Wall clock time and date at job start Sun Mar 29 2020 22:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99965 * 2 1 4 4 H 1.48497 * 109.47232 * 270.00141 * 3 2 1 5 5 H 1.48500 * 109.47052 * 30.00037 * 3 2 1 6 6 H 1.48501 * 109.47298 * 149.99647 * 3 2 1 7 7 C 1.37874 * 120.00255 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00327 * 179.97438 * 7 2 1 9 9 C 1.50710 * 119.99990 * 0.02562 * 7 2 1 10 10 C 1.53110 * 109.52360 * 179.97438 * 9 7 2 11 11 C 1.53032 * 109.27921 * 177.62155 * 10 9 7 12 12 N 1.46852 * 109.52437 * 300.82148 * 11 10 9 13 13 C 1.46902 * 110.99971 * 185.83517 * 12 11 10 14 14 C 1.53001 * 109.46901 * 169.99744 * 13 12 11 15 15 C 1.53000 * 109.46886 * 180.02562 * 14 13 12 16 16 O 1.42903 * 109.46726 * 180.02562 * 15 14 13 17 17 C 1.46848 * 111.19424 * 61.74147 * 12 11 10 18 18 C 1.53034 * 109.52086 * 298.25597 * 17 12 11 19 19 H 0.96999 * 120.00433 * 359.97438 * 1 2 3 20 20 H 1.08996 * 109.52053 * 59.86916 * 9 7 2 21 21 H 1.09000 * 109.50668 * 57.68020 * 10 9 7 22 22 H 1.08999 * 109.50680 * 297.56734 * 10 9 7 23 23 H 1.08999 * 109.46700 * 180.80460 * 11 10 9 24 24 H 1.09001 * 109.45697 * 60.83587 * 11 10 9 25 25 H 1.09001 * 109.46712 * 50.00147 * 13 12 11 26 26 H 1.09002 * 109.47411 * 290.00258 * 13 12 11 27 27 H 1.09001 * 109.46652 * 60.00371 * 14 13 12 28 28 H 1.08992 * 109.47514 * 300.00460 * 14 13 12 29 29 H 1.09002 * 109.47398 * 300.00496 * 15 14 13 30 30 H 1.09001 * 109.47194 * 60.00677 * 15 14 13 31 31 H 0.96700 * 113.99509 * 180.02562 * 16 15 14 32 32 H 1.09004 * 109.46425 * 58.27501 * 17 12 11 33 33 H 1.09002 * 109.45789 * 178.23868 * 17 12 11 34 34 H 1.08996 * 109.50601 * 299.24170 * 18 17 12 35 35 H 1.09006 * 109.50179 * 179.12409 * 18 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2450 -3.6638 0.0005 11 6 1.4752 -4.9851 0.0605 12 7 0.6534 -5.0195 1.2770 13 6 0.0070 -6.3287 1.4388 14 6 -0.6316 -6.4141 2.8265 15 6 -1.3043 -7.7780 2.9952 16 8 -1.9012 -7.8575 4.2912 17 6 -0.3404 -3.9384 1.2771 18 6 0.3753 -2.5859 1.2535 19 1 -0.4851 0.8400 0.0004 20 1 0.6227 -2.5570 -0.8882 21 1 2.8991 -3.5841 0.8688 22 1 2.8430 -3.6320 -0.9102 23 1 2.1805 -5.8160 0.0750 24 1 0.8317 -5.0704 -0.8151 25 1 0.7520 -7.1173 1.3325 26 1 -0.7625 -6.4507 0.6765 27 1 -1.3765 -5.6255 2.9328 28 1 0.1379 -6.2921 3.5887 29 1 -2.0737 -7.9004 2.2330 30 1 -0.5590 -8.5663 2.8892 31 1 -2.3466 -8.6974 4.4681 32 1 -0.9755 -4.0287 0.3958 33 1 -0.9539 -4.0091 2.1753 34 1 0.9999 -2.4892 2.1415 35 1 -0.3627 -1.7839 1.2379 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260485779.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:04 Heat of formation + Delta-G solvation = -88.679554 kcal Electronic energy + Delta-G solvation = -14585.665456 eV Core-core repulsion = 12195.788434 eV Total energy + Delta-G solvation = -2389.877022 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.95025 -37.93876 -36.00844 -33.94260 -31.72835 -31.45824 -27.89253 -25.51832 -23.95583 -23.24258 -21.72979 -20.36274 -18.46944 -18.22624 -16.91838 -16.66665 -16.33491 -15.62387 -15.02742 -14.83657 -14.69219 -14.31235 -13.97530 -13.82995 -13.09610 -12.87869 -12.82897 -12.58007 -12.17326 -12.07425 -12.01787 -11.86776 -11.81962 -11.31020 -10.85159 -10.79837 -10.61650 -10.37455 -9.18440 -8.07880 -6.21510 1.41053 1.42035 1.52477 2.44140 2.90844 3.18975 3.54743 3.98285 4.17769 4.25413 4.34830 4.38011 4.40747 4.55819 4.61494 4.68063 4.73265 4.77967 4.90078 4.97188 5.06685 5.21096 5.22907 5.31467 5.36021 5.56619 5.62905 6.00140 6.02737 6.29093 6.35783 6.40864 6.90325 6.95310 7.46429 8.96904 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.057001 B = 0.006183 C = 0.005804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.105639 B = 4527.151381 C = 4823.175849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.011 3.989 3 Si 0.954 3.046 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.534 4.534 8 H 0.051 0.949 9 C 0.042 3.958 10 C -0.101 4.101 11 C 0.066 3.934 12 N -0.546 5.546 13 C 0.061 3.939 14 C -0.117 4.117 15 C 0.082 3.918 16 O -0.598 6.598 17 C 0.067 3.933 18 C -0.096 4.096 19 H 0.260 0.740 20 H -0.012 1.012 21 H 0.050 0.950 22 H 0.055 0.945 23 H 0.092 0.908 24 H 0.022 0.978 25 H 0.093 0.907 26 H 0.035 0.965 27 H 0.051 0.949 28 H 0.063 0.937 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.398 0.602 32 H 0.014 0.986 33 H 0.070 0.930 34 H 0.029 0.971 35 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.763 -15.022 3.264 15.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.187 4.187 3 Si 0.780 3.220 4 H -0.201 1.201 5 H -0.209 1.209 6 H -0.193 1.193 7 C -0.572 4.572 8 H 0.070 0.930 9 C 0.024 3.976 10 C -0.139 4.139 11 C -0.061 4.061 12 N -0.271 5.271 13 C -0.066 4.066 14 C -0.155 4.155 15 C 0.004 3.996 16 O -0.407 6.407 17 C -0.060 4.060 18 C -0.135 4.135 19 H 0.069 0.931 20 H 0.006 0.994 21 H 0.069 0.931 22 H 0.074 0.926 23 H 0.110 0.890 24 H 0.041 0.959 25 H 0.112 0.888 26 H 0.053 0.947 27 H 0.070 0.930 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.248 0.752 32 H 0.032 0.968 33 H 0.088 0.912 34 H 0.048 0.952 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.352 -14.237 3.701 14.772 hybrid contribution -0.537 0.645 -0.843 1.189 sum -1.889 -13.592 2.858 14.017 Atomic orbital electron populations 1.70021 1.07216 1.27066 1.51607 1.25760 0.95683 1.02431 0.94830 0.85613 0.78753 0.79416 0.78216 1.20082 1.20912 1.19325 1.21605 0.93029 0.92278 1.50288 0.93033 1.18675 0.93222 0.92790 0.92921 1.21552 0.97979 0.94074 1.00253 1.22062 0.96018 0.98422 0.89645 1.61906 1.23598 1.03217 1.38371 1.21997 0.97830 0.91047 0.95761 1.21469 0.99706 0.97167 0.97112 1.22093 0.96538 0.96652 0.84280 1.86445 1.75771 1.43584 1.34875 1.22065 0.93108 0.91893 0.98983 1.21430 0.99180 0.94709 0.98154 0.93094 0.99385 0.93098 0.92626 0.89015 0.95935 0.88847 0.94689 0.92982 0.91807 0.92624 0.91642 0.75198 0.96772 0.91160 0.95239 0.92167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.49 11.37 21.45 0.24 -54.25 16 2 C 0.01 0.63 5.31 84.65 0.45 1.08 16 3 Si 0.95 44.64 29.54 68.60 2.03 46.67 16 4 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 5 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 6 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 7 C -0.53 -30.44 8.56 25.60 0.22 -30.22 16 8 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 9 C 0.04 2.21 2.16 -11.46 -0.02 2.19 16 10 C -0.10 -4.28 5.32 30.64 0.16 -4.12 16 11 C 0.07 2.30 5.46 86.32 0.47 2.77 16 12 N -0.55 -19.17 4.66 -896.34 -4.17 -23.35 16 13 C 0.06 1.62 4.96 86.30 0.43 2.04 16 14 C -0.12 -3.01 5.51 30.59 0.17 -2.84 16 15 C 0.08 1.57 7.05 71.98 0.51 2.08 16 16 O -0.60 -12.37 13.66 -148.98 -2.04 -14.41 16 17 C 0.07 2.73 5.29 86.32 0.46 3.19 16 18 C -0.10 -4.81 5.12 30.64 0.16 -4.66 16 19 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 20 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 21 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 22 H 0.06 2.25 8.14 -2.39 -0.02 2.24 16 23 H 0.09 2.60 8.02 -2.39 -0.02 2.58 16 24 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.09 2.03 7.99 -2.39 -0.02 2.01 16 26 H 0.03 0.89 8.12 -2.39 -0.02 0.87 16 27 H 0.05 1.53 6.43 -2.39 -0.02 1.52 16 28 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.40 3.95 9.12 -74.06 -0.68 3.27 16 32 H 0.01 0.59 8.14 -2.38 -0.02 0.57 16 33 H 0.07 2.67 6.21 -2.39 -0.01 2.66 16 34 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.06 3.37 6.18 -2.38 -0.01 3.35 16 Total: -1.00 -65.66 276.69 -0.57 -66.23 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: 0.38 Total: 7.59 kcal Atomic # 6 Polarization: -31.48 SS G_CDS: 3.00 Total: -28.48 kcal Atomic # 7 Polarization: -73.67 SS G_CDS: -3.93 Total: -77.60 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: -2.04 Total: -14.41 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -65.66 -0.57 -66.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260485779.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.453 kcal (2) G-P(sol) polarization free energy of solvation -65.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds