Wall clock time and date at job start Sun Mar 29 2020 22:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 119.99875 * 2 1 4 4 H 1.48497 * 109.47173 * 239.99532 * 3 2 1 5 5 H 1.48499 * 109.47306 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47084 * 119.99680 * 3 2 1 7 7 C 1.37878 * 120.00052 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00073 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00210 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.47083 * 179.97438 * 9 7 2 11 11 C 1.34780 * 119.99702 * 180.02562 * 10 9 7 12 12 O 1.21586 * 119.99898 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99923 * 180.02562 * 11 10 9 14 14 C 1.46494 * 119.99811 * 180.02562 * 13 11 10 15 15 H 1.08993 * 110.28246 * 35.62901 * 14 13 11 16 16 C 1.54591 * 110.39246 * 157.78136 * 14 13 11 17 17 C 1.54933 * 102.92615 * 140.91114 * 16 14 13 18 18 N 1.48534 * 103.22918 * 322.58639 * 17 16 14 19 19 C 1.47906 * 105.81681 * 39.20123 * 18 17 16 20 20 H 0.96994 * 120.00146 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.46854 * 60.00209 * 9 7 2 22 22 H 1.08997 * 109.47004 * 299.99817 * 9 7 2 23 23 H 0.96991 * 119.99993 * 0.02562 * 10 9 7 24 24 H 0.97000 * 119.99613 * 359.97438 * 13 11 10 25 25 H 1.09008 * 110.72317 * 259.27219 * 16 14 13 26 26 H 1.09002 * 110.72589 * 22.55330 * 16 14 13 27 27 H 1.09004 * 110.67035 * 204.14644 * 17 16 14 28 28 H 1.09002 * 110.66721 * 81.02111 * 17 16 14 29 29 H 1.00905 * 110.99850 * 278.69336 * 18 17 16 30 30 H 1.09003 * 109.91125 * 94.02808 * 19 18 17 31 31 H 1.08999 * 109.91852 * 215.31941 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2032 -3.6127 0.0005 11 6 1.7539 -4.8834 0.0000 12 8 0.5585 -5.1055 -0.0009 13 7 2.6297 -5.9078 0.0005 14 6 2.1414 -7.2889 -0.0006 15 1 1.2327 -7.3679 -0.5972 16 6 3.2271 -8.2437 -0.5478 17 6 3.0862 -9.4880 0.3646 18 7 2.7877 -8.9012 1.6960 19 6 1.8776 -7.7637 1.4404 20 1 -0.4850 0.8400 -0.0004 21 1 0.6248 -2.5571 -0.8897 22 1 0.6241 -2.5567 0.8903 23 1 3.1567 -3.4354 0.0009 24 1 3.5834 -5.7305 0.0009 25 1 3.0249 -8.5026 -1.5872 26 1 4.2177 -7.8006 -0.4453 27 1 4.0186 -10.0520 0.3929 28 1 2.2635 -10.1196 0.0294 29 1 3.6329 -8.5924 2.1528 30 1 0.8416 -8.0873 1.5410 31 1 2.0868 -6.9559 2.1417 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260807179.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:58 Heat of formation + Delta-G solvation = -33.131992 kcal Electronic energy + Delta-G solvation = -13998.251187 eV Core-core repulsion = 11507.242545 eV Total energy + Delta-G solvation = -2491.008642 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.122 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.69053 -38.00013 -34.18761 -33.52171 -32.23234 -29.52981 -28.27693 -26.61556 -22.79830 -21.98540 -20.67539 -20.02311 -18.08872 -16.98082 -16.03819 -15.45192 -15.32496 -14.59054 -14.38836 -13.99424 -13.61558 -13.17352 -12.47506 -12.04049 -11.93312 -11.88677 -11.52802 -11.44806 -10.98193 -10.91475 -10.85795 -10.29790 -9.42366 -9.38155 -9.24283 -8.72380 -8.43591 -7.75520 -6.14789 -4.21622 3.25926 3.27886 3.31427 3.36587 3.90659 4.14079 4.33336 4.54511 4.82003 4.94328 5.10821 5.21119 5.24050 5.40918 5.44061 5.66861 5.77273 6.03178 6.09924 6.57463 6.85231 7.10964 7.20698 7.51224 7.54892 7.57516 7.90762 8.04496 8.76369 8.93969 9.33150 9.48210 10.95458 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.078120 B = 0.005348 C = 0.005219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 358.337404 B = 5234.270442 C = 5363.566931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.543 4.543 8 H 0.061 0.939 9 C 0.267 3.733 10 N -0.729 5.729 11 C 0.691 3.309 12 O -0.599 6.599 13 N -0.752 5.752 14 C 0.137 3.863 15 H 0.094 0.906 16 C -0.164 4.164 17 C 0.044 3.956 18 N -0.676 5.676 19 C 0.030 3.970 20 H 0.266 0.734 21 H 0.024 0.976 22 H 0.025 0.975 23 H 0.386 0.614 24 H 0.389 0.611 25 H 0.080 0.920 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.335 0.665 30 H 0.083 0.917 31 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.178 -14.338 0.128 17.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.201 1.201 7 C -0.581 4.581 8 H 0.080 0.920 9 C 0.146 3.854 10 N -0.381 5.381 11 C 0.391 3.609 12 O -0.478 6.478 13 N -0.409 5.409 14 C 0.029 3.971 15 H 0.112 0.888 16 C -0.204 4.204 17 C -0.086 4.086 18 N -0.302 5.302 19 C -0.101 4.101 20 H 0.076 0.924 21 H 0.042 0.958 22 H 0.043 0.957 23 H 0.218 0.782 24 H 0.223 0.777 25 H 0.099 0.901 26 H 0.091 0.909 27 H 0.094 0.906 28 H 0.101 0.899 29 H 0.150 0.850 30 H 0.102 0.898 31 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 7.332 -14.850 0.357 16.565 hybrid contribution 1.927 1.857 -0.461 2.715 sum 9.258 -12.993 -0.104 15.954 Atomic orbital electron populations 1.69966 1.06096 1.27394 1.48826 1.24941 0.94910 0.99383 0.94748 0.86468 0.79399 0.82341 0.78636 1.20114 1.21050 1.20098 1.21186 0.93201 0.90470 1.53285 0.92045 1.18978 0.87781 0.81060 0.97609 1.45729 1.10748 1.04455 1.77203 1.16194 0.85285 0.81096 0.78315 1.90873 1.14196 1.84193 1.58547 1.45305 1.08588 1.04758 1.82225 1.21974 0.97776 0.80310 0.97008 0.88789 1.23387 0.98966 0.96886 1.01181 1.23087 1.01562 0.95980 0.88003 1.62762 1.18373 1.29214 1.19876 1.23265 0.98460 0.92387 0.96037 0.92390 0.95764 0.95725 0.78237 0.77734 0.90118 0.90945 0.90574 0.89896 0.84958 0.89835 0.90844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.32 13.29 55.43 0.74 -25.58 16 2 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 4 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 7 C -0.54 -14.88 9.28 -34.44 -0.32 -15.20 16 8 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 9 C 0.27 7.22 5.43 -5.19 -0.03 7.20 16 10 N -0.73 -15.74 5.55 -66.41 -0.37 -16.11 16 11 C 0.69 14.36 8.56 -86.91 -0.74 13.62 16 12 O -0.60 -15.09 16.04 5.29 0.08 -15.01 16 13 N -0.75 -11.17 5.03 -57.35 -0.29 -11.45 16 14 C 0.14 1.81 3.29 -66.58 -0.22 1.59 16 15 H 0.09 1.45 7.64 -51.93 -0.40 1.05 16 16 C -0.16 -1.53 6.77 -24.88 -0.17 -1.69 16 17 C 0.04 0.38 7.55 -1.90 -0.01 0.36 16 18 N -0.68 -7.09 7.51 -110.08 -0.83 -7.91 16 19 C 0.03 0.38 7.31 -2.75 -0.02 0.36 16 20 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 21 H 0.02 0.73 8.14 -51.93 -0.42 0.30 16 22 H 0.02 0.74 8.14 -51.93 -0.42 0.31 16 23 H 0.39 7.09 8.33 -40.82 -0.34 6.75 16 24 H 0.39 4.62 8.37 -40.82 -0.34 4.28 16 25 H 0.08 0.70 8.14 -51.92 -0.42 0.28 16 26 H 0.07 0.60 7.74 -51.93 -0.40 0.20 16 27 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.34 3.06 8.92 -39.29 -0.35 2.71 16 30 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.07 1.04 7.92 -51.93 -0.41 0.63 16 LS Contribution 265.61 15.07 4.00 4.00 Total: -1.00 -32.56 265.61 -7.60 -40.16 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -4.31 Total: 8.08 kcal Atomic # 6 Polarization: 9.53 SS G_CDS: -1.61 Total: 7.92 kcal Atomic # 7 Polarization: -60.31 SS G_CDS: -0.75 Total: -61.06 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: 0.08 Total: -15.01 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -32.56 -7.60 -40.16 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260807179.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.030 kcal (2) G-P(sol) polarization free energy of solvation -32.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds