Wall clock time and date at job start Sun Mar 29 2020 21:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09001 * 109.47940 * 2 1 4 4 C 1.53090 * 109.48724 * 120.03270 * 2 1 3 5 5 C 1.53184 * 109.16007 * 177.60045 * 4 2 1 6 6 H 1.08992 * 109.61456 * 183.11112 * 5 4 2 7 7 C 1.50698 * 109.54316 * 62.88216 * 5 4 2 8 8 O 1.21293 * 120.00006 * 0.44826 * 7 5 4 9 9 N 1.34777 * 119.99538 * 180.44169 * 7 5 4 10 10 C 1.37104 * 119.99773 * 179.72591 * 9 7 5 11 11 H 1.08002 * 119.99671 * 0.27660 * 10 9 7 12 12 C 1.38950 * 120.00030 * 180.27703 * 10 9 7 13 13 N 1.31413 * 119.99930 * 179.97438 * 12 10 9 14 14 Si 1.86800 * 119.99918 * 0.02562 * 12 10 9 15 15 H 1.48498 * 109.47112 * 89.99702 * 14 12 10 16 16 H 1.48498 * 109.47011 * 209.99970 * 14 12 10 17 17 H 1.48494 * 109.47201 * 329.99943 * 14 12 10 18 18 C 1.53181 * 109.03250 * 303.01695 * 5 4 2 19 19 C 1.53094 * 109.16559 * 56.98460 * 18 5 4 20 20 O 1.42904 * 109.47702 * 239.98327 * 2 1 3 21 21 H 1.09004 * 109.46717 * 180.02562 * 1 2 3 22 22 H 1.08994 * 109.47513 * 300.02140 * 1 2 3 23 23 H 1.09003 * 109.46952 * 60.02503 * 1 2 3 24 24 H 1.08994 * 109.52295 * 57.69489 * 4 2 1 25 25 H 1.08997 * 109.52372 * 297.50148 * 4 2 1 26 26 H 0.97001 * 120.00485 * 0.02562 * 9 7 5 27 27 H 0.96999 * 119.99993 * 179.97438 * 13 12 10 28 28 H 1.09002 * 109.51859 * 176.88502 * 18 5 4 29 29 H 1.09003 * 109.52511 * 297.07444 * 18 5 4 30 30 H 1.08996 * 109.48231 * 62.36816 * 19 18 5 31 31 H 1.08997 * 109.48011 * 182.40666 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0408 -0.7223 1.2494 5 6 3.5714 -0.7706 1.2119 6 1 3.9409 -1.3315 2.0702 7 6 4.1211 0.6320 1.2516 8 8 3.3649 1.5783 1.3128 9 7 5.4532 0.8348 1.2190 10 6 5.9532 2.1110 1.2494 11 1 5.2798 2.9536 1.3039 12 6 7.3263 2.3204 1.2101 13 7 7.8055 3.5437 1.2387 14 14 8.4909 0.8629 1.1151 15 1 8.7514 0.5294 -0.3083 16 1 9.7706 1.2075 1.7850 17 1 7.8765 -0.3067 1.7931 18 6 4.0179 -1.4596 -0.0813 19 6 3.4308 -0.7088 -1.2794 20 8 2.0066 -0.6740 -1.1666 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5141 0.8897 23 1 -0.3633 0.5135 -0.8902 24 1 1.6447 -1.7375 1.2707 25 1 1.7151 -0.1845 2.1398 26 1 6.0580 0.0780 1.1698 27 1 8.7640 3.6898 1.2117 28 1 5.1061 -1.4491 -0.1426 29 1 3.6618 -2.4898 -0.0868 30 1 3.8191 0.3095 -1.2960 31 1 3.7101 -1.2197 -2.2008 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259652594.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:27 Heat of formation + Delta-G solvation = -94.955756 kcal Electronic energy + Delta-G solvation = -14942.206473 eV Core-core repulsion = 12416.224200 eV Total energy + Delta-G solvation = -2525.982273 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.89087 -37.46638 -34.14161 -33.19317 -32.42177 -31.51671 -27.56974 -25.58993 -23.59210 -22.17133 -20.82244 -19.09653 -17.88059 -15.92915 -15.77766 -15.69675 -14.97415 -14.56847 -14.08853 -13.50809 -13.32908 -12.94990 -12.42207 -12.28444 -12.03467 -11.91442 -11.63497 -11.41758 -11.23786 -10.76884 -10.64670 -10.36078 -10.07405 -9.97595 -9.58437 -9.10969 -8.36504 -8.20084 -6.35525 -3.86851 2.99281 3.03225 3.11935 3.67485 4.06171 4.13416 4.56520 4.98518 5.10280 5.21889 5.26129 5.29619 5.58093 5.69801 5.77272 5.83810 5.91012 5.95706 6.04210 6.16228 6.24884 6.28254 6.36272 6.46054 6.65234 7.52687 7.63596 8.10848 8.54510 8.90235 9.38397 9.77937 10.77483 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.047200 B = 0.009314 C = 0.008640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.083416 B = 3005.451576 C = 3240.141708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.073 3.927 3 H 0.092 0.908 4 C -0.119 4.119 5 C -0.109 4.109 6 H 0.086 0.914 7 C 0.453 3.547 8 O -0.574 6.574 9 N -0.586 5.586 10 C -0.307 4.307 11 H 0.120 0.880 12 C 0.043 3.957 13 N -0.879 5.879 14 Si 0.877 3.123 15 H -0.269 1.269 16 H -0.275 1.275 17 H -0.269 1.269 18 C -0.146 4.146 19 C 0.061 3.939 20 O -0.388 6.388 21 H 0.054 0.946 22 H 0.068 0.932 23 H 0.058 0.942 24 H 0.064 0.936 25 H 0.077 0.923 26 H 0.370 0.630 27 H 0.274 0.726 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.058 0.942 31 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.569 -11.422 -2.081 13.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.016 3.984 3 H 0.110 0.890 4 C -0.157 4.157 5 C -0.131 4.131 6 H 0.104 0.896 7 C 0.239 3.761 8 O -0.458 6.458 9 N -0.224 5.224 10 C -0.436 4.436 11 H 0.138 0.862 12 C -0.160 4.160 13 N -0.519 5.519 14 Si 0.703 3.297 15 H -0.195 1.195 16 H -0.201 1.201 17 H -0.195 1.195 18 C -0.184 4.184 19 C -0.016 4.016 20 O -0.307 6.307 21 H 0.073 0.927 22 H 0.087 0.913 23 H 0.077 0.923 24 H 0.083 0.917 25 H 0.095 0.905 26 H 0.203 0.797 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.076 0.924 31 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.999 -10.701 -2.168 12.969 hybrid contribution 1.476 -0.989 0.246 1.794 sum -5.523 -11.690 -1.922 13.071 Atomic orbital electron populations 1.21725 0.93967 1.01830 1.02113 1.22403 0.94145 0.97788 0.84086 0.89022 1.21873 0.93597 1.00508 0.99745 1.21317 0.97122 0.95887 0.98757 0.89595 1.19741 0.82687 0.89960 0.83702 1.90497 1.57114 1.43581 1.54609 1.42266 1.05683 1.08233 1.66189 1.19458 0.92262 0.83805 1.48042 0.86247 1.25045 0.96791 0.96664 0.97550 1.69620 1.13882 1.19357 1.49042 0.86713 0.81645 0.82310 0.79048 1.19485 1.20055 1.19477 1.22174 1.01113 0.99937 0.95147 1.22503 0.81377 1.00317 0.97372 1.87801 1.20693 1.78413 1.43836 0.92665 0.91281 0.92317 0.91719 0.90456 0.79657 0.91559 0.90944 0.90780 0.92416 0.89282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.57 37.16 0.36 -1.57 16 2 C 0.07 1.25 2.97 -26.68 -0.08 1.17 16 3 H 0.09 1.90 5.82 -51.93 -0.30 1.59 16 4 C -0.12 -1.91 4.56 -26.59 -0.12 -2.03 16 5 C -0.11 -1.87 3.04 -91.58 -0.28 -2.15 16 6 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 7 C 0.45 10.18 5.77 -10.99 -0.06 10.11 16 8 O -0.57 -14.92 13.43 5.55 0.07 -14.85 16 9 N -0.59 -13.88 4.97 -10.96 -0.05 -13.93 16 10 C -0.31 -8.61 10.16 -14.93 -0.15 -8.76 16 11 H 0.12 3.82 7.39 -52.49 -0.39 3.44 16 12 C 0.04 1.17 5.50 -17.47 -0.10 1.07 16 13 N -0.88 -25.54 13.96 55.50 0.77 -24.76 16 14 Si 0.88 19.25 27.74 -169.99 -4.71 14.53 16 15 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 16 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 17 H -0.27 -5.42 6.52 56.52 0.37 -5.05 16 18 C -0.15 -2.18 5.56 -26.59 -0.15 -2.33 16 19 C 0.06 1.00 6.62 37.21 0.25 1.24 16 20 O -0.39 -6.71 10.41 -35.23 -0.37 -7.08 16 21 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 22 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 23 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.08 1.27 8.02 -51.93 -0.42 0.86 16 26 H 0.37 7.80 5.15 -40.82 -0.21 7.59 16 27 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 28 H 0.07 1.03 7.49 -51.93 -0.39 0.64 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.06 1.09 7.38 -51.93 -0.38 0.71 16 31 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 251.53 15.07 3.79 3.79 Total: -1.00 -31.00 251.53 -5.05 -36.05 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -4.22 Total: 9.49 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: -0.34 Total: -3.24 kcal Atomic # 7 Polarization: -39.41 SS G_CDS: 0.72 Total: -38.69 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: -0.29 Total: -21.93 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -4.71 Total: 14.53 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -31.00 -5.05 -36.05 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259652594.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.907 kcal (2) G-P(sol) polarization free energy of solvation -30.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds