Wall clock time and date at job start Sun Mar 29 2020 22:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99965 * 2 1 4 4 H 1.48497 * 109.47232 * 270.00141 * 3 2 1 5 5 H 1.48500 * 109.47052 * 30.00037 * 3 2 1 6 6 H 1.48501 * 109.47298 * 149.99647 * 3 2 1 7 7 C 1.37874 * 120.00255 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00327 * 179.97438 * 7 2 1 9 9 C 1.50710 * 119.99990 * 0.02562 * 7 2 1 10 10 C 1.53110 * 109.52360 * 179.97438 * 9 7 2 11 11 C 1.53032 * 109.27921 * 177.62155 * 10 9 7 12 12 N 1.46852 * 109.52437 * 300.82148 * 11 10 9 13 13 C 1.46902 * 110.99971 * 185.83517 * 12 11 10 14 14 C 1.53001 * 109.46901 * 169.99744 * 13 12 11 15 15 C 1.53000 * 109.46886 * 180.02562 * 14 13 12 16 16 O 1.42903 * 109.46726 * 180.02562 * 15 14 13 17 17 C 1.46848 * 111.19424 * 61.74147 * 12 11 10 18 18 C 1.53034 * 109.52086 * 298.25597 * 17 12 11 19 19 H 0.96999 * 120.00433 * 359.97438 * 1 2 3 20 20 H 1.08996 * 109.52053 * 59.86916 * 9 7 2 21 21 H 1.09000 * 109.50668 * 57.68020 * 10 9 7 22 22 H 1.08999 * 109.50680 * 297.56734 * 10 9 7 23 23 H 1.08999 * 109.46700 * 180.80460 * 11 10 9 24 24 H 1.09001 * 109.45697 * 60.83587 * 11 10 9 25 25 H 1.09001 * 109.46712 * 50.00147 * 13 12 11 26 26 H 1.09002 * 109.47411 * 290.00258 * 13 12 11 27 27 H 1.09001 * 109.46652 * 60.00371 * 14 13 12 28 28 H 1.08992 * 109.47514 * 300.00460 * 14 13 12 29 29 H 1.09002 * 109.47398 * 300.00496 * 15 14 13 30 30 H 1.09001 * 109.47194 * 60.00677 * 15 14 13 31 31 H 0.96700 * 113.99509 * 180.02562 * 16 15 14 32 32 H 1.09004 * 109.46425 * 58.27501 * 17 12 11 33 33 H 1.09002 * 109.45789 * 178.23868 * 17 12 11 34 34 H 1.08996 * 109.50601 * 299.24170 * 18 17 12 35 35 H 1.09006 * 109.50179 * 179.12409 * 18 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2450 -3.6638 0.0005 11 6 1.4752 -4.9851 0.0605 12 7 0.6534 -5.0195 1.2770 13 6 0.0070 -6.3287 1.4388 14 6 -0.6316 -6.4141 2.8265 15 6 -1.3043 -7.7780 2.9952 16 8 -1.9012 -7.8575 4.2912 17 6 -0.3404 -3.9384 1.2771 18 6 0.3753 -2.5859 1.2535 19 1 -0.4851 0.8400 0.0004 20 1 0.6227 -2.5570 -0.8882 21 1 2.8991 -3.5841 0.8688 22 1 2.8430 -3.6320 -0.9102 23 1 2.1805 -5.8160 0.0750 24 1 0.8317 -5.0704 -0.8151 25 1 0.7520 -7.1173 1.3325 26 1 -0.7625 -6.4507 0.6765 27 1 -1.3765 -5.6255 2.9328 28 1 0.1379 -6.2921 3.5887 29 1 -2.0737 -7.9004 2.2330 30 1 -0.5590 -8.5663 2.8892 31 1 -2.3466 -8.6974 4.4681 32 1 -0.9755 -4.0287 0.3958 33 1 -0.9539 -4.0091 2.1753 34 1 0.9999 -2.4892 2.1415 35 1 -0.3627 -1.7839 1.2379 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260485779.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:04 Heat of formation + Delta-G solvation = -66.523022 kcal Electronic energy + Delta-G solvation = -14584.704676 eV Core-core repulsion = 12195.788434 eV Total energy + Delta-G solvation = -2388.916242 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.42646 -36.98589 -34.33434 -32.22687 -30.17918 -29.75733 -26.15955 -24.05221 -22.34209 -21.64172 -20.46390 -18.55528 -17.39867 -16.34472 -15.65963 -15.34586 -14.45130 -14.21446 -13.59944 -13.52754 -13.10517 -12.59235 -12.37058 -12.27051 -11.63316 -11.30778 -11.03523 -10.88312 -10.83723 -10.63529 -10.38781 -10.16712 -10.01663 -9.92899 -9.37149 -8.92021 -8.65224 -8.25581 -7.72208 -5.93538 -3.98814 3.33942 3.40633 3.44410 4.00374 4.48405 4.65604 4.99013 5.19957 5.35934 5.37028 5.44540 5.60422 5.76600 5.81360 5.93136 6.12333 6.21335 6.28076 6.35522 6.38173 6.66935 6.68813 6.89605 7.12308 7.20983 7.47253 7.52332 7.66087 7.74237 7.87539 8.09337 8.20244 8.52437 9.04918 9.65461 11.12752 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.057001 B = 0.006183 C = 0.005804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.105639 B = 4527.151381 C = 4823.175849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.890 3.110 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.510 4.510 8 H 0.054 0.946 9 C 0.047 3.953 10 C -0.107 4.107 11 C 0.061 3.939 12 N -0.536 5.536 13 C 0.059 3.941 14 C -0.118 4.118 15 C 0.078 3.922 16 O -0.574 6.574 17 C 0.054 3.946 18 C -0.104 4.104 19 H 0.259 0.741 20 H 0.020 0.980 21 H 0.057 0.943 22 H 0.049 0.951 23 H 0.057 0.943 24 H 0.023 0.977 25 H 0.067 0.933 26 H 0.027 0.973 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.042 0.958 30 H 0.044 0.956 31 H 0.376 0.624 32 H 0.021 0.979 33 H 0.059 0.941 34 H 0.043 0.957 35 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.269 -13.434 3.126 13.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.718 3.282 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.548 4.548 8 H 0.072 0.928 9 C 0.028 3.972 10 C -0.144 4.144 11 C -0.067 4.067 12 N -0.261 5.261 13 C -0.070 4.070 14 C -0.156 4.156 15 C -0.001 4.001 16 O -0.379 6.379 17 C -0.073 4.073 18 C -0.143 4.143 19 H 0.069 0.931 20 H 0.038 0.962 21 H 0.075 0.925 22 H 0.068 0.932 23 H 0.075 0.925 24 H 0.041 0.959 25 H 0.086 0.914 26 H 0.045 0.955 27 H 0.090 0.910 28 H 0.095 0.905 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.222 0.778 32 H 0.039 0.961 33 H 0.077 0.923 34 H 0.062 0.938 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.855 -12.615 3.560 13.238 hybrid contribution -0.364 0.173 -0.814 0.909 sum -2.219 -12.442 2.745 12.933 Atomic orbital electron populations 1.69879 1.05882 1.26276 1.51170 1.24969 0.94832 0.99002 0.95228 0.86631 0.79936 0.83666 0.77975 1.20829 1.21302 1.19945 1.21219 0.92883 0.90687 1.50023 0.92752 1.18690 0.92725 0.91763 0.93976 1.21679 0.98720 0.93755 1.00285 1.22112 0.95675 0.99301 0.89585 1.61963 1.23760 1.01961 1.38384 1.21919 0.97030 0.92814 0.95235 1.21520 1.00465 0.95693 0.97924 1.22166 0.95741 0.98108 0.84036 1.86510 1.75302 1.41494 1.34631 1.22342 0.93148 0.93075 0.98742 1.21662 1.00191 0.93038 0.99383 0.93123 0.96209 0.92459 0.93196 0.92495 0.95881 0.91422 0.95516 0.90970 0.90461 0.93943 0.93800 0.77797 0.96052 0.92311 0.93798 0.88980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.80 11.37 55.43 0.63 -25.17 16 2 C 0.06 1.69 5.31 -17.82 -0.09 1.60 16 3 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.51 -14.24 8.56 -34.44 -0.29 -14.54 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.05 1.19 2.16 -91.65 -0.20 1.00 16 10 C -0.11 -2.29 5.32 -26.66 -0.14 -2.43 16 11 C 0.06 1.12 5.46 -3.83 -0.02 1.10 16 12 N -0.54 -9.85 4.66 -234.66 -1.09 -10.94 16 13 C 0.06 0.86 4.96 -3.82 -0.02 0.84 16 14 C -0.12 -1.64 5.51 -26.73 -0.15 -1.79 16 15 C 0.08 0.86 7.05 37.16 0.26 1.12 16 16 O -0.57 -6.62 13.66 -35.23 -0.48 -7.10 16 17 C 0.05 1.10 5.29 -3.83 -0.02 1.08 16 18 C -0.10 -2.54 5.12 -26.65 -0.14 -2.67 16 19 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 20 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 21 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 22 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 23 H 0.06 0.92 8.02 -51.93 -0.42 0.50 16 24 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.07 0.88 7.99 -51.93 -0.41 0.47 16 26 H 0.03 0.38 8.12 -51.93 -0.42 -0.04 16 27 H 0.07 1.10 6.43 -51.93 -0.33 0.77 16 28 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.38 2.36 9.12 45.56 0.42 2.78 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 1.12 6.21 -51.93 -0.32 0.79 16 34 H 0.04 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.09 2.47 6.18 -51.93 -0.32 2.15 16 LS Contribution 276.69 15.07 4.17 4.17 Total: -1.00 -30.19 276.69 -7.77 -37.96 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: -5.16 Total: -0.76 kcal Atomic # 6 Polarization: -13.89 SS G_CDS: -0.81 Total: -14.70 kcal Atomic # 7 Polarization: -35.65 SS G_CDS: -0.46 Total: -36.11 kcal Atomic # 8 Polarization: -6.62 SS G_CDS: -0.48 Total: -7.10 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -30.19 -7.77 -37.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260485779.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.564 kcal (2) G-P(sol) polarization free energy of solvation -30.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds