Wall clock time and date at job start Sun Mar 29 2020 22:24:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31515 * 1
3 3 Si 1.86797 * 119.99965 * 2 1
4 4 H 1.48497 * 109.47232 * 270.00141 * 3 2 1
5 5 H 1.48500 * 109.47052 * 30.00037 * 3 2 1
6 6 H 1.48501 * 109.47298 * 149.99647 * 3 2 1
7 7 C 1.37874 * 120.00255 * 179.97438 * 2 1 3
8 8 H 1.08000 * 120.00327 * 179.97438 * 7 2 1
9 9 C 1.50710 * 119.99990 * 0.02562 * 7 2 1
10 10 C 1.53110 * 109.52360 * 179.97438 * 9 7 2
11 11 C 1.53032 * 109.27921 * 177.62155 * 10 9 7
12 12 N 1.46852 * 109.52437 * 300.82148 * 11 10 9
13 13 C 1.46902 * 110.99971 * 185.83517 * 12 11 10
14 14 C 1.53001 * 109.46901 * 169.99744 * 13 12 11
15 15 C 1.53000 * 109.46886 * 180.02562 * 14 13 12
16 16 O 1.42903 * 109.46726 * 180.02562 * 15 14 13
17 17 C 1.46848 * 111.19424 * 61.74147 * 12 11 10
18 18 C 1.53034 * 109.52086 * 298.25597 * 17 12 11
19 19 H 0.96999 * 120.00433 * 359.97438 * 1 2 3
20 20 H 1.08996 * 109.52053 * 59.86916 * 9 7 2
21 21 H 1.09000 * 109.50668 * 57.68020 * 10 9 7
22 22 H 1.08999 * 109.50680 * 297.56734 * 10 9 7
23 23 H 1.08999 * 109.46700 * 180.80460 * 11 10 9
24 24 H 1.09001 * 109.45697 * 60.83587 * 11 10 9
25 25 H 1.09001 * 109.46712 * 50.00147 * 13 12 11
26 26 H 1.09002 * 109.47411 * 290.00258 * 13 12 11
27 27 H 1.09001 * 109.46652 * 60.00371 * 14 13 12
28 28 H 1.08992 * 109.47514 * 300.00460 * 14 13 12
29 29 H 1.09002 * 109.47398 * 300.00496 * 15 14 13
30 30 H 1.09001 * 109.47194 * 60.00677 * 15 14 13
31 31 H 0.96700 * 113.99509 * 180.02562 * 16 15 14
32 32 H 1.09004 * 109.46425 * 58.27501 * 17 12 11
33 33 H 1.09002 * 109.45789 * 178.23868 * 17 12 11
34 34 H 1.08996 * 109.50601 * 299.24170 * 18 17 12
35 35 H 1.09006 * 109.50179 * 179.12409 * 18 17 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 2.4966 2.0464 -1.4000
5 1 1.4466 2.6526 0.7000
6 1 3.5467 1.4402 0.7001
7 6 2.0046 -1.1940 0.0005
8 1 3.0846 -1.1940 0.0001
9 6 1.2511 -2.4992 0.0005
10 6 2.2450 -3.6638 0.0005
11 6 1.4752 -4.9851 0.0605
12 7 0.6534 -5.0195 1.2770
13 6 0.0070 -6.3287 1.4388
14 6 -0.6316 -6.4141 2.8265
15 6 -1.3043 -7.7780 2.9952
16 8 -1.9012 -7.8575 4.2912
17 6 -0.3404 -3.9384 1.2771
18 6 0.3753 -2.5859 1.2535
19 1 -0.4851 0.8400 0.0004
20 1 0.6227 -2.5570 -0.8882
21 1 2.8991 -3.5841 0.8688
22 1 2.8430 -3.6320 -0.9102
23 1 2.1805 -5.8160 0.0750
24 1 0.8317 -5.0704 -0.8151
25 1 0.7520 -7.1173 1.3325
26 1 -0.7625 -6.4507 0.6765
27 1 -1.3765 -5.6255 2.9328
28 1 0.1379 -6.2921 3.5887
29 1 -2.0737 -7.9004 2.2330
30 1 -0.5590 -8.5663 2.8892
31 1 -2.3466 -8.6974 4.4681
32 1 -0.9755 -4.0287 0.3958
33 1 -0.9539 -4.0091 2.1753
34 1 0.9999 -2.4892 2.1415
35 1 -0.3627 -1.7839 1.2379
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260485779.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 22:24:04
Heat of formation + Delta-G solvation = -88.679554 kcal
Electronic energy + Delta-G solvation = -14585.665456 eV
Core-core repulsion = 12195.788434 eV
Total energy + Delta-G solvation = -2389.877022 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 213.147 amu
Computer time = 0.23 seconds
Orbital eigenvalues (eV)
-39.95025 -37.93876 -36.00844 -33.94260 -31.72835 -31.45824 -27.89253 -25.51832
-23.95583 -23.24258 -21.72979 -20.36274 -18.46944 -18.22624 -16.91838 -16.66665
-16.33491 -15.62387 -15.02742 -14.83657 -14.69219 -14.31235 -13.97530 -13.82995
-13.09610 -12.87869 -12.82897 -12.58007 -12.17326 -12.07425 -12.01787 -11.86776
-11.81962 -11.31020 -10.85159 -10.79837 -10.61650 -10.37455 -9.18440 -8.07880
-6.21510 1.41053 1.42035 1.52477 2.44140 2.90844 3.18975 3.54743
3.98285 4.17769 4.25413 4.34830 4.38011 4.40747 4.55819 4.61494
4.68063 4.73265 4.77967 4.90078 4.97188 5.06685 5.21096 5.22907
5.31467 5.36021 5.56619 5.62905 6.00140 6.02737 6.29093 6.35783
6.40864 6.90325 6.95310 7.46429 8.96904
Molecular weight = 213.15amu
Principal moments of inertia in cm(-1)
A = 0.057001 B = 0.006183 C = 0.005804
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 491.105639 B = 4527.151381 C = 4823.175849
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.919 5.919
2 C 0.011 3.989
3 Si 0.954 3.046
4 H -0.275 1.275
5 H -0.283 1.283
6 H -0.269 1.269
7 C -0.534 4.534
8 H 0.051 0.949
9 C 0.042 3.958
10 C -0.101 4.101
11 C 0.066 3.934
12 N -0.546 5.546
13 C 0.061 3.939
14 C -0.117 4.117
15 C 0.082 3.918
16 O -0.598 6.598
17 C 0.067 3.933
18 C -0.096 4.096
19 H 0.260 0.740
20 H -0.012 1.012
21 H 0.050 0.950
22 H 0.055 0.945
23 H 0.092 0.908
24 H 0.022 0.978
25 H 0.093 0.907
26 H 0.035 0.965
27 H 0.051 0.949
28 H 0.063 0.937
29 H 0.056 0.944
30 H 0.065 0.935
31 H 0.398 0.602
32 H 0.014 0.986
33 H 0.070 0.930
34 H 0.029 0.971
35 H 0.060 0.940
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.763 -15.022 3.264 15.474
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.559 5.559
2 C -0.187 4.187
3 Si 0.780 3.220
4 H -0.201 1.201
5 H -0.209 1.209
6 H -0.193 1.193
7 C -0.572 4.572
8 H 0.070 0.930
9 C 0.024 3.976
10 C -0.139 4.139
11 C -0.061 4.061
12 N -0.271 5.271
13 C -0.066 4.066
14 C -0.155 4.155
15 C 0.004 3.996
16 O -0.407 6.407
17 C -0.060 4.060
18 C -0.135 4.135
19 H 0.069 0.931
20 H 0.006 0.994
21 H 0.069 0.931
22 H 0.074 0.926
23 H 0.110 0.890
24 H 0.041 0.959
25 H 0.112 0.888
26 H 0.053 0.947
27 H 0.070 0.930
28 H 0.082 0.918
29 H 0.074 0.926
30 H 0.084 0.916
31 H 0.248 0.752
32 H 0.032 0.968
33 H 0.088 0.912
34 H 0.048 0.952
35 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges -1.352 -14.237 3.701 14.772
hybrid contribution -0.537 0.645 -0.843 1.189
sum -1.889 -13.592 2.858 14.017
Atomic orbital electron populations
1.70021 1.07216 1.27066 1.51607 1.25760 0.95683 1.02431 0.94830
0.85613 0.78753 0.79416 0.78216 1.20082 1.20912 1.19325 1.21605
0.93029 0.92278 1.50288 0.93033 1.18675 0.93222 0.92790 0.92921
1.21552 0.97979 0.94074 1.00253 1.22062 0.96018 0.98422 0.89645
1.61906 1.23598 1.03217 1.38371 1.21997 0.97830 0.91047 0.95761
1.21469 0.99706 0.97167 0.97112 1.22093 0.96538 0.96652 0.84280
1.86445 1.75771 1.43584 1.34875 1.22065 0.93108 0.91893 0.98983
1.21430 0.99180 0.94709 0.98154 0.93094 0.99385 0.93098 0.92626
0.89015 0.95935 0.88847 0.94689 0.92982 0.91807 0.92624 0.91642
0.75198 0.96772 0.91160 0.95239 0.92167
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -54.49 11.37 21.45 0.24 -54.25 16
2 C 0.01 0.63 5.31 84.65 0.45 1.08 16
3 Si 0.95 44.64 29.54 68.60 2.03 46.67 16
4 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16
5 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16
6 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16
7 C -0.53 -30.44 8.56 25.60 0.22 -30.22 16
8 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16
9 C 0.04 2.21 2.16 -11.46 -0.02 2.19 16
10 C -0.10 -4.28 5.32 30.64 0.16 -4.12 16
11 C 0.07 2.30 5.46 86.32 0.47 2.77 16
12 N -0.55 -19.17 4.66 -896.34 -4.17 -23.35 16
13 C 0.06 1.62 4.96 86.30 0.43 2.04 16
14 C -0.12 -3.01 5.51 30.59 0.17 -2.84 16
15 C 0.08 1.57 7.05 71.98 0.51 2.08 16
16 O -0.60 -12.37 13.66 -148.98 -2.04 -14.41 16
17 C 0.07 2.73 5.29 86.32 0.46 3.19 16
18 C -0.10 -4.81 5.12 30.64 0.16 -4.66 16
19 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16
20 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16
21 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16
22 H 0.06 2.25 8.14 -2.39 -0.02 2.24 16
23 H 0.09 2.60 8.02 -2.39 -0.02 2.58 16
24 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16
25 H 0.09 2.03 7.99 -2.39 -0.02 2.01 16
26 H 0.03 0.89 8.12 -2.39 -0.02 0.87 16
27 H 0.05 1.53 6.43 -2.39 -0.02 1.52 16
28 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16
29 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16
30 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16
31 H 0.40 3.95 9.12 -74.06 -0.68 3.27 16
32 H 0.01 0.59 8.14 -2.38 -0.02 0.57 16
33 H 0.07 2.67 6.21 -2.39 -0.01 2.66 16
34 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16
35 H 0.06 3.37 6.18 -2.38 -0.01 3.35 16
Total: -1.00 -65.66 276.69 -0.57 -66.23
By element:
Atomic # 1 Polarization: 7.22 SS G_CDS: 0.38 Total: 7.59 kcal
Atomic # 6 Polarization: -31.48 SS G_CDS: 3.00 Total: -28.48 kcal
Atomic # 7 Polarization: -73.67 SS G_CDS: -3.93 Total: -77.60 kcal
Atomic # 8 Polarization: -12.37 SS G_CDS: -2.04 Total: -14.41 kcal
Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal
Total: -65.66 -0.57 -66.23 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260485779.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -22.453 kcal
(2) G-P(sol) polarization free energy of solvation -65.659 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.111 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.568 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.227 kcal
(6) G-S(sol) free energy of system = (1) + (5) -88.680 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.23 seconds