Wall clock time and date at job start Sun Mar 29 2020 21:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34224 * 117.00572 * 2 1 4 4 O 1.20835 * 119.99735 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00487 * 180.02562 * 3 2 1 6 6 H 1.08995 * 110.89204 * 56.11282 * 5 3 2 7 7 C 1.54908 * 111.00213 * 292.19037 * 5 3 2 8 8 N 1.47423 * 104.83414 * 204.91883 * 7 5 3 9 9 C 1.36939 * 125.64762 * 204.17650 * 8 7 5 10 10 H 1.08000 * 120.00367 * 179.97438 * 9 8 7 11 11 C 1.38817 * 119.99861 * 359.94376 * 9 8 7 12 12 N 1.31617 * 120.00262 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99633 * 180.02562 * 11 9 8 14 14 H 1.48507 * 109.47475 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47334 * 120.00339 * 13 11 9 16 16 H 1.48505 * 109.47131 * 240.00198 * 13 11 9 17 17 C 1.47016 * 108.70509 * 24.12533 * 8 7 5 18 18 C 1.54330 * 107.27136 * 358.94696 * 17 8 7 19 19 H 1.08999 * 110.72045 * 96.16167 * 18 17 8 20 20 C 1.53002 * 110.87078 * 219.37195 * 18 17 8 21 21 H 1.09002 * 109.47379 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46782 * 60.00258 * 1 2 3 23 23 H 1.09004 * 109.47085 * 300.00378 * 1 2 3 24 24 H 1.09007 * 110.36931 * 323.75564 * 7 5 3 25 25 H 1.09003 * 110.36781 * 86.07951 * 7 5 3 26 26 H 0.96991 * 119.99979 * 179.97438 * 12 11 9 27 27 H 1.08993 * 109.88785 * 239.52610 * 17 8 7 28 28 H 1.09002 * 110.01139 * 118.42830 * 17 8 7 29 29 H 1.09003 * 109.46852 * 173.60925 * 20 18 17 30 30 H 1.09002 * 109.46879 * 293.60762 * 20 18 17 31 31 H 1.09001 * 109.46878 * 53.60744 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 1 3.9839 0.7283 -0.8462 7 6 4.1499 0.7581 1.3381 8 7 5.4587 1.4253 1.4619 9 6 6.5217 0.9677 2.1939 10 1 7.4421 1.5320 2.2203 11 6 6.4160 -0.2213 2.9026 12 7 5.2943 -0.9090 2.8705 13 14 7.8659 -0.8450 3.9017 14 1 9.0008 0.1041 3.7730 15 1 7.4722 -0.9560 5.3292 16 1 8.2776 -2.1794 3.3966 17 6 5.4340 2.6626 0.6683 18 6 4.0460 2.7504 -0.0005 19 1 3.3732 3.3745 0.5877 20 6 4.1626 3.2817 -1.4306 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 0.5139 0.8900 24 1 3.5012 1.0384 2.1681 25 1 4.2774 -0.3239 1.3040 26 1 5.2206 -1.7400 3.3654 27 1 6.2117 2.6292 -0.0947 28 1 5.5880 3.5249 1.3170 29 1 3.1894 3.2278 -1.9186 30 1 4.5003 4.3178 -1.4068 31 1 4.8811 2.6779 -1.9850 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251932520.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:57 Heat of formation + Delta-G solvation = -84.719840 kcal Electronic energy + Delta-G solvation = -14750.476126 eV Core-core repulsion = 12224.937716 eV Total energy + Delta-G solvation = -2525.538410 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.66911 -39.24379 -37.40936 -35.01031 -32.23319 -31.32433 -28.49517 -27.48001 -25.79788 -23.46466 -21.85650 -20.71053 -19.02102 -18.58567 -17.69888 -17.39765 -16.79677 -15.67049 -15.47165 -14.61323 -14.49521 -14.22442 -14.10501 -13.69786 -13.48744 -13.02238 -12.91871 -12.84058 -12.64342 -12.12601 -11.91082 -11.81391 -11.70390 -11.66849 -11.45742 -11.29948 -10.77838 -8.94236 -7.79585 -5.24987 1.12944 1.49635 1.50418 1.61027 1.80127 2.50545 3.32541 3.49220 3.65914 3.92354 3.98891 4.20040 4.32070 4.34285 4.43277 4.56753 4.61605 4.69153 4.85910 5.02904 5.07577 5.24301 5.34351 5.35868 5.46472 5.49681 5.71087 6.24347 6.72667 7.06728 7.73085 8.37155 9.23941 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.034619 B = 0.009727 C = 0.007853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.609625 B = 2877.939097 C = 3564.694180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.365 6.365 3 C 0.485 3.515 4 O -0.532 6.532 5 C -0.104 4.104 6 H 0.120 0.880 7 C 0.181 3.819 8 N -0.626 5.626 9 C -0.240 4.240 10 H 0.088 0.912 11 C -0.067 4.067 12 N -0.951 5.951 13 Si 0.984 3.016 14 H -0.265 1.265 15 H -0.294 1.294 16 H -0.289 1.289 17 C 0.134 3.866 18 C -0.078 4.078 19 H 0.072 0.928 20 C -0.128 4.128 21 H 0.130 0.870 22 H 0.071 0.929 23 H 0.057 0.943 24 H -0.018 1.018 25 H 0.089 0.911 26 H 0.250 0.750 27 H 0.045 0.955 28 H 0.027 0.973 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.602 3.063 -7.856 10.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.281 6.281 3 C 0.329 3.671 4 O -0.422 6.422 5 C -0.124 4.124 6 H 0.138 0.862 7 C 0.055 3.945 8 N -0.352 5.352 9 C -0.368 4.368 10 H 0.105 0.895 11 C -0.260 4.260 12 N -0.600 5.600 13 Si 0.812 3.188 14 H -0.189 1.189 15 H -0.221 1.221 16 H -0.216 1.216 17 C 0.009 3.991 18 C -0.097 4.097 19 H 0.091 0.909 20 C -0.185 4.185 21 H 0.148 0.852 22 H 0.090 0.910 23 H 0.075 0.925 24 H 0.000 1.000 25 H 0.107 0.893 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.045 0.955 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.755 3.205 -7.729 10.156 hybrid contribution 0.230 -0.388 0.913 1.019 sum -5.525 2.816 -6.816 9.215 Atomic orbital electron populations 1.23573 0.74793 1.05696 1.02570 1.86569 1.25190 1.32917 1.83426 1.23559 0.91713 0.81156 0.70636 1.90570 1.67540 1.36894 1.47163 1.22580 0.86679 1.00305 1.02865 0.86171 1.21479 0.84693 0.99590 0.88723 1.44766 1.11354 1.22882 1.56169 1.19548 0.92233 1.03966 1.21100 0.89453 1.25687 1.00217 0.98068 1.01982 1.69983 1.26325 1.16954 1.46750 0.84922 0.78519 0.77913 0.77418 1.18926 1.22140 1.21587 1.21615 0.95497 0.88431 0.93567 1.22069 0.95815 0.92848 0.99016 0.90921 1.21678 1.02040 1.01916 0.92911 0.85166 0.91040 0.92454 0.99990 0.89339 0.94061 0.93706 0.95483 0.92347 0.90611 0.91565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 10.56 113.37 1.20 1.85 16 2 O -0.37 -12.70 10.56 -51.36 -0.54 -13.25 16 3 C 0.49 18.39 7.27 71.23 0.52 18.90 16 4 O -0.53 -20.95 15.46 21.94 0.34 -20.61 16 5 C -0.10 -4.10 2.99 -10.15 -0.03 -4.13 16 6 H 0.12 4.38 8.05 -2.39 -0.02 4.36 16 7 C 0.18 9.14 5.35 86.85 0.46 9.61 16 8 N -0.63 -32.55 3.39 -691.99 -2.35 -34.90 16 9 C -0.24 -13.39 10.27 84.03 0.86 -12.52 16 10 H 0.09 4.63 7.83 -2.91 -0.02 4.60 16 11 C -0.07 -3.78 5.49 84.86 0.47 -3.32 16 12 N -0.95 -56.49 10.09 21.65 0.22 -56.27 16 13 Si 0.98 45.26 29.55 68.60 2.03 47.29 16 14 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 15 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 16 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 17 C 0.13 5.53 6.84 86.73 0.59 6.13 16 18 C -0.08 -2.83 2.67 -9.60 -0.03 -2.86 16 19 H 0.07 2.78 7.39 -2.39 -0.02 2.77 16 20 C -0.13 -3.50 9.17 71.98 0.66 -2.84 16 21 H 0.13 2.31 8.14 -2.39 -0.02 2.29 16 22 H 0.07 1.57 8.13 -2.39 -0.02 1.55 16 23 H 0.06 1.44 8.13 -2.38 -0.02 1.42 16 24 H -0.02 -1.00 8.03 -2.38 -0.02 -1.02 16 25 H 0.09 5.01 5.87 -2.39 -0.01 4.99 16 26 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 27 H 0.04 1.73 7.78 -2.39 -0.02 1.71 16 28 H 0.03 1.11 8.14 -2.39 -0.02 1.10 16 29 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.07 1.68 8.07 -2.39 -0.02 1.66 16 Total: -1.00 -66.24 261.15 5.50 -60.74 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: 1.10 Total: 6.19 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: 4.71 Total: 10.82 kcal Atomic # 7 Polarization: -89.04 SS G_CDS: -2.13 Total: -91.17 kcal Atomic # 8 Polarization: -33.65 SS G_CDS: -0.20 Total: -33.85 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -66.24 5.50 -60.74 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251932520.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.985 kcal (2) G-P(sol) polarization free energy of solvation -66.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds