Wall clock time and date at job start Sun Mar 29 2020 21:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.48357 * 2 1 4 4 C 1.53098 * 109.48055 * 239.97848 * 2 1 3 5 5 C 1.53170 * 109.16072 * 182.40563 * 4 2 1 6 6 H 1.09004 * 109.54128 * 176.93812 * 5 4 2 7 7 C 1.50706 * 109.54562 * 297.11124 * 5 4 2 8 8 O 1.21292 * 119.99873 * 0.02562 * 7 5 4 9 9 N 1.34777 * 120.00146 * 180.02562 * 7 5 4 10 10 C 1.37095 * 119.99970 * 180.02562 * 9 7 5 11 11 H 1.07999 * 119.99992 * 359.97438 * 10 9 7 12 12 C 1.38956 * 120.00025 * 179.97438 * 10 9 7 13 13 N 1.31411 * 119.99490 * 0.27571 * 12 10 9 14 14 Si 1.86800 * 119.99850 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47364 * 0.02562 * 14 12 10 16 16 H 1.48508 * 109.46883 * 120.00239 * 14 12 10 17 17 H 1.48497 * 109.46870 * 240.00049 * 14 12 10 18 18 C 1.53183 * 109.04019 * 56.97962 * 5 4 2 19 19 C 1.53090 * 109.16042 * 303.01949 * 18 5 4 20 20 O 1.42897 * 109.48100 * 120.03294 * 2 1 3 21 21 H 1.09004 * 109.46835 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47471 * 300.01996 * 1 2 3 23 23 H 1.08997 * 109.47354 * 60.02515 * 1 2 3 24 24 H 1.09005 * 109.52153 * 62.49845 * 4 2 1 25 25 H 1.09000 * 109.51841 * 302.31073 * 4 2 1 26 26 H 0.96999 * 120.00043 * 359.97438 * 9 7 5 27 27 H 0.96991 * 120.00673 * 359.71788 * 13 12 10 28 28 H 1.09003 * 109.51918 * 62.92182 * 18 5 4 29 29 H 1.08994 * 109.52485 * 183.11465 * 18 5 4 30 30 H 1.08998 * 109.48029 * 297.62492 * 19 18 5 31 31 H 1.08996 * 109.48817 * 177.59500 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0406 -0.7221 -1.2497 5 6 3.5710 -0.7707 -1.2123 6 1 3.9392 -1.3310 -2.0717 7 6 4.1211 0.6319 -1.2518 8 8 3.3647 1.5787 -1.3042 9 7 5.4534 0.8342 -1.2289 10 6 5.9537 2.1101 -1.2643 11 1 5.2802 2.9531 -1.3110 12 6 7.3273 2.3187 -1.2401 13 7 8.1468 1.2927 -1.1888 14 14 8.0089 4.0572 -1.2891 15 1 6.8865 5.0275 -1.3508 16 1 8.8130 4.3082 -0.0660 17 1 8.8693 4.2179 -2.4887 18 6 4.0177 -1.4600 0.0807 19 6 3.4308 -0.7093 1.2789 20 8 2.0065 -0.6743 1.1663 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5141 0.8898 23 1 -0.3634 0.5134 -0.8902 24 1 1.7148 -0.1841 -2.1400 25 1 1.6443 -1.7373 -1.2711 26 1 6.0582 0.0771 -1.1866 27 1 7.7928 0.3900 -1.1636 28 1 3.6614 -2.4901 0.0861 29 1 5.1059 -1.4496 0.1419 30 1 3.8192 0.3089 1.2957 31 1 3.7100 -1.2202 2.2004 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259652597.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:29 Heat of formation + Delta-G solvation = -101.329691 kcal Electronic energy + Delta-G solvation = -14926.523541 eV Core-core repulsion = 12400.264874 eV Total energy + Delta-G solvation = -2526.258667 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.85500 -37.45140 -34.43448 -33.15442 -32.42372 -30.88174 -27.55063 -25.25929 -23.63836 -22.24885 -20.99441 -18.84430 -17.92933 -16.04559 -15.87518 -15.72024 -14.79186 -14.54316 -13.93412 -13.72541 -13.34014 -13.28904 -12.27636 -12.09597 -11.91982 -11.61564 -11.45878 -11.23562 -10.99644 -10.74821 -10.33997 -10.25317 -10.05330 -9.88259 -9.55285 -9.08068 -8.28490 -8.05489 -6.79108 -3.92419 3.28320 3.32282 3.51328 3.79539 4.14017 4.22540 4.73110 5.01860 5.13761 5.26660 5.28305 5.32624 5.60076 5.70435 5.82128 5.85971 5.92153 5.98840 6.06667 6.18405 6.26698 6.30906 6.39086 6.46705 6.66204 7.64429 7.77151 8.04968 8.55834 8.75658 9.44147 9.83651 10.64178 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.048872 B = 0.008483 C = 0.008035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.786300 B = 3299.911625 C = 3483.901785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.073 3.927 3 H 0.091 0.909 4 C -0.119 4.119 5 C -0.107 4.107 6 H 0.083 0.917 7 C 0.446 3.554 8 O -0.586 6.586 9 N -0.571 5.571 10 C -0.384 4.384 11 H 0.100 0.900 12 C -0.009 4.009 13 N -0.900 5.900 14 Si 1.095 2.905 15 H -0.284 1.284 16 H -0.284 1.284 17 H -0.284 1.284 18 C -0.144 4.144 19 C 0.063 3.937 20 O -0.388 6.388 21 H 0.054 0.946 22 H 0.057 0.943 23 H 0.068 0.932 24 H 0.075 0.925 25 H 0.063 0.937 26 H 0.375 0.625 27 H 0.262 0.738 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.055 0.945 31 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.767 -5.457 1.856 9.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.016 3.984 3 H 0.109 0.891 4 C -0.157 4.157 5 C -0.129 4.129 6 H 0.102 0.898 7 C 0.233 3.767 8 O -0.472 6.472 9 N -0.207 5.207 10 C -0.513 4.513 11 H 0.118 0.882 12 C -0.211 4.211 13 N -0.539 5.539 14 Si 0.921 3.079 15 H -0.209 1.209 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.182 4.182 19 C -0.014 4.014 20 O -0.308 6.308 21 H 0.074 0.926 22 H 0.077 0.923 23 H 0.087 0.913 24 H 0.094 0.906 25 H 0.082 0.918 26 H 0.209 0.791 27 H 0.073 0.927 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.073 0.927 31 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.971 -3.983 1.944 8.261 hybrid contribution -0.731 -1.404 -0.281 1.607 sum -7.702 -5.386 1.663 9.545 Atomic orbital electron populations 1.21724 0.94010 1.01844 1.02043 1.22394 0.94077 0.97771 0.84131 0.89090 1.21865 0.93763 1.00401 0.99638 1.21282 0.96938 0.95989 0.98665 0.89842 1.19752 0.82871 0.89882 0.84208 1.90459 1.57288 1.43607 1.55807 1.41996 1.05330 1.08591 1.64806 1.20633 0.94068 0.84685 1.51922 0.88219 1.26518 0.92008 1.07200 0.95419 1.70841 1.36957 0.99117 1.47019 0.83062 0.75488 0.72057 0.77255 1.20910 1.20967 1.20972 1.22149 1.01245 0.99755 0.95038 1.22478 0.81268 1.00190 0.97439 1.87793 1.20763 1.78406 1.43831 0.92642 0.92346 0.91331 0.90625 0.91799 0.79123 0.92698 0.90927 0.90800 0.92655 0.89320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.56 37.16 0.36 -1.62 16 2 C 0.07 1.30 2.97 -26.68 -0.08 1.22 16 3 H 0.09 1.93 5.80 -51.93 -0.30 1.63 16 4 C -0.12 -2.00 4.56 -26.59 -0.12 -2.12 16 5 C -0.11 -1.94 3.04 -91.59 -0.28 -2.22 16 6 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 7 C 0.45 10.45 5.77 -10.98 -0.06 10.39 16 8 O -0.59 -15.57 13.41 5.55 0.07 -15.49 16 9 N -0.57 -14.26 5.17 -10.96 -0.06 -14.32 16 10 C -0.38 -10.71 9.68 -14.93 -0.14 -10.86 16 11 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 12 C -0.01 -0.24 5.50 -17.47 -0.10 -0.34 16 13 N -0.90 -25.10 13.68 55.50 0.76 -24.34 16 14 Si 1.10 24.29 29.92 -169.99 -5.09 19.21 16 15 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 16 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 17 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 18 C -0.14 -2.31 5.57 -26.59 -0.15 -2.46 16 19 C 0.06 1.08 6.62 37.20 0.25 1.33 16 20 O -0.39 -6.98 10.41 -35.23 -0.37 -7.34 16 21 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 22 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.08 1.30 8.03 -51.93 -0.42 0.89 16 25 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.38 8.75 6.15 -40.82 -0.25 8.50 16 27 H 0.26 7.02 6.77 -40.82 -0.28 6.74 16 28 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.07 1.17 7.52 -51.93 -0.39 0.78 16 30 H 0.06 1.11 7.38 -51.93 -0.38 0.72 16 31 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 LS Contribution 252.99 15.07 3.81 3.81 Total: -1.00 -31.07 252.99 -5.34 -36.42 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -4.15 Total: 8.72 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: -0.33 Total: -6.67 kcal Atomic # 7 Polarization: -39.36 SS G_CDS: 0.70 Total: -38.66 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: -0.29 Total: -22.83 kcal Atomic # 14 Polarization: 24.29 SS G_CDS: -5.09 Total: 19.21 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -31.07 -5.34 -36.42 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259652597.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.912 kcal (2) G-P(sol) polarization free energy of solvation -31.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds