Wall clock time and date at job start Sun Mar 29 2020 21:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09001 * 109.47940 * 2 1 4 4 C 1.53090 * 109.48724 * 120.03270 * 2 1 3 5 5 C 1.53184 * 109.16007 * 177.60045 * 4 2 1 6 6 H 1.08992 * 109.61456 * 183.11112 * 5 4 2 7 7 C 1.50698 * 109.54316 * 62.88216 * 5 4 2 8 8 O 1.21293 * 120.00006 * 0.44826 * 7 5 4 9 9 N 1.34777 * 119.99538 * 180.44169 * 7 5 4 10 10 C 1.37104 * 119.99773 * 179.72591 * 9 7 5 11 11 H 1.08002 * 119.99671 * 0.27660 * 10 9 7 12 12 C 1.38950 * 120.00030 * 180.27703 * 10 9 7 13 13 N 1.31413 * 119.99930 * 179.97438 * 12 10 9 14 14 Si 1.86800 * 119.99918 * 0.02562 * 12 10 9 15 15 H 1.48498 * 109.47112 * 89.99702 * 14 12 10 16 16 H 1.48498 * 109.47011 * 209.99970 * 14 12 10 17 17 H 1.48494 * 109.47201 * 329.99943 * 14 12 10 18 18 C 1.53181 * 109.03250 * 303.01695 * 5 4 2 19 19 C 1.53094 * 109.16559 * 56.98460 * 18 5 4 20 20 O 1.42904 * 109.47702 * 239.98327 * 2 1 3 21 21 H 1.09004 * 109.46717 * 180.02562 * 1 2 3 22 22 H 1.08994 * 109.47513 * 300.02140 * 1 2 3 23 23 H 1.09003 * 109.46952 * 60.02503 * 1 2 3 24 24 H 1.08994 * 109.52295 * 57.69489 * 4 2 1 25 25 H 1.08997 * 109.52372 * 297.50148 * 4 2 1 26 26 H 0.97001 * 120.00485 * 0.02562 * 9 7 5 27 27 H 0.96999 * 119.99993 * 179.97438 * 13 12 10 28 28 H 1.09002 * 109.51859 * 176.88502 * 18 5 4 29 29 H 1.09003 * 109.52511 * 297.07444 * 18 5 4 30 30 H 1.08996 * 109.48231 * 62.36816 * 19 18 5 31 31 H 1.08997 * 109.48011 * 182.40666 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0408 -0.7223 1.2494 5 6 3.5714 -0.7706 1.2119 6 1 3.9409 -1.3315 2.0702 7 6 4.1211 0.6320 1.2516 8 8 3.3649 1.5783 1.3128 9 7 5.4532 0.8348 1.2190 10 6 5.9532 2.1110 1.2494 11 1 5.2798 2.9536 1.3039 12 6 7.3263 2.3204 1.2101 13 7 7.8055 3.5437 1.2387 14 14 8.4909 0.8629 1.1151 15 1 8.7514 0.5294 -0.3083 16 1 9.7706 1.2075 1.7850 17 1 7.8765 -0.3067 1.7931 18 6 4.0179 -1.4596 -0.0813 19 6 3.4308 -0.7088 -1.2794 20 8 2.0066 -0.6740 -1.1666 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5141 0.8897 23 1 -0.3633 0.5135 -0.8902 24 1 1.6447 -1.7375 1.2707 25 1 1.7151 -0.1845 2.1398 26 1 6.0580 0.0780 1.1698 27 1 8.7640 3.6898 1.2117 28 1 5.1061 -1.4491 -0.1426 29 1 3.6618 -2.4898 -0.0868 30 1 3.8191 0.3095 -1.2960 31 1 3.7101 -1.2197 -2.2008 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259652594.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:26 Heat of formation + Delta-G solvation = -118.129608 kcal Electronic energy + Delta-G solvation = -14943.211366 eV Core-core repulsion = 12416.224200 eV Total energy + Delta-G solvation = -2526.987166 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.41973 -39.10565 -36.11297 -34.65449 -33.87296 -33.33786 -28.80681 -27.44589 -25.07364 -23.53474 -22.32250 -21.02383 -19.67747 -17.54705 -17.20500 -17.07862 -16.75593 -15.99207 -15.69201 -15.13282 -14.77635 -14.72448 -14.28010 -13.57280 -13.34680 -13.24450 -12.96102 -12.83716 -12.74546 -12.45964 -12.03144 -11.96836 -11.67487 -11.55529 -11.29204 -10.56622 -10.27241 -10.04462 -8.44459 -6.05260 1.26999 1.32198 1.41310 1.90889 2.19888 2.84503 2.92303 3.11503 3.72329 3.86900 3.90376 4.03479 4.29110 4.37388 4.49027 4.60662 4.72328 4.77397 4.84341 4.94224 5.02931 5.06340 5.12210 5.27825 5.34092 5.52238 5.92878 6.32191 6.54599 6.84563 7.35943 7.92188 8.73213 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.047200 B = 0.009314 C = 0.008640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.083416 B = 3005.451576 C = 3240.141708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.067 3.933 3 H 0.042 0.958 4 C -0.117 4.117 5 C -0.105 4.105 6 H 0.119 0.881 7 C 0.452 3.548 8 O -0.617 6.617 9 N -0.587 5.587 10 C -0.329 4.329 11 H 0.055 0.945 12 C -0.014 4.014 13 N -0.933 5.933 14 Si 0.960 3.040 15 H -0.254 1.254 16 H -0.273 1.273 17 H -0.232 1.232 18 C -0.140 4.140 19 C 0.054 3.946 20 O -0.391 6.391 21 H 0.078 0.922 22 H 0.075 0.925 23 H 0.057 0.943 24 H 0.103 0.897 25 H 0.066 0.934 26 H 0.388 0.612 27 H 0.279 0.721 28 H 0.084 0.916 29 H 0.113 0.887 30 H 0.015 0.985 31 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.202 -15.722 -2.159 17.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.010 3.990 3 H 0.060 0.940 4 C -0.155 4.155 5 C -0.127 4.127 6 H 0.137 0.863 7 C 0.241 3.759 8 O -0.503 6.503 9 N -0.228 5.228 10 C -0.458 4.458 11 H 0.073 0.927 12 C -0.213 4.213 13 N -0.574 5.574 14 Si 0.779 3.221 15 H -0.179 1.179 16 H -0.198 1.198 17 H -0.155 1.155 18 C -0.178 4.178 19 C -0.023 4.023 20 O -0.311 6.311 21 H 0.097 0.903 22 H 0.094 0.906 23 H 0.076 0.924 24 H 0.121 0.879 25 H 0.085 0.915 26 H 0.224 0.776 27 H 0.089 0.911 28 H 0.103 0.897 29 H 0.132 0.868 30 H 0.033 0.967 31 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -6.657 -15.019 -2.246 16.581 hybrid contribution 1.236 0.477 0.245 1.348 sum -5.421 -14.542 -2.000 15.648 Atomic orbital electron populations 1.21704 0.91489 1.03400 1.02489 1.22369 0.96207 0.95440 0.84997 0.94020 1.21906 0.92914 1.02232 0.98437 1.21428 0.97672 0.91936 1.01625 0.86273 1.20983 0.81935 0.92214 0.80815 1.90494 1.58180 1.46096 1.55545 1.42077 1.06532 1.06964 1.67181 1.19015 0.92219 0.84346 1.50261 0.92726 1.26108 0.98406 1.00694 0.96046 1.69803 1.14766 1.22670 1.50130 0.85441 0.78099 0.78378 0.80166 1.17850 1.19840 1.15496 1.22220 1.01897 1.01179 0.92464 1.22659 0.80983 0.98676 0.99953 1.87801 1.21274 1.77971 1.44027 0.90347 0.90597 0.92422 0.87879 0.91488 0.77621 0.91104 0.89727 0.86824 0.96676 0.86196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.49 9.57 71.99 0.69 -2.80 16 2 C 0.07 2.26 2.97 30.63 0.09 2.35 16 3 H 0.04 1.82 5.82 -2.39 -0.01 1.81 16 4 C -0.12 -3.46 4.56 30.69 0.14 -3.32 16 5 C -0.11 -3.29 3.04 -11.42 -0.03 -3.33 16 6 H 0.12 3.03 8.14 -2.39 -0.02 3.01 16 7 C 0.45 20.48 5.77 87.66 0.51 20.98 16 8 O -0.62 -33.89 13.43 -3.07 -0.04 -33.93 16 9 N -0.59 -27.83 4.97 -306.98 -1.53 -29.36 16 10 C -0.33 -19.35 10.16 84.04 0.85 -18.50 16 11 H 0.05 3.83 7.39 -2.91 -0.02 3.81 16 12 C -0.01 -0.76 5.50 84.93 0.47 -0.30 16 13 N -0.93 -56.39 13.96 21.66 0.30 -56.09 16 14 Si 0.96 38.60 27.74 68.60 1.90 40.50 16 15 H -0.25 -9.62 7.11 99.48 0.71 -8.92 16 16 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 17 H -0.23 -7.85 6.52 99.48 0.65 -7.20 16 18 C -0.14 -3.59 5.56 30.69 0.17 -3.42 16 19 C 0.05 1.65 6.62 72.01 0.48 2.13 16 20 O -0.39 -12.85 10.41 -148.98 -1.55 -14.40 16 21 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 22 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 23 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 25 H 0.07 2.11 8.02 -2.39 -0.02 2.09 16 26 H 0.39 15.35 5.15 -92.71 -0.48 14.87 16 27 H 0.28 15.41 8.31 -92.71 -0.77 14.64 16 28 H 0.08 2.00 7.49 -2.39 -0.02 1.98 16 29 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.01 0.58 7.38 -2.39 -0.02 0.56 16 31 H 0.12 2.88 8.14 -2.39 -0.02 2.86 16 Total: -1.00 -73.80 251.53 3.04 -70.77 By element: Atomic # 1 Polarization: 28.13 SS G_CDS: 0.59 Total: 28.71 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: 3.36 Total: -6.21 kcal Atomic # 7 Polarization: -84.22 SS G_CDS: -1.22 Total: -85.44 kcal Atomic # 8 Polarization: -46.74 SS G_CDS: -1.59 Total: -48.33 kcal Atomic # 14 Polarization: 38.60 SS G_CDS: 1.90 Total: 40.50 kcal Total: -73.80 3.04 -70.77 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259652594.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.364 kcal (2) G-P(sol) polarization free energy of solvation -73.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds