and date at job start Sun Mar 29 2020 21:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34224 * 117.00572 * 2 1 4 4 O 1.20835 * 119.99735 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00487 * 180.02562 * 3 2 1 6 6 H 1.08995 * 110.89204 * 56.11282 * 5 3 2 7 7 C 1.54908 * 111.00213 * 292.19037 * 5 3 2 8 8 N 1.47423 * 104.83414 * 204.91883 * 7 5 3 9 9 C 1.36939 * 125.64762 * 204.17650 * 8 7 5 10 10 H 1.08000 * 120.00367 * 179.97438 * 9 8 7 11 11 C 1.38817 * 119.99861 * 359.94376 * 9 8 7 12 12 N 1.31617 * 120.00262 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99633 * 180.02562 * 11 9 8 14 14 H 1.48507 * 109.47475 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47334 * 120.00339 * 13 11 9 16 16 H 1.48505 * 109.47131 * 240.00198 * 13 11 9 17 17 C 1.47016 * 108.70509 * 24.12533 * 8 7 5 18 18 C 1.54330 * 107.27136 * 358.94696 * 17 8 7 19 19 H 1.08999 * 110.72045 * 96.16167 * 18 17 8 20 20 C 1.53002 * 110.87078 * 219.37195 * 18 17 8 21 21 H 1.09002 * 109.47379 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46782 * 60.00258 * 1 2 3 23 23 H 1.09004 * 109.47085 * 300.00378 * 1 2 3 24 24 H 1.09007 * 110.36931 * 323.75564 * 7 5 3 25 25 H 1.09003 * 110.36781 * 86.07951 * 7 5 3 26 26 H 0.96991 * 119.99979 * 179.97438 * 12 11 9 27 27 H 1.08993 * 109.88785 * 239.52610 * 17 8 7 28 28 H 1.09002 * 110.01139 * 118.42830 * 17 8 7 29 29 H 1.09003 * 109.46852 * 173.60925 * 20 18 17 30 30 H 1.09002 * 109.46879 * 293.60762 * 20 18 17 31 31 H 1.09001 * 109.46878 * 53.60744 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 1 3.9839 0.7283 -0.8462 7 6 4.1499 0.7581 1.3381 8 7 5.4587 1.4253 1.4619 9 6 6.5217 0.9677 2.1939 10 1 7.4421 1.5320 2.2203 11 6 6.4160 -0.2213 2.9026 12 7 5.2943 -0.9090 2.8705 13 14 7.8659 -0.8450 3.9017 14 1 9.0008 0.1041 3.7730 15 1 7.4722 -0.9560 5.3292 16 1 8.2776 -2.1794 3.3966 17 6 5.4340 2.6626 0.6683 18 6 4.0460 2.7504 -0.0005 19 1 3.3732 3.3745 0.5877 20 6 4.1626 3.2817 -1.4306 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 0.5139 0.8900 24 1 3.5012 1.0384 2.1681 25 1 4.2774 -0.3239 1.3040 26 1 5.2206 -1.7400 3.3654 27 1 6.2117 2.6292 -0.0947 28 1 5.5880 3.5249 1.3170 29 1 3.1894 3.2278 -1.9186 30 1 4.5003 4.3178 -1.4068 31 1 4.8811 2.6779 -1.9850 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251932520.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:58 Heat of formation + Delta-G solvation = -65.789990 kcal Electronic energy + Delta-G solvation = -14749.655266 eV Core-core repulsion = 12224.937716 eV Total energy + Delta-G solvation = -2524.717550 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.16440 -37.58185 -35.90270 -33.11762 -30.36341 -29.72782 -27.20540 -25.70163 -24.08965 -21.79905 -20.12359 -19.15308 -17.23413 -16.91720 -16.15268 -15.89186 -14.93019 -14.05650 -13.73786 -13.09746 -12.99812 -12.66493 -12.55543 -12.12476 -11.86235 -11.64945 -11.28041 -11.07015 -10.81862 -10.48823 -10.39152 -10.17021 -10.05257 -9.94454 -9.78992 -9.51980 -8.69701 -6.89081 -5.69190 -3.11241 2.66947 3.16366 3.39522 3.44897 3.47547 4.47402 5.04294 5.28303 5.30667 5.34208 5.38049 5.51735 5.57526 5.68353 5.84573 5.95228 6.07513 6.17234 6.22577 6.42208 6.54593 6.69386 6.79337 6.97922 7.32536 7.58479 7.76733 8.20652 8.28578 9.17004 9.78135 10.42038 11.35794 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.034619 B = 0.009727 C = 0.007853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.609625 B = 2877.939097 C = 3564.694180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.352 6.352 3 C 0.481 3.519 4 O -0.521 6.521 5 C -0.113 4.113 6 H 0.107 0.893 7 C 0.172 3.828 8 N -0.604 5.604 9 C -0.223 4.223 10 H 0.081 0.919 11 C -0.012 4.012 12 N -0.923 5.923 13 Si 0.917 3.083 14 H -0.280 1.280 15 H -0.290 1.290 16 H -0.290 1.290 17 C 0.138 3.862 18 C -0.088 4.088 19 H 0.083 0.917 20 C -0.137 4.137 21 H 0.097 0.903 22 H 0.057 0.943 23 H 0.059 0.941 24 H 0.016 0.984 25 H 0.118 0.882 26 H 0.254 0.746 27 H 0.030 0.970 28 H 0.026 0.974 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.811 2.601 -6.789 9.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.268 6.268 3 C 0.325 3.675 4 O -0.410 6.410 5 C -0.133 4.133 6 H 0.124 0.876 7 C 0.047 3.953 8 N -0.330 5.330 9 C -0.351 4.351 10 H 0.099 0.901 11 C -0.207 4.207 12 N -0.571 5.571 13 Si 0.748 3.252 14 H -0.205 1.205 15 H -0.217 1.217 16 H -0.217 1.217 17 C 0.012 3.988 18 C -0.107 4.107 19 H 0.102 0.898 20 C -0.194 4.194 21 H 0.115 0.885 22 H 0.075 0.925 23 H 0.078 0.922 24 H 0.034 0.966 25 H 0.136 0.864 26 H 0.065 0.935 27 H 0.047 0.953 28 H 0.044 0.956 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.960 2.721 -6.640 9.328 hybrid contribution 0.362 -0.241 0.569 0.717 sum -5.598 2.480 -6.071 8.622 Atomic orbital electron populations 1.23180 0.77521 1.03214 1.01990 1.86600 1.22472 1.33823 1.83943 1.23831 0.92038 0.80815 0.70775 1.90582 1.67374 1.36500 1.46545 1.22748 0.85816 0.99444 1.05310 0.87552 1.21866 0.85056 1.01207 0.87181 1.44463 1.11569 1.21140 1.55794 1.19156 0.91385 1.03730 1.20859 0.90070 1.24823 0.97609 0.97699 1.00598 1.69737 1.24501 1.16831 1.46041 0.85957 0.81224 0.78516 0.79546 1.20476 1.21736 1.21672 1.21420 0.93458 0.90280 0.93621 1.22122 0.97834 0.93856 0.96895 0.89830 1.21733 1.01221 1.00726 0.95770 0.88472 0.92458 0.92186 0.96599 0.86398 0.93543 0.95252 0.95587 0.92968 0.92644 0.92612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.46 10.56 101.05 1.07 1.53 16 2 O -0.35 -6.28 10.56 -39.24 -0.41 -6.69 16 3 C 0.48 9.29 7.27 36.00 0.26 9.55 16 4 O -0.52 -10.56 15.46 -18.76 -0.29 -10.85 16 5 C -0.11 -2.25 2.99 -89.62 -0.27 -2.52 16 6 H 0.11 2.00 8.05 -51.93 -0.42 1.58 16 7 C 0.17 4.25 5.35 -2.53 -0.01 4.23 16 8 N -0.60 -15.59 3.39 -170.07 -0.58 -16.16 16 9 C -0.22 -6.20 10.27 -15.06 -0.15 -6.35 16 10 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 11 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 12 N -0.92 -26.75 10.09 55.49 0.56 -26.19 16 13 Si 0.92 21.92 29.55 -169.99 -5.02 16.90 16 14 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 15 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 16 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 17 C 0.14 2.92 6.84 -3.06 -0.02 2.90 16 18 C -0.09 -1.65 2.67 -88.78 -0.24 -1.89 16 19 H 0.08 1.64 7.39 -51.93 -0.38 1.26 16 20 C -0.14 -2.08 9.17 37.16 0.34 -1.74 16 21 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 22 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 23 H 0.06 0.79 8.13 -51.93 -0.42 0.37 16 24 H 0.02 0.43 8.03 -51.93 -0.42 0.01 16 25 H 0.12 3.22 5.87 -51.93 -0.30 2.91 16 26 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 27 H 0.03 0.60 7.78 -51.93 -0.40 0.19 16 28 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.80 8.07 -51.93 -0.42 0.38 16 LS Contribution 261.15 15.07 3.94 3.94 Total: -1.00 -30.76 261.15 -5.36 -36.12 By element: Atomic # 1 Polarization: 2.07 SS G_CDS: -4.43 Total: -2.35 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: 0.88 Total: 5.29 kcal Atomic # 7 Polarization: -42.33 SS G_CDS: -0.02 Total: -42.35 kcal Atomic # 8 Polarization: -16.83 SS G_CDS: -0.70 Total: -17.54 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -30.76 -5.36 -36.12 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251932520.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.674 kcal (2) G-P(sol) polarization free energy of solvation -30.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds