Wall clock time and date at job start Sun Mar 29 2020 21:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09002 * 109.52176 * 2 1 4 4 C 1.53035 * 109.49743 * 239.91600 * 2 1 3 5 5 C 1.53041 * 109.53976 * 178.68324 * 4 2 1 6 6 C 1.53194 * 109.31106 * 61.36233 * 5 4 2 7 7 N 1.46919 * 108.77948 * 305.36983 * 6 5 4 8 8 C 1.36933 * 120.63382 * 233.62883 * 7 6 5 9 9 H 1.07994 * 120.00783 * 216.21883 * 8 7 6 10 10 C 1.38819 * 119.99600 * 36.21805 * 8 7 6 11 11 N 1.31620 * 120.00208 * 13.59997 * 10 8 7 12 12 Si 1.86801 * 120.00142 * 193.59716 * 10 8 7 13 13 H 1.48503 * 109.46878 * 59.99583 * 12 10 8 14 14 H 1.48493 * 109.47463 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.47061 * 300.00587 * 12 10 8 16 16 C 1.46926 * 118.74039 * 53.60299 * 7 6 5 17 17 H 1.09000 * 109.58537 * 66.32424 * 16 7 6 18 18 C 1.50701 * 109.59115 * 186.60598 * 16 7 6 19 19 O 1.20829 * 119.99506 * 36.74153 * 18 16 7 20 20 O 1.34228 * 120.00468 * 216.74159 * 18 16 7 21 21 H 1.09001 * 109.46801 * 299.92328 * 1 2 3 22 22 H 1.08996 * 109.46682 * 59.92142 * 1 2 3 23 23 H 1.08999 * 109.47068 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.46258 * 58.65937 * 4 2 1 25 25 H 1.09004 * 109.45118 * 298.70014 * 4 2 1 26 26 H 1.09003 * 109.49747 * 301.41609 * 5 4 2 27 27 H 1.08999 * 109.52744 * 181.32800 * 5 4 2 28 28 H 1.09000 * 109.58627 * 185.57937 * 6 5 4 29 29 H 1.09009 * 109.70087 * 65.22494 * 6 5 4 30 30 H 0.96994 * 120.00458 * 179.97438 * 11 10 8 31 31 H 0.96700 * 117.00267 * 180.02562 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0409 -0.7231 -1.2483 5 6 3.5709 -0.6951 -1.2660 6 6 4.1053 -1.4267 -0.0306 7 7 3.5047 -0.8291 1.1696 8 6 4.2936 -0.3784 2.1941 9 1 3.9661 -0.4898 3.2172 10 6 5.5144 0.2216 1.9177 11 7 5.7983 0.6007 0.6896 12 14 6.7544 0.4912 3.2885 13 1 7.1247 -0.8172 3.8854 14 1 7.9680 1.1454 2.7368 15 1 6.1559 1.3602 4.3335 16 6 2.0414 -0.7237 1.2496 17 1 1.6054 -1.7214 1.3007 18 6 1.6576 0.0587 2.4791 19 8 2.3343 0.9941 2.8355 20 8 0.5640 -0.2835 3.1783 21 1 -0.3633 0.5127 0.8907 22 1 -0.3632 0.5150 -0.8893 23 1 -0.3633 -1.0277 -0.0005 24 1 1.6582 -0.2246 -2.1389 25 1 1.6967 -1.7573 -1.2350 26 1 3.9160 0.3388 -1.2541 27 1 3.9340 -1.1895 -2.1670 28 1 5.1896 -1.3246 0.0139 29 1 3.8396 -2.4825 -0.0852 30 1 6.6512 1.0204 0.4965 31 1 0.3581 0.2481 3.9593 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300228227.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:53 Heat of formation + Delta-G solvation = -99.023259 kcal Electronic energy + Delta-G solvation = -15375.280435 eV Core-core repulsion = 12849.121782 eV Total energy + Delta-G solvation = -2526.158653 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.36127 -38.95899 -36.84775 -35.38898 -32.85552 -32.53053 -28.08862 -27.08737 -25.05545 -22.85114 -22.07351 -20.52212 -18.97063 -18.65537 -17.36140 -16.84808 -16.30550 -15.62293 -15.26600 -15.05024 -14.49481 -14.26520 -13.70708 -13.49618 -13.27873 -13.00269 -12.93952 -12.64731 -12.27525 -12.15242 -12.09628 -11.78681 -11.68764 -11.40674 -11.14785 -10.94192 -10.36923 -8.51299 -7.84730 -5.38841 1.40600 1.42874 1.46178 1.50959 2.27867 2.50775 3.31256 3.62258 3.96845 4.05366 4.27603 4.45567 4.55064 4.68504 4.76776 4.83326 4.98955 5.05336 5.06090 5.24080 5.28769 5.42045 5.46086 5.62426 5.68972 5.80060 5.91278 6.43492 7.16734 7.26808 7.76285 8.30786 9.18303 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.030531 B = 0.014597 C = 0.010775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.886672 B = 1917.692500 C = 2598.069507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.095 4.095 3 H 0.034 0.966 4 C -0.095 4.095 5 C -0.124 4.124 6 C 0.167 3.833 7 N -0.597 5.597 8 C -0.241 4.241 9 H 0.044 0.956 10 C -0.036 4.036 11 N -0.916 5.916 12 Si 0.955 3.045 13 H -0.274 1.274 14 H -0.288 1.288 15 H -0.290 1.290 16 C 0.177 3.823 17 H 0.079 0.921 18 C 0.474 3.526 19 O -0.522 6.522 20 O -0.514 6.514 21 H 0.046 0.954 22 H 0.071 0.929 23 H 0.076 0.924 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.035 0.965 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.025 0.975 30 H 0.249 0.751 31 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.270 -3.997 -2.047 11.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.116 4.116 3 H 0.053 0.947 4 C -0.132 4.132 5 C -0.162 4.162 6 C 0.042 3.958 7 N -0.323 5.323 8 C -0.372 4.372 9 H 0.062 0.938 10 C -0.233 4.233 11 N -0.561 5.561 12 Si 0.784 3.216 13 H -0.199 1.199 14 H -0.213 1.213 15 H -0.217 1.217 16 C 0.070 3.930 17 H 0.096 0.904 18 C 0.316 3.684 19 O -0.409 6.409 20 O -0.327 6.327 21 H 0.065 0.935 22 H 0.090 0.910 23 H 0.095 0.905 24 H 0.093 0.907 25 H 0.096 0.904 26 H 0.054 0.946 27 H 0.086 0.914 28 H 0.078 0.922 29 H 0.043 0.957 30 H 0.058 0.942 31 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -9.841 -3.897 -2.335 10.839 hybrid contribution 0.964 1.088 1.377 2.002 sum -8.878 -2.810 -0.958 9.361 Atomic orbital electron populations 1.21808 0.92473 1.03223 1.01957 1.21500 0.96843 0.98285 0.94966 0.94713 1.21441 0.94917 1.00769 0.96060 1.21799 0.95942 1.00528 0.97976 1.20838 0.98412 0.92191 0.84319 1.44309 0.98772 1.69942 1.19292 1.18940 0.99652 1.31742 0.86840 0.93785 1.25782 1.01953 0.97377 0.98148 1.70083 1.23040 1.43277 1.19673 0.85548 0.78661 0.77923 0.79464 1.19927 1.21347 1.21669 1.20595 0.87171 0.96604 0.88633 0.90384 1.23779 0.77113 0.82801 0.84720 1.90726 1.51214 1.30089 1.68876 1.84519 1.44094 1.61101 1.42996 0.93491 0.90988 0.90489 0.90677 0.90399 0.94581 0.91416 0.92238 0.95679 0.94232 0.72291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.68 9.02 71.99 0.65 -3.03 16 2 C -0.10 -3.48 2.33 -10.71 -0.02 -3.50 16 3 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 4 C -0.09 -3.08 5.17 30.62 0.16 -2.92 16 5 C -0.12 -5.00 6.08 30.67 0.19 -4.81 16 6 C 0.17 7.77 5.64 86.36 0.49 8.26 16 7 N -0.60 -30.30 2.95 -679.38 -2.00 -32.30 16 8 C -0.24 -13.87 7.22 84.04 0.61 -13.27 16 9 H 0.04 2.63 6.75 -2.91 -0.02 2.61 16 10 C -0.04 -2.08 4.99 84.86 0.42 -1.66 16 11 N -0.92 -54.56 11.19 21.65 0.24 -54.31 16 12 Si 0.96 47.51 29.58 68.60 2.03 49.54 16 13 H -0.27 -12.99 7.11 99.48 0.71 -12.28 16 14 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 15 H -0.29 -14.67 7.11 99.48 0.71 -13.96 16 16 C 0.18 7.39 2.84 44.23 0.13 7.51 16 17 H 0.08 2.93 8.14 -2.39 -0.02 2.91 16 18 C 0.47 20.12 5.74 71.24 0.41 20.53 16 19 O -0.52 -27.15 15.04 21.95 0.33 -26.82 16 20 O -0.51 -16.05 13.09 -51.40 -0.67 -16.72 16 21 H 0.05 1.29 7.13 -2.39 -0.02 1.27 16 22 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 23 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 24 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 25 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16 26 H 0.04 1.74 8.01 -2.39 -0.02 1.72 16 27 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 28 H 0.06 3.19 5.90 -2.39 -0.01 3.18 16 29 H 0.03 1.06 8.14 -2.38 -0.02 1.04 16 30 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 31 H 0.42 9.21 9.10 -74.06 -0.67 8.53 16 Total: -1.00 -70.07 252.54 3.40 -66.67 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: 0.45 Total: 6.85 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: 3.02 Total: 7.10 kcal Atomic # 7 Polarization: -84.86 SS G_CDS: -1.76 Total: -86.61 kcal Atomic # 8 Polarization: -43.20 SS G_CDS: -0.34 Total: -43.54 kcal Atomic # 14 Polarization: 47.51 SS G_CDS: 2.03 Total: 49.54 kcal Total: -70.07 3.40 -66.67 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300228227.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.351 kcal (2) G-P(sol) polarization free energy of solvation -70.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds