Wall clock time and date at job start Sun Mar 29 2020 21:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.48357 * 2 1 4 4 C 1.53098 * 109.48055 * 239.97848 * 2 1 3 5 5 C 1.53170 * 109.16072 * 182.40563 * 4 2 1 6 6 H 1.09004 * 109.54128 * 176.93812 * 5 4 2 7 7 C 1.50706 * 109.54562 * 297.11124 * 5 4 2 8 8 O 1.21292 * 119.99873 * 0.02562 * 7 5 4 9 9 N 1.34777 * 120.00146 * 180.02562 * 7 5 4 10 10 C 1.37095 * 119.99970 * 180.02562 * 9 7 5 11 11 H 1.07999 * 119.99992 * 359.97438 * 10 9 7 12 12 C 1.38956 * 120.00025 * 179.97438 * 10 9 7 13 13 N 1.31411 * 119.99490 * 0.27571 * 12 10 9 14 14 Si 1.86800 * 119.99850 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47364 * 0.02562 * 14 12 10 16 16 H 1.48508 * 109.46883 * 120.00239 * 14 12 10 17 17 H 1.48497 * 109.46870 * 240.00049 * 14 12 10 18 18 C 1.53183 * 109.04019 * 56.97962 * 5 4 2 19 19 C 1.53090 * 109.16042 * 303.01949 * 18 5 4 20 20 O 1.42897 * 109.48100 * 120.03294 * 2 1 3 21 21 H 1.09004 * 109.46835 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47471 * 300.01996 * 1 2 3 23 23 H 1.08997 * 109.47354 * 60.02515 * 1 2 3 24 24 H 1.09005 * 109.52153 * 62.49845 * 4 2 1 25 25 H 1.09000 * 109.51841 * 302.31073 * 4 2 1 26 26 H 0.96999 * 120.00043 * 359.97438 * 9 7 5 27 27 H 0.96991 * 120.00673 * 359.71788 * 13 12 10 28 28 H 1.09003 * 109.51918 * 62.92182 * 18 5 4 29 29 H 1.08994 * 109.52485 * 183.11465 * 18 5 4 30 30 H 1.08998 * 109.48029 * 297.62492 * 19 18 5 31 31 H 1.08996 * 109.48817 * 177.59500 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0406 -0.7221 -1.2497 5 6 3.5710 -0.7707 -1.2123 6 1 3.9392 -1.3310 -2.0717 7 6 4.1211 0.6319 -1.2518 8 8 3.3647 1.5787 -1.3042 9 7 5.4534 0.8342 -1.2289 10 6 5.9537 2.1101 -1.2643 11 1 5.2802 2.9531 -1.3110 12 6 7.3273 2.3187 -1.2401 13 7 8.1468 1.2927 -1.1888 14 14 8.0089 4.0572 -1.2891 15 1 6.8865 5.0275 -1.3508 16 1 8.8130 4.3082 -0.0660 17 1 8.8693 4.2179 -2.4887 18 6 4.0177 -1.4600 0.0807 19 6 3.4308 -0.7093 1.2789 20 8 2.0065 -0.6743 1.1663 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5141 0.8898 23 1 -0.3634 0.5134 -0.8902 24 1 1.7148 -0.1841 -2.1400 25 1 1.6443 -1.7373 -1.2711 26 1 6.0582 0.0771 -1.1866 27 1 7.7928 0.3900 -1.1636 28 1 3.6614 -2.4901 0.0861 29 1 5.1059 -1.4496 0.1419 30 1 3.8192 0.3089 1.2957 31 1 3.7100 -1.2202 2.2004 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259652597.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:29 Heat of formation + Delta-G solvation = -123.151889 kcal Electronic energy + Delta-G solvation = -14927.469823 eV Core-core repulsion = 12400.264874 eV Total energy + Delta-G solvation = -2527.204949 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.45546 -39.16446 -36.44838 -34.68458 -33.79141 -32.83218 -28.85072 -27.14389 -25.23387 -23.70845 -22.53824 -20.58930 -19.97061 -17.79408 -17.27590 -17.13605 -16.74304 -16.03926 -15.62889 -15.39452 -15.01476 -14.76312 -13.62449 -13.47523 -13.35838 -13.26506 -12.87944 -12.82872 -12.80127 -12.06984 -11.99340 -11.90715 -11.73682 -11.58679 -11.32229 -10.59352 -10.14851 -10.04248 -8.95637 -6.09479 1.49547 1.51493 1.78927 1.97386 2.38936 2.80841 2.99234 3.13290 3.67307 3.81087 3.84052 3.97090 4.24427 4.29650 4.44065 4.53926 4.65258 4.71705 4.78484 4.86773 4.96889 4.99531 5.05123 5.22390 5.29660 5.61882 5.93194 6.25743 6.53470 6.71453 7.41248 7.89267 8.51913 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.048872 B = 0.008483 C = 0.008035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.786300 B = 3299.911625 C = 3483.901785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.068 3.932 3 H 0.045 0.955 4 C -0.115 4.115 5 C -0.104 4.104 6 H 0.108 0.892 7 C 0.446 3.554 8 O -0.622 6.622 9 N -0.582 5.582 10 C -0.410 4.410 11 H 0.071 0.929 12 C -0.041 4.041 13 N -0.915 5.915 14 Si 1.136 2.864 15 H -0.281 1.281 16 H -0.271 1.271 17 H -0.271 1.271 18 C -0.137 4.137 19 C 0.059 3.941 20 O -0.390 6.390 21 H 0.077 0.923 22 H 0.059 0.941 23 H 0.077 0.923 24 H 0.067 0.933 25 H 0.100 0.900 26 H 0.383 0.617 27 H 0.260 0.740 28 H 0.110 0.890 29 H 0.075 0.925 30 H 0.013 0.987 31 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.181 -7.031 1.891 10.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.011 3.989 3 H 0.062 0.938 4 C -0.153 4.153 5 C -0.126 4.126 6 H 0.126 0.874 7 C 0.235 3.765 8 O -0.509 6.509 9 N -0.220 5.220 10 C -0.540 4.540 11 H 0.089 0.911 12 C -0.239 4.239 13 N -0.555 5.555 14 Si 0.956 3.044 15 H -0.206 1.206 16 H -0.196 1.196 17 H -0.196 1.196 18 C -0.175 4.175 19 C -0.017 4.017 20 O -0.309 6.309 21 H 0.095 0.905 22 H 0.078 0.922 23 H 0.096 0.904 24 H 0.086 0.914 25 H 0.118 0.882 26 H 0.218 0.782 27 H 0.071 0.929 28 H 0.128 0.872 29 H 0.093 0.907 30 H 0.032 0.968 31 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.391 -5.590 1.980 9.476 hybrid contribution -0.685 -0.933 -0.271 1.189 sum -8.076 -6.523 1.709 10.521 Atomic orbital electron populations 1.21703 0.91225 1.03424 1.02647 1.22385 0.96328 0.95472 0.84746 0.93751 1.21895 0.92636 1.02148 0.98653 1.21370 0.97852 0.92373 1.00989 0.87395 1.20848 0.82053 0.92033 0.81598 1.90447 1.58064 1.45770 1.56576 1.42022 1.06193 1.07926 1.65835 1.20571 0.94294 0.85391 1.53694 0.91069 1.27794 0.91940 1.10022 0.94179 1.70910 1.37145 0.99400 1.48007 0.82576 0.75315 0.68295 0.78186 1.20637 1.19620 1.19573 1.22153 1.01355 1.01074 0.92877 1.22575 0.81064 0.98447 0.99646 1.87799 1.21008 1.78025 1.44091 0.90453 0.92188 0.90434 0.91436 0.88162 0.78226 0.92942 0.87192 0.90685 0.96828 0.86367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.51 9.56 71.98 0.69 -2.82 16 2 C 0.07 2.35 2.97 30.63 0.09 2.44 16 3 H 0.04 1.96 5.80 -2.39 -0.01 1.94 16 4 C -0.12 -3.63 4.56 30.68 0.14 -3.49 16 5 C -0.10 -3.60 3.04 -11.42 -0.03 -3.63 16 6 H 0.11 3.24 8.14 -2.39 -0.02 3.22 16 7 C 0.45 21.19 5.77 87.66 0.51 21.69 16 8 O -0.62 -34.21 13.41 -3.07 -0.04 -34.25 16 9 N -0.58 -29.65 5.17 -306.98 -1.59 -31.23 16 10 C -0.41 -23.56 9.68 84.04 0.81 -22.75 16 11 H 0.07 4.43 7.16 -2.91 -0.02 4.40 16 12 C -0.04 -2.23 5.50 84.93 0.47 -1.76 16 13 N -0.92 -50.99 13.68 21.66 0.30 -50.69 16 14 Si 1.14 48.91 29.92 68.60 2.05 50.96 16 15 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 16 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 17 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 18 C -0.14 -4.03 5.57 30.69 0.17 -3.86 16 19 C 0.06 1.97 6.62 72.01 0.48 2.44 16 20 O -0.39 -13.36 10.41 -148.98 -1.55 -14.91 16 21 H 0.08 1.71 8.14 -2.38 -0.02 1.70 16 22 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 23 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 24 H 0.07 2.23 8.03 -2.38 -0.02 2.21 16 25 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 26 H 0.38 18.02 6.15 -92.71 -0.57 17.45 16 27 H 0.26 13.99 6.77 -92.72 -0.63 13.36 16 28 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 29 H 0.07 2.21 7.52 -2.39 -0.02 2.20 16 30 H 0.01 0.55 7.38 -2.39 -0.02 0.53 16 31 H 0.12 3.16 8.14 -2.39 -0.02 3.15 16 Total: -1.00 -68.38 252.99 3.19 -65.19 By element: Atomic # 1 Polarization: 25.98 SS G_CDS: 0.70 Total: 26.68 kcal Atomic # 6 Polarization: -15.06 SS G_CDS: 3.32 Total: -11.74 kcal Atomic # 7 Polarization: -80.63 SS G_CDS: -1.29 Total: -81.92 kcal Atomic # 8 Polarization: -47.57 SS G_CDS: -1.59 Total: -49.16 kcal Atomic # 14 Polarization: 48.91 SS G_CDS: 2.05 Total: 50.96 kcal Total: -68.38 3.19 -65.19 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259652597.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.961 kcal (2) G-P(sol) polarization free energy of solvation -68.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds