Wall clock time and date at job start Sun Mar 29 2020 22:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21283 * 120.00262 * 2 1 4 4 N 1.34777 * 119.99928 * 179.71906 * 2 1 3 5 5 C 1.46931 * 120.63086 * 0.02562 * 4 2 1 6 6 C 1.53622 * 108.54424 * 126.36867 * 5 4 2 7 7 C 1.53036 * 109.24613 * 54.85288 * 6 5 4 8 8 C 1.53046 * 109.53689 * 298.51382 * 7 6 5 9 9 H 1.08997 * 109.52087 * 301.39246 * 8 7 6 10 10 O 1.42907 * 109.49414 * 181.31346 * 8 7 6 11 11 C 1.34925 * 116.99730 * 150.16130 * 10 8 7 12 12 H 1.08004 * 119.99786 * 359.97438 * 11 10 8 13 13 C 1.38632 * 119.99906 * 180.02562 * 11 10 8 14 14 N 1.31573 * 120.00146 * 359.97438 * 13 11 10 15 15 Si 1.86810 * 119.99907 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47028 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.46980 * 120.00072 * 15 13 11 18 18 H 1.48499 * 109.46758 * 239.99884 * 15 13 11 19 19 C 1.46925 * 120.62933 * 180.27723 * 4 2 1 20 20 H 1.09001 * 109.47107 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.46965 * 120.00305 * 1 2 3 22 22 H 1.08994 * 109.46990 * 240.00159 * 1 2 3 23 23 H 1.09000 * 109.58052 * 246.19939 * 5 4 2 24 24 H 1.08995 * 109.58699 * 6.62138 * 5 4 2 25 25 H 1.09003 * 109.63253 * 294.86246 * 6 5 4 26 26 H 1.08998 * 109.43170 * 174.72646 * 6 5 4 27 27 H 1.08995 * 109.46232 * 178.49380 * 7 6 5 28 28 H 1.09000 * 109.46110 * 58.53189 * 7 6 5 29 29 H 0.97004 * 120.00416 * 179.97438 * 14 13 11 30 30 H 1.08994 * 109.58707 * 353.37218 * 19 4 2 31 31 H 1.09003 * 109.58629 * 113.80427 * 19 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0057 5 6 1.4603 -2.4476 0.0114 6 6 1.9738 -3.3025 -1.1571 7 6 3.4946 -3.4372 -1.0535 8 6 4.1389 -2.0523 -1.1506 9 1 3.8597 -1.5862 -2.0955 10 8 5.5605 -2.1820 -1.0845 11 6 6.2912 -1.2555 -1.7388 12 1 5.7974 -0.4625 -2.2808 13 6 7.6757 -1.3222 -1.7164 14 7 8.2773 -2.2885 -1.0566 15 14 8.6874 -0.0390 -2.6218 16 1 7.7786 0.9335 -3.2802 17 1 9.5609 0.6745 -1.6559 18 1 9.5268 -0.7055 -3.6496 19 6 3.6500 -1.1833 0.0119 20 1 -0.3633 1.0277 -0.0005 21 1 -0.3633 -0.5139 -0.8900 22 1 -0.3633 -0.5138 0.8900 23 1 1.6419 -2.9648 0.9536 24 1 0.3922 -2.2664 -0.1082 25 1 1.7144 -2.8248 -2.1020 26 1 1.5170 -4.2911 -1.1114 27 1 3.8598 -4.0653 -1.8659 28 1 3.7546 -3.8923 -0.0978 29 1 9.2461 -2.3354 -1.0411 30 1 4.0271 -0.1677 -0.1075 31 1 4.0069 -1.5995 0.9541 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260337239.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:56 Heat of formation + Delta-G solvation = -103.302566 kcal Electronic energy + Delta-G solvation = -14604.114560 eV Core-core repulsion = 12077.770343 eV Total energy + Delta-G solvation = -2526.344218 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.16747 -39.07078 -37.29651 -34.22408 -33.32923 -31.84198 -29.84581 -26.79039 -26.11417 -23.75937 -21.90364 -20.13979 -19.55333 -18.20594 -17.36958 -16.96720 -16.44179 -15.94868 -15.59009 -15.37923 -14.69433 -14.26745 -14.04428 -13.95300 -13.51200 -13.22634 -13.20501 -12.99346 -12.73872 -12.18451 -12.13414 -11.92182 -11.75720 -11.53754 -11.22925 -10.86018 -10.32194 -9.61234 -8.23791 -5.93020 1.34479 1.39860 1.50646 1.60585 2.00272 2.29867 3.08952 3.53190 3.68363 3.94643 4.03352 4.11102 4.22073 4.30090 4.49318 4.54193 4.65778 4.75373 4.79995 4.81105 4.97784 5.04581 5.12434 5.14580 5.29936 5.40439 5.48100 6.16116 6.47643 7.15622 7.19746 7.96769 9.00493 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.038724 B = 0.008459 C = 0.007311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.893985 B = 3309.107827 C = 3829.113258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.493 3.507 3 O -0.613 6.613 4 N -0.608 5.608 5 C 0.100 3.900 6 C -0.120 4.120 7 C -0.112 4.112 8 C 0.082 3.918 9 H 0.025 0.975 10 O -0.321 6.321 11 C -0.376 4.376 12 H 0.060 0.940 13 C -0.037 4.037 14 N -0.935 5.935 15 Si 1.000 3.000 16 H -0.265 1.265 17 H -0.274 1.274 18 H -0.268 1.268 19 C 0.103 3.897 20 H 0.089 0.911 21 H 0.117 0.883 22 H 0.120 0.880 23 H 0.084 0.916 24 H 0.133 0.867 25 H 0.066 0.934 26 H 0.118 0.882 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.263 0.737 30 H 0.048 0.952 31 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.254 -2.136 1.001 18.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.284 3.716 3 O -0.496 6.496 4 N -0.342 5.342 5 C -0.020 4.020 6 C -0.158 4.158 7 C -0.150 4.150 8 C 0.022 3.978 9 H 0.043 0.957 10 O -0.235 6.235 11 C -0.455 4.455 12 H 0.078 0.922 13 C -0.230 4.230 14 N -0.579 5.579 15 Si 0.822 3.178 16 H -0.189 1.189 17 H -0.199 1.199 18 H -0.193 1.193 19 C -0.021 4.021 20 H 0.108 0.892 21 H 0.135 0.865 22 H 0.138 0.862 23 H 0.103 0.897 24 H 0.150 0.850 25 H 0.085 0.915 26 H 0.136 0.864 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -17.718 -1.821 1.134 17.848 hybrid contribution 1.122 0.810 -0.412 1.444 sum -16.596 -1.011 0.721 16.643 Atomic orbital electron populations 1.21957 0.86511 1.06291 1.06826 1.22076 0.93052 0.82144 0.74303 1.90690 1.72537 1.33387 1.52944 1.48383 1.05612 1.07928 1.72256 1.22304 0.98196 0.81965 0.99577 1.21988 0.92553 1.02369 0.98918 1.21583 0.96601 0.94257 1.02511 1.22337 0.83437 0.96791 0.95216 0.95670 1.85615 1.14116 1.50656 1.73127 1.21278 0.89465 1.06144 1.28649 0.92193 1.26127 0.96834 1.00489 0.99576 1.70166 1.09247 1.34096 1.44411 0.84786 0.78035 0.77193 0.77802 1.18933 1.19897 1.19325 1.21835 0.80761 1.00184 0.99331 0.89217 0.86469 0.86158 0.89730 0.84957 0.91518 0.86404 0.92277 0.91601 0.92858 0.93319 0.92051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 8.67 71.24 0.62 -1.88 16 2 C 0.49 15.41 7.81 87.66 0.68 16.10 16 3 O -0.61 -26.77 16.50 -3.04 -0.05 -26.82 16 4 N -0.61 -18.79 2.97 -818.13 -2.43 -21.21 16 5 C 0.10 1.89 6.37 86.51 0.55 2.44 16 6 C -0.12 -2.55 6.10 30.82 0.19 -2.37 16 7 C -0.11 -3.82 5.53 30.62 0.17 -3.65 16 8 C 0.08 3.73 2.80 30.66 0.09 3.82 16 9 H 0.03 1.20 7.80 -2.39 -0.02 1.19 16 10 O -0.32 -19.22 9.43 -81.94 -0.77 -19.99 16 11 C -0.38 -23.45 9.78 67.91 0.66 -22.79 16 12 H 0.06 3.64 7.65 -2.91 -0.02 3.62 16 13 C -0.04 -2.25 5.49 84.83 0.47 -1.78 16 14 N -0.93 -60.78 13.67 21.61 0.30 -60.48 16 15 Si 1.00 47.42 29.55 68.60 2.03 49.45 16 16 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 17 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 18 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 19 C 0.10 4.40 6.05 86.35 0.52 4.92 16 20 H 0.09 1.47 8.12 -2.39 -0.02 1.45 16 21 H 0.12 1.20 7.70 -2.38 -0.02 1.18 16 22 H 0.12 1.14 7.93 -2.39 -0.02 1.12 16 23 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.13 1.27 5.94 -2.39 -0.01 1.25 16 25 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 29 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 30 H 0.05 2.46 7.00 -2.39 -0.02 2.45 16 31 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 Total: -1.00 -84.20 261.34 4.13 -80.07 By element: Atomic # 1 Polarization: 3.06 SS G_CDS: 1.10 Total: 4.16 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: 3.95 Total: -5.18 kcal Atomic # 7 Polarization: -79.57 SS G_CDS: -2.13 Total: -81.70 kcal Atomic # 8 Polarization: -45.99 SS G_CDS: -0.82 Total: -46.81 kcal Atomic # 14 Polarization: 47.42 SS G_CDS: 2.03 Total: 49.45 kcal Total: -84.20 4.13 -80.07 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260337239.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.229 kcal (2) G-P(sol) polarization free energy of solvation -84.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds