Wall clock time and date at job start Sun Mar 29 2020 22:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00221 * 2 1 4 4 H 1.48499 * 109.46778 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.46784 * 299.99815 * 3 2 1 6 6 H 1.48503 * 109.47004 * 59.99516 * 3 2 1 7 7 C 1.37872 * 119.99633 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00017 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00240 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47257 * 179.97438 * 9 7 2 11 11 C 1.34778 * 120.00237 * 180.02562 * 10 9 7 12 12 O 1.21586 * 119.99918 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00253 * 180.02562 * 11 10 9 14 14 C 1.46502 * 120.00001 * 179.97438 * 13 11 10 15 15 H 1.09002 * 110.28750 * 325.69189 * 14 13 11 16 16 C 1.54259 * 110.32097 * 203.56879 * 14 13 11 17 17 C 1.54380 * 105.05727 * 240.99980 * 16 14 13 18 18 N 1.48559 * 104.59665 * 23.85363 * 17 16 14 19 19 C 1.48561 * 104.21990 * 320.51451 * 18 17 16 20 20 H 0.96998 * 119.99571 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47159 * 59.99819 * 9 7 2 22 22 H 1.09002 * 109.47393 * 299.99752 * 9 7 2 23 23 H 0.96998 * 120.00211 * 359.97438 * 10 9 7 24 24 H 0.96998 * 120.00195 * 359.97438 * 13 11 10 25 25 H 1.08994 * 110.32531 * 359.89300 * 16 14 13 26 26 H 1.08992 * 110.32465 * 122.10538 * 16 14 13 27 27 H 1.09005 * 110.41464 * 142.63601 * 17 16 14 28 28 H 1.08997 * 110.41291 * 265.07229 * 17 16 14 29 29 H 1.00900 * 110.99968 * 200.95709 * 18 17 16 30 30 H 1.08990 * 110.41371 * 280.70218 * 19 18 17 31 31 H 1.09004 * 110.40913 * 158.26121 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7536 -4.8834 0.0000 12 8 0.5582 -5.1055 0.0000 13 7 2.6294 -5.9078 0.0005 14 6 2.1410 -7.2890 0.0005 15 1 1.2185 -7.3637 0.5764 16 6 3.2122 -8.2360 0.5795 17 6 3.5399 -9.2186 -0.5653 18 7 3.1669 -8.4881 -1.8039 19 6 1.9116 -7.7790 -1.4453 20 1 -0.4849 0.8401 -0.0004 21 1 0.6246 -2.5570 -0.8897 22 1 0.6239 -2.5567 0.8903 23 1 3.1565 -3.4355 0.0002 24 1 3.5830 -5.7307 0.0009 25 1 4.1020 -7.6735 0.8620 26 1 2.8156 -8.7756 1.4395 27 1 4.6038 -9.4560 -0.5697 28 1 2.9471 -10.1280 -0.4671 29 1 3.0149 -9.1279 -2.5691 30 1 1.0640 -8.4631 -1.4849 31 1 1.7494 -6.9324 -2.1124 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260807178.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:55 Heat of formation + Delta-G solvation = -60.382858 kcal Electronic energy + Delta-G solvation = -14013.805240 eV Core-core repulsion = 11521.614912 eV Total energy + Delta-G solvation = -2492.190328 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.122 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.08222 -39.11336 -36.11816 -34.91470 -34.18656 -30.70476 -29.66125 -28.36888 -24.76376 -22.78489 -21.84781 -21.44113 -19.80287 -18.12029 -17.61986 -17.47216 -16.67125 -16.26694 -15.80693 -15.11071 -14.91648 -14.25573 -14.05279 -13.99376 -13.29834 -13.20290 -12.89157 -12.74043 -12.69509 -12.40815 -12.20815 -11.86342 -11.43367 -11.18446 -10.80468 -10.25438 -9.62290 -9.49771 -8.27548 -6.43874 1.44388 1.46057 1.59376 1.92517 2.25770 2.40901 3.07561 3.33780 3.54955 3.72377 3.76932 4.24134 4.33065 4.44485 4.69924 4.79902 4.90413 5.04830 5.08828 5.14317 5.28190 5.50127 5.57583 5.67714 5.81888 5.86716 6.29230 6.40006 6.68317 7.25694 7.34008 7.75126 8.85230 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.072090 B = 0.005456 C = 0.005313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 388.310882 B = 5130.563322 C = 5268.530743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.987 3.013 4 H -0.253 1.253 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.554 4.554 8 H 0.083 0.917 9 C 0.285 3.715 10 N -0.724 5.724 11 C 0.690 3.310 12 O -0.650 6.650 13 N -0.720 5.720 14 C 0.152 3.848 15 H 0.072 0.928 16 C -0.123 4.123 17 C 0.038 3.962 18 N -0.671 5.671 19 C 0.027 3.973 20 H 0.269 0.731 21 H -0.016 1.016 22 H -0.014 1.014 23 H 0.404 0.596 24 H 0.409 0.591 25 H 0.088 0.912 26 H 0.095 0.905 27 H 0.098 0.902 28 H 0.057 0.943 29 H 0.346 0.654 30 H 0.055 0.945 31 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.691 -16.226 -0.260 19.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.810 3.190 4 H -0.177 1.177 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.592 4.592 8 H 0.101 0.899 9 C 0.162 3.838 10 N -0.378 5.378 11 C 0.390 3.610 12 O -0.533 6.533 13 N -0.376 5.376 14 C 0.046 3.954 15 H 0.090 0.910 16 C -0.162 4.162 17 C -0.091 4.091 18 N -0.302 5.302 19 C -0.104 4.104 20 H 0.078 0.922 21 H 0.002 0.998 22 H 0.004 0.996 23 H 0.239 0.761 24 H 0.245 0.755 25 H 0.107 0.893 26 H 0.114 0.886 27 H 0.117 0.883 28 H 0.075 0.925 29 H 0.163 0.837 30 H 0.073 0.927 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 9.941 -15.738 -0.198 18.616 hybrid contribution -0.249 0.390 -0.095 0.472 sum 9.692 -15.348 -0.293 18.155 Atomic orbital electron populations 1.70154 1.08298 1.28499 1.50088 1.26072 0.95784 1.03886 0.93851 0.85077 0.79019 0.77194 0.77687 1.17689 1.20439 1.20380 1.21633 0.94298 0.90484 1.52752 0.89881 1.18408 0.88126 0.83412 0.93893 1.45309 1.10844 1.03888 1.77711 1.16367 0.85205 0.81656 0.77777 1.90824 1.16709 1.84969 1.60809 1.45026 1.08797 1.04094 1.79722 1.21591 0.98265 0.79939 0.95608 0.90980 1.22653 0.98260 0.96528 0.98720 1.23008 1.02441 0.95106 0.88579 1.63682 1.29309 1.29750 1.07416 1.23253 0.92198 0.98384 0.96608 0.92240 0.99786 0.99635 0.76093 0.75457 0.89312 0.88625 0.88342 0.92511 0.83738 0.92675 0.92598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.07 13.29 21.45 0.28 -56.79 16 2 C 0.00 0.20 5.46 84.65 0.46 0.66 16 3 Si 0.99 42.88 29.54 68.60 2.03 44.91 16 4 H -0.25 -10.17 7.11 99.48 0.71 -9.46 16 5 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 6 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 7 C -0.55 -30.82 9.28 25.60 0.24 -30.58 16 8 H 0.08 4.19 7.60 -2.91 -0.02 4.17 16 9 C 0.28 16.24 5.43 85.63 0.46 16.71 16 10 N -0.72 -32.45 5.55 -482.30 -2.68 -35.13 16 11 C 0.69 29.92 8.56 179.05 1.53 31.45 16 12 O -0.65 -34.51 16.02 -3.99 -0.06 -34.57 16 13 N -0.72 -22.08 5.09 -453.53 -2.31 -24.39 16 14 C 0.15 4.01 3.38 45.89 0.16 4.16 16 15 H 0.07 2.22 7.60 -2.39 -0.02 2.20 16 16 C -0.12 -2.07 6.76 31.49 0.21 -1.86 16 17 C 0.04 0.54 7.47 86.45 0.65 1.18 16 18 N -0.67 -12.91 7.62 -500.86 -3.82 -16.73 16 19 C 0.03 0.67 7.19 86.45 0.62 1.29 16 20 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 21 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 22 H -0.01 -0.91 8.14 -2.39 -0.02 -0.93 16 23 H 0.40 15.04 8.34 -92.71 -0.77 14.27 16 24 H 0.41 10.03 8.34 -92.71 -0.77 9.26 16 25 H 0.09 1.36 7.65 -2.39 -0.02 1.34 16 26 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.10 1.12 8.14 -2.38 -0.02 1.11 16 28 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.35 5.36 8.92 -89.69 -0.80 4.56 16 30 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.06 1.78 8.06 -2.38 -0.02 1.76 16 Total: -1.00 -73.64 265.61 -3.41 -77.05 By element: Atomic # 1 Polarization: 23.82 SS G_CDS: -1.19 Total: 22.63 kcal Atomic # 6 Polarization: 18.68 SS G_CDS: 4.33 Total: 23.02 kcal Atomic # 7 Polarization: -124.51 SS G_CDS: -8.52 Total: -133.03 kcal Atomic # 8 Polarization: -34.51 SS G_CDS: -0.06 Total: -34.57 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -73.64 -3.41 -77.05 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260807178.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.670 kcal (2) G-P(sol) polarization free energy of solvation -73.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds