Wall clock time and date at job start Sun Mar 29 2020 22:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00221 * 2 1 4 4 H 1.48499 * 109.46778 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.46784 * 299.99815 * 3 2 1 6 6 H 1.48503 * 109.47004 * 59.99516 * 3 2 1 7 7 C 1.37872 * 119.99633 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00017 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00240 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47257 * 179.97438 * 9 7 2 11 11 C 1.34778 * 120.00237 * 180.02562 * 10 9 7 12 12 O 1.21586 * 119.99918 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00253 * 180.02562 * 11 10 9 14 14 C 1.46502 * 120.00001 * 179.97438 * 13 11 10 15 15 H 1.09002 * 110.28750 * 325.69189 * 14 13 11 16 16 C 1.54259 * 110.32097 * 203.56879 * 14 13 11 17 17 C 1.54380 * 105.05727 * 240.99980 * 16 14 13 18 18 N 1.48559 * 104.59665 * 23.85363 * 17 16 14 19 19 C 1.48561 * 104.21990 * 320.51451 * 18 17 16 20 20 H 0.96998 * 119.99571 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47159 * 59.99819 * 9 7 2 22 22 H 1.09002 * 109.47393 * 299.99752 * 9 7 2 23 23 H 0.96998 * 120.00211 * 359.97438 * 10 9 7 24 24 H 0.96998 * 120.00195 * 359.97438 * 13 11 10 25 25 H 1.08994 * 110.32531 * 359.89300 * 16 14 13 26 26 H 1.08992 * 110.32465 * 122.10538 * 16 14 13 27 27 H 1.09005 * 110.41464 * 142.63601 * 17 16 14 28 28 H 1.08997 * 110.41291 * 265.07229 * 17 16 14 29 29 H 1.00900 * 110.99968 * 200.95709 * 18 17 16 30 30 H 1.08990 * 110.41371 * 280.70218 * 19 18 17 31 31 H 1.09004 * 110.40913 * 158.26121 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7536 -4.8834 0.0000 12 8 0.5582 -5.1055 0.0000 13 7 2.6294 -5.9078 0.0005 14 6 2.1410 -7.2890 0.0005 15 1 1.2185 -7.3637 0.5764 16 6 3.2122 -8.2360 0.5795 17 6 3.5399 -9.2186 -0.5653 18 7 3.1669 -8.4881 -1.8039 19 6 1.9116 -7.7790 -1.4453 20 1 -0.4849 0.8401 -0.0004 21 1 0.6246 -2.5570 -0.8897 22 1 0.6239 -2.5567 0.8903 23 1 3.1565 -3.4355 0.0002 24 1 3.5830 -5.7307 0.0009 25 1 4.1020 -7.6735 0.8620 26 1 2.8156 -8.7756 1.4395 27 1 4.6038 -9.4560 -0.5697 28 1 2.9471 -10.1280 -0.4671 29 1 3.0149 -9.1279 -2.5691 30 1 1.0640 -8.4631 -1.4849 31 1 1.7494 -6.9324 -2.1124 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260807178.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:55 Heat of formation + Delta-G solvation = -32.197146 kcal Electronic energy + Delta-G solvation = -14012.583016 eV Core-core repulsion = 11521.614912 eV Total energy + Delta-G solvation = -2490.968104 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.122 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.58299 -37.87947 -34.12929 -33.42708 -32.19156 -29.71534 -28.28698 -26.62640 -22.76403 -21.73364 -20.59569 -19.95953 -18.07584 -16.72020 -16.31592 -15.83451 -14.92141 -14.50343 -14.41863 -13.84266 -13.13866 -13.00524 -12.48539 -12.36117 -11.95179 -11.75687 -11.71661 -11.43780 -10.99276 -10.88455 -10.86896 -10.26464 -9.34215 -9.30838 -8.79528 -8.69708 -8.59313 -7.70103 -6.11864 -4.17990 3.26763 3.32903 3.36159 3.47060 3.97588 4.18707 4.36415 4.58330 4.70871 4.98744 5.17662 5.24386 5.30001 5.42256 5.54284 5.66350 5.75599 5.93808 6.08148 6.57022 7.00473 7.13997 7.20180 7.57667 7.61453 7.62031 7.96763 8.10251 8.81721 9.01161 9.39135 9.53588 10.98550 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.072090 B = 0.005456 C = 0.005313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 388.310882 B = 5130.563322 C = 5268.530743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.540 4.540 8 H 0.063 0.937 9 C 0.266 3.734 10 N -0.730 5.730 11 C 0.692 3.308 12 O -0.604 6.604 13 N -0.744 5.744 14 C 0.164 3.836 15 H 0.093 0.907 16 C -0.132 4.132 17 C 0.034 3.966 18 N -0.666 5.666 19 C 0.022 3.978 20 H 0.265 0.735 21 H 0.024 0.976 22 H 0.024 0.976 23 H 0.386 0.614 24 H 0.393 0.607 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.040 0.960 29 H 0.335 0.665 30 H 0.046 0.954 31 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.048 -15.653 -0.444 17.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.578 4.578 8 H 0.081 0.919 9 C 0.145 3.855 10 N -0.381 5.381 11 C 0.392 3.608 12 O -0.484 6.484 13 N -0.401 5.401 14 C 0.057 3.943 15 H 0.111 0.889 16 C -0.171 4.171 17 C -0.095 4.095 18 N -0.294 5.294 19 C -0.108 4.108 20 H 0.074 0.926 21 H 0.042 0.958 22 H 0.042 0.958 23 H 0.218 0.782 24 H 0.226 0.774 25 H 0.098 0.902 26 H 0.096 0.904 27 H 0.099 0.901 28 H 0.059 0.941 29 H 0.149 0.851 30 H 0.064 0.936 31 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 7.216 -15.097 -0.378 16.737 hybrid contribution 0.595 0.329 -0.028 0.681 sum 7.812 -14.768 -0.405 16.711 Atomic orbital electron populations 1.69995 1.06092 1.27094 1.49206 1.24946 0.94904 0.99394 0.94817 0.86360 0.79822 0.83008 0.77698 1.19664 1.20830 1.20841 1.21278 0.93314 0.90460 1.52789 0.91904 1.18973 0.87815 0.81136 0.97555 1.45711 1.10761 1.04447 1.77224 1.16195 0.85256 0.81134 0.78229 1.90859 1.14300 1.84293 1.58913 1.45210 1.08757 1.04416 1.81701 1.21326 0.97431 0.80716 0.94852 0.88913 1.22644 0.99411 0.97191 0.97822 1.22925 1.01093 0.95195 0.90316 1.63730 1.30946 1.28730 1.06022 1.23453 0.90522 0.98896 0.97966 0.92563 0.95788 0.95784 0.78164 0.77362 0.90236 0.90403 0.90143 0.94149 0.85052 0.93585 0.89369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.52 13.29 55.43 0.74 -25.78 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.54 -14.96 9.28 -34.44 -0.32 -15.28 16 8 H 0.06 1.63 7.60 -52.48 -0.40 1.24 16 9 C 0.27 7.29 5.43 -5.19 -0.03 7.27 16 10 N -0.73 -16.10 5.55 -66.41 -0.37 -16.46 16 11 C 0.69 14.69 8.56 -86.92 -0.74 13.94 16 12 O -0.60 -15.34 16.02 5.29 0.08 -15.26 16 13 N -0.74 -11.65 5.09 -57.32 -0.29 -11.94 16 14 C 0.16 2.23 3.38 -66.55 -0.22 2.00 16 15 H 0.09 1.42 7.60 -51.93 -0.39 1.02 16 16 C -0.13 -1.30 6.76 -25.35 -0.17 -1.47 16 17 C 0.03 0.30 7.47 -2.18 -0.02 0.29 16 18 N -0.67 -7.14 7.62 -109.66 -0.84 -7.97 16 19 C 0.02 0.29 7.19 -2.18 -0.02 0.27 16 20 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 21 H 0.02 0.73 8.14 -51.93 -0.42 0.30 16 22 H 0.02 0.73 8.14 -51.93 -0.42 0.30 16 23 H 0.39 7.35 8.34 -40.82 -0.34 7.00 16 24 H 0.39 5.19 8.34 -40.82 -0.34 4.85 16 25 H 0.08 0.75 7.65 -51.93 -0.40 0.35 16 26 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.33 2.97 8.92 -39.29 -0.35 2.62 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.09 1.37 8.06 -51.93 -0.42 0.95 16 LS Contribution 265.61 15.07 4.00 4.00 Total: -1.00 -32.89 265.61 -7.62 -40.52 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -4.31 Total: 8.10 kcal Atomic # 6 Polarization: 10.31 SS G_CDS: -1.62 Total: 8.69 kcal Atomic # 7 Polarization: -61.40 SS G_CDS: -0.76 Total: -62.16 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: 0.08 Total: -15.26 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -32.89 -7.62 -40.52 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260807178.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.320 kcal (2) G-P(sol) polarization free energy of solvation -32.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds