Wall clock time and date at job start Sun Mar 29 2020 22:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21277 * 120.00298 * 2 1 4 4 N 1.34781 * 119.99610 * 180.02562 * 2 1 3 5 5 C 1.47015 * 125.65057 * 359.95255 * 4 2 1 6 6 C 1.54328 * 107.27061 * 181.09935 * 5 4 2 7 7 C 1.55150 * 102.94110 * 22.19436 * 6 5 4 8 8 H 1.08995 * 111.04235 * 82.59047 * 7 6 5 9 9 O 1.42902 * 111.00248 * 206.42327 * 7 6 5 10 10 C 1.42898 * 114.00186 * 203.64701 * 9 7 6 11 11 C 1.50703 * 109.47171 * 180.02562 * 10 9 7 12 12 H 1.07996 * 119.99751 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00001 * 180.02562 * 11 10 9 14 14 N 1.31517 * 120.00094 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99955 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47116 * 59.99536 * 15 13 11 17 17 H 1.48500 * 109.46585 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.46730 * 299.99515 * 15 13 11 19 19 C 1.47423 * 125.64432 * 179.97438 * 4 2 1 20 20 H 1.08999 * 109.46483 * 269.99523 * 1 2 3 21 21 H 1.08999 * 109.46921 * 29.99531 * 1 2 3 22 22 H 1.08994 * 109.47192 * 149.99517 * 1 2 3 23 23 H 1.09003 * 109.88221 * 300.51774 * 5 4 2 24 24 H 1.09001 * 109.88492 * 61.67938 * 5 4 2 25 25 H 1.08997 * 110.71897 * 263.82810 * 6 5 4 26 26 H 1.09005 * 110.71781 * 140.55650 * 6 5 4 27 27 H 1.09002 * 109.47259 * 300.00293 * 10 9 7 28 28 H 1.09001 * 109.47074 * 60.00315 * 10 9 7 29 29 H 0.97000 * 120.00333 * 179.97438 * 14 13 11 30 30 H 1.09002 * 110.37105 * 36.98999 * 19 4 2 31 31 H 1.09004 * 110.36629 * 274.66918 * 19 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1673 -0.0005 5 6 1.5746 -2.5066 -0.0001 6 6 2.7281 -3.5316 0.0273 7 6 3.9081 -2.7113 0.6119 8 1 3.8593 -2.6765 1.7002 9 8 5.1631 -3.2365 0.1748 10 6 6.2577 -2.9202 1.0373 11 6 7.5240 -3.5201 0.4826 12 1 7.4958 -4.0859 -0.4368 13 6 8.7185 -3.3466 1.1490 14 7 8.7530 -2.6572 2.2684 15 14 10.2883 -4.0897 0.4610 16 1 10.5478 -3.5338 -0.8913 17 1 11.4256 -3.7610 1.3575 18 1 10.1392 -5.5643 0.3699 19 6 3.6480 -1.3124 -0.0011 20 1 -0.3632 -0.0001 1.0277 21 1 -0.3633 0.8900 -0.5138 22 1 -0.3633 -0.8899 -0.5139 23 1 0.9482 -2.6297 0.8834 24 1 0.9781 -2.6438 -0.9020 25 1 2.9604 -3.8776 -0.9798 26 1 2.4824 -4.3712 0.6776 27 1 6.3674 -1.8377 1.1032 28 1 6.0671 -3.3272 2.0304 29 1 9.5932 -2.5354 2.7374 30 1 4.1061 -0.5376 0.6137 31 1 4.0333 -1.2667 -1.0198 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260240650.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:59 Heat of formation + Delta-G solvation = -86.942238 kcal Electronic energy + Delta-G solvation = -14097.199198 eV Core-core repulsion = 11571.564417 eV Total energy + Delta-G solvation = -2525.634781 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.88912 -37.74784 -35.73478 -32.77339 -31.29922 -29.79307 -28.11508 -26.82803 -23.38911 -22.30744 -20.77339 -19.24415 -17.05005 -16.68278 -16.37596 -15.36364 -15.18613 -14.47667 -14.21493 -13.79524 -13.50268 -12.90704 -12.69237 -12.59419 -12.39458 -12.02731 -11.72381 -11.62209 -11.10762 -10.86644 -10.76699 -10.37818 -10.02969 -9.84299 -9.18959 -8.96397 -8.57023 -8.24035 -6.14193 -4.16928 2.66774 3.02880 3.30792 3.33842 3.37380 4.29320 4.50015 4.64404 4.76960 5.00077 5.09325 5.19104 5.23003 5.27833 5.38744 5.53483 5.69578 5.76126 5.97227 6.06236 6.20721 6.26642 6.36980 7.03519 7.35402 7.57983 7.74466 8.08585 8.19968 8.46562 8.94534 9.48018 10.97134 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.058733 B = 0.005910 C = 0.005589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.621306 B = 4736.921028 C = 5008.828782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.522 3.478 3 O -0.549 6.549 4 N -0.617 5.617 5 C 0.104 3.896 6 C -0.129 4.129 7 C 0.079 3.921 8 H 0.069 0.931 9 O -0.377 6.377 10 C 0.193 3.807 11 C -0.519 4.519 12 H 0.067 0.933 13 C 0.058 3.942 14 N -0.897 5.897 15 Si 0.909 3.091 16 H -0.274 1.274 17 H -0.286 1.286 18 H -0.274 1.274 19 C 0.082 3.918 20 H 0.092 0.908 21 H 0.091 0.909 22 H 0.078 0.922 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.008 0.992 28 H 0.008 0.992 29 H 0.265 0.735 30 H 0.079 0.921 31 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.920 -0.489 -3.044 16.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.311 3.689 3 O -0.427 6.427 4 N -0.353 5.353 5 C -0.019 4.019 6 C -0.167 4.167 7 C 0.019 3.981 8 H 0.087 0.913 9 O -0.296 6.296 10 C 0.119 3.881 11 C -0.557 4.557 12 H 0.085 0.915 13 C -0.144 4.144 14 N -0.536 5.536 15 Si 0.736 3.264 16 H -0.200 1.200 17 H -0.211 1.211 18 H -0.200 1.200 19 C -0.041 4.041 20 H 0.110 0.890 21 H 0.110 0.890 22 H 0.097 0.903 23 H 0.087 0.913 24 H 0.088 0.912 25 H 0.105 0.895 26 H 0.104 0.896 27 H 0.026 0.974 28 H 0.026 0.974 29 H 0.075 0.925 30 H 0.097 0.903 31 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -15.478 0.096 -3.068 15.779 hybrid contribution 0.836 -0.212 0.035 0.863 sum -14.642 -0.116 -3.033 14.953 Atomic orbital electron populations 1.21869 0.91631 1.04632 1.04588 1.20482 0.90273 0.82146 0.75995 1.90731 1.70808 1.30706 1.50450 1.48501 1.08002 1.05770 1.73043 1.22061 0.96498 0.81841 1.01535 1.22704 0.93272 0.97294 1.03449 1.22949 0.86731 0.90879 0.97551 0.91298 1.87918 1.14834 1.74966 1.51849 1.20324 0.83137 0.95530 0.89110 1.20990 0.91046 1.34069 1.09596 0.91506 1.24948 0.99264 0.95298 0.94870 1.69950 1.27218 1.40097 1.16332 0.86374 0.81568 0.79570 0.78850 1.19971 1.21117 1.19979 1.22853 0.79411 0.99376 1.02474 0.88956 0.89035 0.90265 0.91254 0.91169 0.89491 0.89621 0.97393 0.97432 0.92496 0.90294 0.90508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.51 9.90 36.01 0.36 -1.16 16 2 C 0.52 7.70 7.96 -10.98 -0.09 7.61 16 3 O -0.55 -10.69 17.35 5.56 0.10 -10.59 16 4 N -0.62 -8.95 3.33 -170.50 -0.57 -9.52 16 5 C 0.10 1.11 6.11 -3.07 -0.02 1.09 16 6 C -0.13 -1.68 6.69 -24.90 -0.17 -1.85 16 7 C 0.08 1.41 3.49 -24.57 -0.09 1.33 16 8 H 0.07 1.23 7.90 -51.93 -0.41 0.82 16 9 O -0.38 -8.73 10.14 -35.23 -0.36 -9.09 16 10 C 0.19 5.19 5.57 36.01 0.20 5.39 16 11 C -0.52 -15.08 9.43 -34.44 -0.32 -15.41 16 12 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 13 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 14 N -0.90 -26.75 13.29 55.43 0.74 -26.01 16 15 Si 0.91 21.69 29.54 -169.99 -5.02 16.67 16 16 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 19 C 0.08 1.44 6.64 -2.52 -0.02 1.42 16 20 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 21 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 22 H 0.08 0.53 7.12 -51.93 -0.37 0.16 16 23 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.07 0.59 7.86 -51.93 -0.41 0.19 16 25 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 26 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.01 0.22 8.11 -51.93 -0.42 -0.20 16 29 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.08 1.54 8.04 -51.93 -0.42 1.12 16 31 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 268.37 15.07 4.04 4.04 Total: -1.00 -33.44 268.37 -5.84 -39.28 By element: Atomic # 1 Polarization: -0.24 SS G_CDS: -4.53 Total: -4.77 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: -0.24 Total: -0.01 kcal Atomic # 7 Polarization: -35.70 SS G_CDS: 0.17 Total: -35.53 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -0.26 Total: -19.68 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -33.44 -5.84 -39.28 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260240650.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.666 kcal (2) G-P(sol) polarization free energy of solvation -33.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds