Wall clock time and date at job start Sun Mar 29 2020 22:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 119.99875 * 2 1 4 4 H 1.48497 * 109.47173 * 239.99532 * 3 2 1 5 5 H 1.48499 * 109.47306 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47084 * 119.99680 * 3 2 1 7 7 C 1.37878 * 120.00052 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00073 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00210 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.47083 * 179.97438 * 9 7 2 11 11 C 1.34780 * 119.99702 * 180.02562 * 10 9 7 12 12 O 1.21586 * 119.99898 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99923 * 180.02562 * 11 10 9 14 14 C 1.46494 * 119.99811 * 180.02562 * 13 11 10 15 15 H 1.08993 * 110.28246 * 35.62901 * 14 13 11 16 16 C 1.54591 * 110.39246 * 157.78136 * 14 13 11 17 17 C 1.54933 * 102.92615 * 140.91114 * 16 14 13 18 18 N 1.48534 * 103.22918 * 322.58639 * 17 16 14 19 19 C 1.47906 * 105.81681 * 39.20123 * 18 17 16 20 20 H 0.96994 * 120.00146 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.46854 * 60.00209 * 9 7 2 22 22 H 1.08997 * 109.47004 * 299.99817 * 9 7 2 23 23 H 0.96991 * 119.99993 * 0.02562 * 10 9 7 24 24 H 0.97000 * 119.99613 * 359.97438 * 13 11 10 25 25 H 1.09008 * 110.72317 * 259.27219 * 16 14 13 26 26 H 1.09002 * 110.72589 * 22.55330 * 16 14 13 27 27 H 1.09004 * 110.67035 * 204.14644 * 17 16 14 28 28 H 1.09002 * 110.66721 * 81.02111 * 17 16 14 29 29 H 1.00905 * 110.99850 * 278.69336 * 18 17 16 30 30 H 1.09003 * 109.91125 * 94.02808 * 19 18 17 31 31 H 1.08999 * 109.91852 * 215.31941 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2032 -3.6127 0.0005 11 6 1.7539 -4.8834 0.0000 12 8 0.5585 -5.1055 -0.0009 13 7 2.6297 -5.9078 0.0005 14 6 2.1414 -7.2889 -0.0006 15 1 1.2327 -7.3679 -0.5972 16 6 3.2271 -8.2437 -0.5478 17 6 3.0862 -9.4880 0.3646 18 7 2.7877 -8.9012 1.6960 19 6 1.8776 -7.7637 1.4404 20 1 -0.4850 0.8400 -0.0004 21 1 0.6248 -2.5571 -0.8897 22 1 0.6241 -2.5567 0.8903 23 1 3.1567 -3.4354 0.0009 24 1 3.5834 -5.7305 0.0009 25 1 3.0249 -8.5026 -1.5872 26 1 4.2177 -7.8006 -0.4453 27 1 4.0186 -10.0520 0.3929 28 1 2.2635 -10.1196 0.0294 29 1 3.6329 -8.5924 2.1528 30 1 0.8416 -8.0873 1.5410 31 1 2.0868 -6.9559 2.1417 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260807179.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:58 Heat of formation + Delta-G solvation = -61.030156 kcal Electronic energy + Delta-G solvation = -13999.460942 eV Core-core repulsion = 11507.242545 eV Total energy + Delta-G solvation = -2492.218397 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.122 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.15071 -39.23451 -36.14766 -34.99250 -34.21011 -30.48955 -29.69697 -28.30414 -24.76685 -22.97343 -21.96866 -21.48051 -19.81273 -18.14912 -17.91429 -16.95392 -16.62525 -16.31448 -15.91986 -15.12036 -14.95361 -14.87195 -14.09452 -14.02746 -13.25269 -13.00722 -12.83209 -12.69194 -12.56818 -12.37153 -12.23359 -11.80681 -11.50087 -11.24166 -10.79600 -10.50674 -9.82940 -9.35334 -8.28267 -6.45181 1.43541 1.48126 1.56193 1.85314 2.21379 2.39759 3.06636 3.26477 3.53058 3.65909 3.94895 4.10471 4.28456 4.49224 4.59919 4.89937 4.94836 5.03448 5.08469 5.12585 5.26185 5.47828 5.58024 5.66140 5.71024 5.84726 6.24688 6.43544 6.66375 7.24048 7.30334 7.71115 8.83987 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.078120 B = 0.005348 C = 0.005219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 358.337404 B = 5234.270442 C = 5363.566931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.987 3.013 4 H -0.262 1.262 5 H -0.285 1.285 6 H -0.262 1.262 7 C -0.556 4.556 8 H 0.084 0.916 9 C 0.285 3.715 10 N -0.723 5.723 11 C 0.689 3.311 12 O -0.648 6.648 13 N -0.724 5.724 14 C 0.129 3.871 15 H 0.067 0.933 16 C -0.150 4.150 17 C 0.046 3.954 18 N -0.677 5.677 19 C 0.035 3.965 20 H 0.269 0.731 21 H -0.015 1.015 22 H -0.015 1.015 23 H 0.405 0.595 24 H 0.410 0.590 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.105 0.895 28 H 0.081 0.919 29 H 0.347 0.653 30 H 0.065 0.935 31 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.220 -14.689 -0.033 19.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.810 3.190 4 H -0.186 1.186 5 H -0.211 1.211 6 H -0.186 1.186 7 C -0.594 4.594 8 H 0.102 0.898 9 C 0.162 3.838 10 N -0.376 5.376 11 C 0.389 3.611 12 O -0.531 6.531 13 N -0.382 5.382 14 C 0.022 3.978 15 H 0.085 0.915 16 C -0.190 4.190 17 C -0.083 4.083 18 N -0.305 5.305 19 C -0.096 4.096 20 H 0.078 0.922 21 H 0.003 0.997 22 H 0.003 0.997 23 H 0.240 0.760 24 H 0.246 0.754 25 H 0.109 0.891 26 H 0.111 0.889 27 H 0.124 0.876 28 H 0.099 0.901 29 H 0.163 0.837 30 H 0.084 0.916 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 10.469 -15.264 0.198 18.510 hybrid contribution 0.956 1.846 -0.401 2.117 sum 11.425 -13.418 -0.203 17.624 Atomic orbital electron populations 1.70137 1.08324 1.28668 1.49854 1.26075 0.95769 1.03905 0.93806 0.85177 0.77868 0.76483 0.79478 1.18646 1.21084 1.18648 1.21568 0.94301 0.90452 1.53091 0.89804 1.18406 0.88129 0.83404 0.93900 1.45300 1.10872 1.03821 1.77643 1.16378 0.85222 0.81672 0.77830 1.90842 1.16788 1.84921 1.60524 1.45043 1.08815 1.04126 1.80177 1.22177 0.98568 0.79787 0.97283 0.91520 1.23345 0.98167 0.95782 1.01666 1.23185 1.03005 0.95655 0.86457 1.62710 1.18748 1.27816 1.21200 1.23050 0.98343 0.92831 0.95385 0.92216 0.99746 0.99723 0.76014 0.75357 0.89076 0.88918 0.87630 0.90056 0.83704 0.91620 0.92310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.70 13.29 21.45 0.28 -56.42 16 2 C 0.00 0.23 5.46 84.66 0.46 0.69 16 3 Si 0.99 42.33 29.54 68.60 2.03 44.36 16 4 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 5 H -0.29 -12.16 7.11 99.48 0.71 -11.45 16 6 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 7 C -0.56 -30.52 9.28 25.60 0.24 -30.29 16 8 H 0.08 4.12 7.60 -2.91 -0.02 4.10 16 9 C 0.28 16.03 5.43 85.63 0.46 16.50 16 10 N -0.72 -31.47 5.55 -482.29 -2.68 -34.15 16 11 C 0.69 29.10 8.56 179.05 1.53 30.63 16 12 O -0.65 -34.16 16.04 -3.99 -0.06 -34.22 16 13 N -0.72 -20.78 5.03 -453.63 -2.28 -23.07 16 14 C 0.13 3.30 3.29 45.87 0.15 3.45 16 15 H 0.07 2.10 7.64 -2.39 -0.02 2.09 16 16 C -0.15 -2.33 6.77 31.80 0.22 -2.11 16 17 C 0.05 0.65 7.55 86.65 0.65 1.31 16 18 N -0.68 -12.81 7.51 -502.18 -3.77 -16.58 16 19 C 0.04 0.91 7.31 86.45 0.63 1.54 16 20 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 21 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 22 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 23 H 0.40 14.36 8.33 -92.71 -0.77 13.59 16 24 H 0.41 8.65 8.37 -92.71 -0.78 7.88 16 25 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 26 H 0.09 1.12 7.74 -2.39 -0.02 1.10 16 27 H 0.11 0.96 8.14 -2.38 -0.02 0.94 16 28 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.35 5.37 8.92 -89.69 -0.80 4.57 16 30 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.06 1.66 7.92 -2.39 -0.02 1.64 16 Total: -1.00 -73.50 265.61 -3.33 -76.83 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: -1.19 Total: 21.54 kcal Atomic # 6 Polarization: 17.36 SS G_CDS: 4.35 Total: 21.71 kcal Atomic # 7 Polarization: -121.77 SS G_CDS: -8.45 Total: -130.22 kcal Atomic # 8 Polarization: -34.16 SS G_CDS: -0.06 Total: -34.22 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -73.50 -3.33 -76.83 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260807179.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.799 kcal (2) G-P(sol) polarization free energy of solvation -73.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds