Wall clock time and date at job start Sun Mar 29 2020 22:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21277 * 120.00298 * 2 1 4 4 N 1.34781 * 119.99610 * 180.02562 * 2 1 3 5 5 C 1.47015 * 125.65057 * 359.95255 * 4 2 1 6 6 C 1.54328 * 107.27061 * 181.09935 * 5 4 2 7 7 C 1.55150 * 102.94110 * 22.19436 * 6 5 4 8 8 H 1.08995 * 111.04235 * 82.59047 * 7 6 5 9 9 O 1.42902 * 111.00248 * 206.42327 * 7 6 5 10 10 C 1.42898 * 114.00186 * 203.64701 * 9 7 6 11 11 C 1.50703 * 109.47171 * 180.02562 * 10 9 7 12 12 H 1.07996 * 119.99751 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00001 * 180.02562 * 11 10 9 14 14 N 1.31517 * 120.00094 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99955 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47116 * 59.99536 * 15 13 11 17 17 H 1.48500 * 109.46585 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.46730 * 299.99515 * 15 13 11 19 19 C 1.47423 * 125.64432 * 179.97438 * 4 2 1 20 20 H 1.08999 * 109.46483 * 269.99523 * 1 2 3 21 21 H 1.08999 * 109.46921 * 29.99531 * 1 2 3 22 22 H 1.08994 * 109.47192 * 149.99517 * 1 2 3 23 23 H 1.09003 * 109.88221 * 300.51774 * 5 4 2 24 24 H 1.09001 * 109.88492 * 61.67938 * 5 4 2 25 25 H 1.08997 * 110.71897 * 263.82810 * 6 5 4 26 26 H 1.09005 * 110.71781 * 140.55650 * 6 5 4 27 27 H 1.09002 * 109.47259 * 300.00293 * 10 9 7 28 28 H 1.09001 * 109.47074 * 60.00315 * 10 9 7 29 29 H 0.97000 * 120.00333 * 179.97438 * 14 13 11 30 30 H 1.09002 * 110.37105 * 36.98999 * 19 4 2 31 31 H 1.09004 * 110.36629 * 274.66918 * 19 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1673 -0.0005 5 6 1.5746 -2.5066 -0.0001 6 6 2.7281 -3.5316 0.0273 7 6 3.9081 -2.7113 0.6119 8 1 3.8593 -2.6765 1.7002 9 8 5.1631 -3.2365 0.1748 10 6 6.2577 -2.9202 1.0373 11 6 7.5240 -3.5201 0.4826 12 1 7.4958 -4.0859 -0.4368 13 6 8.7185 -3.3466 1.1490 14 7 8.7530 -2.6572 2.2684 15 14 10.2883 -4.0897 0.4610 16 1 10.5478 -3.5338 -0.8913 17 1 11.4256 -3.7610 1.3575 18 1 10.1392 -5.5643 0.3699 19 6 3.6480 -1.3124 -0.0011 20 1 -0.3632 -0.0001 1.0277 21 1 -0.3633 0.8900 -0.5138 22 1 -0.3633 -0.8899 -0.5139 23 1 0.9482 -2.6297 0.8834 24 1 0.9781 -2.6438 -0.9020 25 1 2.9604 -3.8776 -0.9798 26 1 2.4824 -4.3712 0.6776 27 1 6.3674 -1.8377 1.1032 28 1 6.0671 -3.3272 2.0304 29 1 9.5932 -2.5354 2.7374 30 1 4.1061 -0.5376 0.6137 31 1 4.0333 -1.2667 -1.0198 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260240650.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:59 Heat of formation + Delta-G solvation = -111.338660 kcal Electronic energy + Delta-G solvation = -14098.257106 eV Core-core repulsion = 11571.564417 eV Total energy + Delta-G solvation = -2526.692689 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.11109 -39.22887 -37.31048 -34.91956 -32.55055 -30.79903 -29.72057 -28.52431 -24.92925 -24.06958 -22.13547 -20.37448 -18.69964 -18.17384 -18.01517 -16.82606 -16.61720 -16.17902 -15.78699 -15.21200 -15.00877 -14.35008 -13.97831 -13.86243 -13.43816 -13.26982 -13.12849 -12.97772 -12.82081 -12.60740 -12.41214 -12.13383 -11.60791 -11.33891 -11.09473 -10.90239 -10.32039 -9.75355 -8.34469 -6.47893 1.39560 1.44505 1.52872 1.54698 1.88676 2.33793 2.99633 3.09065 3.46332 3.60762 3.89538 3.98918 4.25481 4.31837 4.50321 4.59196 4.61457 4.68836 4.73244 4.85133 5.00337 5.06331 5.10014 5.15019 5.19271 5.52841 5.91522 6.46738 6.49042 6.75383 7.06592 7.24078 8.77637 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.058733 B = 0.005910 C = 0.005589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.621306 B = 4736.921028 C = 5008.828782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.511 3.489 3 O -0.610 6.610 4 N -0.618 5.618 5 C 0.105 3.895 6 C -0.118 4.118 7 C 0.065 3.935 8 H 0.065 0.935 9 O -0.388 6.388 10 C 0.209 3.791 11 C -0.551 4.551 12 H 0.066 0.934 13 C 0.006 3.994 14 N -0.931 5.931 15 Si 0.985 3.015 16 H -0.267 1.267 17 H -0.276 1.276 18 H -0.261 1.261 19 C 0.085 3.915 20 H 0.114 0.886 21 H 0.096 0.904 22 H 0.112 0.888 23 H 0.104 0.896 24 H 0.107 0.893 25 H 0.086 0.914 26 H 0.110 0.890 27 H -0.019 1.019 28 H -0.009 1.009 29 H 0.271 0.729 30 H 0.044 0.956 31 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.598 -2.051 -3.740 18.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.303 3.697 3 O -0.493 6.493 4 N -0.353 5.353 5 C -0.016 4.016 6 C -0.156 4.156 7 C 0.005 3.995 8 H 0.083 0.917 9 O -0.307 6.307 10 C 0.134 3.866 11 C -0.589 4.589 12 H 0.084 0.916 13 C -0.192 4.192 14 N -0.570 5.570 15 Si 0.807 3.193 16 H -0.192 1.192 17 H -0.201 1.201 18 H -0.186 1.186 19 C -0.039 4.039 20 H 0.132 0.868 21 H 0.115 0.885 22 H 0.131 0.869 23 H 0.122 0.878 24 H 0.125 0.875 25 H 0.105 0.895 26 H 0.128 0.872 27 H -0.001 1.001 28 H 0.009 0.991 29 H 0.080 0.920 30 H 0.063 0.937 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -17.211 -1.501 -3.769 17.682 hybrid contribution 1.287 0.304 0.271 1.350 sum -15.924 -1.196 -3.498 16.347 Atomic orbital electron populations 1.21904 0.86226 1.06593 1.06528 1.21710 0.92635 0.81026 0.74320 1.90703 1.72474 1.32897 1.53179 1.48660 1.06294 1.07730 1.72583 1.22376 0.95702 0.78458 1.05062 1.22749 0.91318 0.98071 1.03459 1.23293 0.86152 0.92235 0.97811 0.91696 1.87858 1.15995 1.75406 1.51435 1.19895 0.84402 0.93465 0.88845 1.21368 0.92473 1.34981 1.10071 0.91607 1.25993 1.03018 0.95285 0.94933 1.70070 1.28536 1.40890 1.17553 0.85207 0.76602 0.79152 0.78303 1.19156 1.20107 1.18582 1.22528 0.82268 0.98341 1.00781 0.86774 0.88482 0.86902 0.87814 0.87461 0.89530 0.87174 1.00136 0.99085 0.92005 0.93690 0.91997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.90 71.24 0.71 -1.50 16 2 C 0.51 14.53 7.96 87.66 0.70 15.23 16 3 O -0.61 -24.50 17.35 -3.02 -0.05 -24.55 16 4 N -0.62 -17.17 3.33 -811.74 -2.70 -19.87 16 5 C 0.10 1.83 6.11 86.73 0.53 2.36 16 6 C -0.12 -2.79 6.69 31.78 0.21 -2.57 16 7 C 0.06 2.34 3.49 31.99 0.11 2.45 16 8 H 0.06 2.39 7.90 -2.39 -0.02 2.37 16 9 O -0.39 -18.59 10.14 -148.98 -1.51 -20.10 16 10 C 0.21 11.79 5.57 71.24 0.40 12.19 16 11 C -0.55 -32.87 9.43 25.60 0.24 -32.63 16 12 H 0.07 3.83 7.81 -2.91 -0.02 3.81 16 13 C 0.01 0.37 5.46 84.65 0.46 0.83 16 14 N -0.93 -56.64 13.29 21.45 0.28 -56.36 16 15 Si 0.98 44.41 29.54 68.60 2.03 46.44 16 16 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 17 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 18 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 19 C 0.09 3.14 6.64 86.86 0.58 3.72 16 20 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 21 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 22 H 0.11 0.88 7.12 -2.39 -0.02 0.86 16 23 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 24 H 0.11 1.20 7.86 -2.39 -0.02 1.18 16 25 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 26 H 0.11 2.09 8.14 -2.38 -0.02 2.07 16 27 H -0.02 -1.16 8.14 -2.39 -0.02 -1.18 16 28 H -0.01 -0.50 8.11 -2.39 -0.02 -0.52 16 29 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 30 H 0.04 1.91 8.04 -2.39 -0.02 1.89 16 31 H 0.06 2.42 8.14 -2.38 -0.02 2.40 16 Total: -1.00 -76.90 268.37 3.08 -73.82 By element: Atomic # 1 Polarization: -0.55 SS G_CDS: 1.10 Total: 0.54 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: 3.94 Total: 0.08 kcal Atomic # 7 Polarization: -73.82 SS G_CDS: -2.41 Total: -76.23 kcal Atomic # 8 Polarization: -43.08 SS G_CDS: -1.56 Total: -44.64 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -76.90 3.08 -73.82 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260240650.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.519 kcal (2) G-P(sol) polarization free energy of solvation -76.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds