Wall clock time and date at job start Sun Mar 29 2020 22:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21283 * 120.00262 * 2 1 4 4 N 1.34777 * 119.99928 * 179.71906 * 2 1 3 5 5 C 1.46931 * 120.63086 * 0.02562 * 4 2 1 6 6 C 1.53622 * 108.54424 * 126.36867 * 5 4 2 7 7 C 1.53036 * 109.24613 * 54.85288 * 6 5 4 8 8 C 1.53046 * 109.53689 * 298.51382 * 7 6 5 9 9 H 1.08997 * 109.52087 * 301.39246 * 8 7 6 10 10 O 1.42907 * 109.49414 * 181.31346 * 8 7 6 11 11 C 1.34925 * 116.99730 * 150.16130 * 10 8 7 12 12 H 1.08004 * 119.99786 * 359.97438 * 11 10 8 13 13 C 1.38632 * 119.99906 * 180.02562 * 11 10 8 14 14 N 1.31573 * 120.00146 * 359.97438 * 13 11 10 15 15 Si 1.86810 * 119.99907 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47028 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.46980 * 120.00072 * 15 13 11 18 18 H 1.48499 * 109.46758 * 239.99884 * 15 13 11 19 19 C 1.46925 * 120.62933 * 180.27723 * 4 2 1 20 20 H 1.09001 * 109.47107 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.46965 * 120.00305 * 1 2 3 22 22 H 1.08994 * 109.46990 * 240.00159 * 1 2 3 23 23 H 1.09000 * 109.58052 * 246.19939 * 5 4 2 24 24 H 1.08995 * 109.58699 * 6.62138 * 5 4 2 25 25 H 1.09003 * 109.63253 * 294.86246 * 6 5 4 26 26 H 1.08998 * 109.43170 * 174.72646 * 6 5 4 27 27 H 1.08995 * 109.46232 * 178.49380 * 7 6 5 28 28 H 1.09000 * 109.46110 * 58.53189 * 7 6 5 29 29 H 0.97004 * 120.00416 * 179.97438 * 14 13 11 30 30 H 1.08994 * 109.58707 * 353.37218 * 19 4 2 31 31 H 1.09003 * 109.58629 * 113.80427 * 19 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0057 5 6 1.4603 -2.4476 0.0114 6 6 1.9738 -3.3025 -1.1571 7 6 3.4946 -3.4372 -1.0535 8 6 4.1389 -2.0523 -1.1506 9 1 3.8597 -1.5862 -2.0955 10 8 5.5605 -2.1820 -1.0845 11 6 6.2912 -1.2555 -1.7388 12 1 5.7974 -0.4625 -2.2808 13 6 7.6757 -1.3222 -1.7164 14 7 8.2773 -2.2885 -1.0566 15 14 8.6874 -0.0390 -2.6218 16 1 7.7786 0.9335 -3.2802 17 1 9.5609 0.6745 -1.6559 18 1 9.5268 -0.7055 -3.6496 19 6 3.6500 -1.1833 0.0119 20 1 -0.3633 1.0277 -0.0005 21 1 -0.3633 -0.5139 -0.8900 22 1 -0.3633 -0.5138 0.8900 23 1 1.6419 -2.9648 0.9536 24 1 0.3922 -2.2664 -0.1082 25 1 1.7144 -2.8248 -2.1020 26 1 1.5170 -4.2911 -1.1114 27 1 3.8598 -4.0653 -1.8659 28 1 3.7546 -3.8923 -0.0978 29 1 9.2461 -2.3354 -1.0411 30 1 4.0271 -0.1677 -0.1075 31 1 4.0069 -1.5995 0.9541 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260337239.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:57 Heat of formation + Delta-G solvation = -76.726091 kcal Electronic energy + Delta-G solvation = -14602.962118 eV Core-core repulsion = 12077.770343 eV Total energy + Delta-G solvation = -2525.191775 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.82273 -37.41392 -35.58054 -32.44989 -31.57689 -30.51371 -28.60586 -24.81303 -24.57203 -22.36001 -20.44545 -18.72175 -17.50656 -16.88192 -15.62906 -15.52426 -14.97639 -14.25493 -13.97083 -13.87369 -13.22514 -12.95151 -12.65052 -12.41762 -12.35777 -11.99181 -11.54661 -11.31015 -10.97029 -10.79879 -10.67123 -10.29098 -9.97102 -9.77518 -9.56713 -9.12490 -8.39512 -7.91317 -5.95015 -3.58814 2.84088 3.25485 3.33236 3.37554 3.41879 4.32113 4.71307 4.88241 5.07993 5.19426 5.24375 5.33288 5.36135 5.49263 5.57328 5.72944 5.81078 5.91087 6.00171 6.14810 6.26434 6.39475 6.57324 6.76322 6.83099 6.95668 7.50582 7.68760 8.41101 8.43526 9.48979 10.13299 11.25677 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.038724 B = 0.008459 C = 0.007311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.893985 B = 3309.107827 C = 3829.113258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.505 3.495 3 O -0.549 6.549 4 N -0.608 5.608 5 C 0.106 3.894 6 C -0.131 4.131 7 C -0.116 4.116 8 C 0.089 3.911 9 H 0.042 0.958 10 O -0.281 6.281 11 C -0.361 4.361 12 H 0.064 0.936 13 C 0.024 3.976 14 N -0.889 5.889 15 Si 0.923 3.077 16 H -0.274 1.274 17 H -0.282 1.282 18 H -0.283 1.283 19 C 0.090 3.910 20 H 0.088 0.912 21 H 0.085 0.915 22 H 0.084 0.916 23 H 0.069 0.931 24 H 0.082 0.918 25 H 0.065 0.935 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.258 0.742 30 H 0.092 0.908 31 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.729 -1.609 1.301 15.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.293 3.707 3 O -0.427 6.427 4 N -0.343 5.343 5 C -0.017 4.017 6 C -0.169 4.169 7 C -0.154 4.154 8 C 0.029 3.971 9 H 0.060 0.940 10 O -0.195 6.195 11 C -0.440 4.440 12 H 0.082 0.918 13 C -0.174 4.174 14 N -0.532 5.532 15 Si 0.751 3.249 16 H -0.198 1.198 17 H -0.208 1.208 18 H -0.209 1.209 19 C -0.032 4.032 20 H 0.107 0.893 21 H 0.104 0.896 22 H 0.103 0.897 23 H 0.088 0.912 24 H 0.100 0.900 25 H 0.084 0.916 26 H 0.093 0.907 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.067 0.933 30 H 0.110 0.890 31 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -15.132 -1.255 1.433 15.251 hybrid contribution 0.418 0.688 -0.537 0.968 sum -14.714 -0.567 0.896 14.752 Atomic orbital electron populations 1.21923 0.92402 1.04990 1.03763 1.20770 0.90401 0.83356 0.76136 1.90717 1.70753 1.31095 1.50174 1.48247 1.07750 1.05622 1.72699 1.21864 0.96132 0.84464 0.99233 1.21975 0.96861 0.99678 0.98369 1.21560 0.92933 0.97885 1.03011 1.21984 0.86188 0.93438 0.95532 0.94025 1.85700 1.10649 1.50348 1.72791 1.20951 0.88601 1.05921 1.28556 0.91810 1.24937 0.95788 0.98026 0.98653 1.70025 1.08639 1.31880 1.42666 0.85910 0.79985 0.80127 0.78916 1.19835 1.20801 1.20875 1.22383 0.77013 1.03321 1.00494 0.89350 0.89619 0.89684 0.91233 0.89993 0.91641 0.90681 0.91231 0.91454 0.93252 0.88999 0.91331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.73 8.67 36.01 0.31 -1.42 16 2 C 0.50 8.20 7.81 -10.98 -0.09 8.12 16 3 O -0.55 -11.64 16.50 5.55 0.09 -11.54 16 4 N -0.61 -9.77 2.97 -172.52 -0.51 -10.28 16 5 C 0.11 1.23 6.37 -3.48 -0.02 1.21 16 6 C -0.13 -1.62 6.10 -26.39 -0.16 -1.78 16 7 C -0.12 -2.01 5.53 -26.69 -0.15 -2.16 16 8 C 0.09 1.95 2.80 -26.63 -0.07 1.88 16 9 H 0.04 0.95 7.80 -51.93 -0.41 0.54 16 10 O -0.28 -8.01 9.43 -16.49 -0.16 -8.17 16 11 C -0.36 -10.77 9.78 30.88 0.30 -10.47 16 12 H 0.06 1.84 7.65 -52.48 -0.40 1.44 16 13 C 0.02 0.72 5.49 -17.52 -0.10 0.63 16 14 N -0.89 -28.10 13.67 55.48 0.76 -27.34 16 15 Si 0.92 22.67 29.55 -169.99 -5.02 17.65 16 16 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 19 C 0.09 1.84 6.05 -3.73 -0.02 1.82 16 20 H 0.09 0.87 8.12 -51.93 -0.42 0.45 16 21 H 0.09 0.70 7.70 -51.93 -0.40 0.29 16 22 H 0.08 0.66 7.93 -51.93 -0.41 0.25 16 23 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 24 H 0.08 0.67 5.94 -51.93 -0.31 0.37 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 30 H 0.09 2.15 7.00 -51.93 -0.36 1.79 16 31 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 261.34 15.07 3.94 3.94 Total: -1.00 -35.62 261.34 -5.28 -40.90 By element: Atomic # 1 Polarization: 1.41 SS G_CDS: -4.38 Total: -2.98 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: 0.00 Total: -2.18 kcal Atomic # 7 Polarization: -37.86 SS G_CDS: 0.25 Total: -37.62 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: -0.06 Total: -19.71 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -35.62 -5.28 -40.90 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260337239.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.825 kcal (2) G-P(sol) polarization free energy of solvation -35.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds