Wall clock time and date at job start Sun Mar 29 2020 22:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 110.35519 * 2 1 4 4 C 1.54957 * 110.30740 * 237.85995 * 2 1 3 5 5 C 1.55453 * 100.98616 * 204.68824 * 4 2 1 6 6 H 1.09001 * 110.92280 * 152.22235 * 5 4 2 7 7 N 1.46499 * 110.83516 * 275.89454 * 5 4 2 8 8 C 1.36938 * 119.99591 * 268.32460 * 7 5 4 9 9 H 1.07997 * 120.00406 * 0.02562 * 8 7 5 10 10 C 1.38817 * 119.99827 * 179.97438 * 8 7 5 11 11 N 1.31611 * 119.99971 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 119.99935 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47097 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.47200 * 120.00090 * 12 10 8 15 15 H 1.48497 * 109.46994 * 240.00261 * 12 10 8 16 16 C 1.54382 * 102.18572 * 34.04135 * 5 4 2 17 17 C 1.52997 * 109.83003 * 219.17756 * 16 5 4 18 18 C 1.53007 * 109.83164 * 98.29666 * 16 5 4 19 19 O 1.43237 * 107.66893 * 338.73880 * 16 5 4 20 20 H 1.08995 * 109.47273 * 299.30490 * 1 2 3 21 21 H 1.09000 * 109.47075 * 59.30778 * 1 2 3 22 22 H 1.09008 * 109.46988 * 179.30334 * 1 2 3 23 23 H 1.08998 * 109.47642 * 175.48457 * 3 2 1 24 24 H 1.08995 * 109.47438 * 295.48637 * 3 2 1 25 25 H 1.09009 * 109.46606 * 55.48534 * 3 2 1 26 26 H 1.08997 * 111.12579 * 322.55659 * 4 2 1 27 27 H 1.09001 * 111.12602 * 86.67930 * 4 2 1 28 28 H 0.96994 * 120.00371 * 88.33592 * 7 5 4 29 29 H 0.96997 * 120.00568 * 179.97438 * 11 10 8 30 30 H 1.08994 * 109.47751 * 299.81392 * 17 16 5 31 31 H 1.09002 * 109.46873 * 59.81602 * 17 16 5 32 32 H 1.09005 * 109.47287 * 179.81085 * 17 16 5 33 33 H 1.08994 * 109.46875 * 180.18519 * 18 16 5 34 34 H 1.08996 * 109.46854 * 300.18567 * 18 16 5 35 35 H 1.09005 * 109.46760 * 60.18866 * 18 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0622 1.4344 0.0000 4 6 2.0678 -0.7731 -1.2305 5 6 3.4710 -1.2046 -0.7192 6 1 3.7971 -2.1236 -1.2063 7 7 4.4498 -0.1325 -0.9163 8 6 5.1898 -0.0842 -2.0675 9 1 5.0516 -0.8361 -2.8303 10 6 6.1168 0.9319 -2.2545 11 7 6.2849 1.8486 -1.3251 12 14 7.1258 0.9983 -3.8251 13 1 6.7496 -0.1384 -4.7035 14 1 6.8597 2.2776 -4.5307 15 1 8.5697 0.9088 -3.4900 16 6 3.2113 -1.4420 0.7840 17 6 4.3991 -0.9326 1.6027 18 6 3.0031 -2.9352 1.0453 19 8 2.0286 -0.7169 1.1406 20 1 -0.3633 0.5030 0.8961 21 1 -0.3633 0.5245 -0.8837 22 1 -0.3633 -1.0277 -0.0125 23 1 3.1491 1.4188 0.0809 24 1 1.7740 1.9289 -0.9276 25 1 1.6426 1.9776 0.8469 26 1 1.4471 -1.6416 -1.4509 27 1 2.1489 -0.1205 -2.0998 28 1 4.5738 0.5429 -0.2313 29 1 6.9329 2.5584 -1.4555 30 1 5.3009 -1.4686 1.3069 31 1 4.5344 0.1337 1.4218 32 1 4.2083 -1.1000 2.6628 33 1 2.8171 -3.0956 2.1072 34 1 2.1483 -3.2891 0.4691 35 1 3.8959 -3.4843 0.7458 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306214650.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:11 Heat of formation + Delta-G solvation = -39.929326 kcal Electronic energy + Delta-G solvation = -15595.012018 eV Core-core repulsion = 13207.248965 eV Total energy + Delta-G solvation = -2387.763053 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.78430 -34.51655 -33.61029 -31.74767 -29.90611 -28.15059 -26.99691 -26.34558 -23.85943 -21.79523 -19.98643 -18.91446 -17.23645 -15.61825 -15.00778 -14.31314 -14.24314 -13.56322 -13.41300 -12.96616 -12.84441 -12.33164 -12.03964 -11.86221 -11.69157 -11.38810 -11.32529 -11.20132 -10.95512 -10.89618 -10.78889 -10.33416 -10.17908 -10.09901 -9.67191 -9.59615 -8.93548 -8.89047 -6.98036 -5.81048 -3.09518 3.40561 3.46716 3.48666 4.25169 4.55346 5.19825 5.32284 5.45078 5.51173 5.56599 5.57520 5.66446 5.87343 5.90511 6.01904 6.06555 6.18703 6.20964 6.27847 6.32966 6.40929 6.43331 6.52795 6.61636 6.68888 6.74832 6.93368 7.03350 7.08710 7.68097 7.79918 8.38333 9.49347 10.05400 10.40432 11.41444 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.036185 B = 0.010209 C = 0.009390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.612471 B = 2741.952465 C = 2981.296538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.106 3.894 3 C -0.160 4.160 4 C -0.172 4.172 5 C 0.157 3.843 6 H 0.066 0.934 7 N -0.712 5.712 8 C -0.242 4.242 9 H 0.071 0.929 10 C -0.011 4.011 11 N -0.931 5.931 12 Si 0.906 3.094 13 H -0.281 1.281 14 H -0.292 1.292 15 H -0.292 1.292 16 C 0.090 3.910 17 C -0.141 4.141 18 C -0.145 4.145 19 O -0.373 6.373 20 H 0.055 0.945 21 H 0.063 0.937 22 H 0.055 0.945 23 H 0.082 0.918 24 H 0.057 0.943 25 H 0.045 0.955 26 H 0.059 0.941 27 H 0.082 0.918 28 H 0.389 0.611 29 H 0.255 0.745 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.045 0.955 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.331 -5.468 3.142 10.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.067 3.933 3 C -0.217 4.217 4 C -0.213 4.213 5 C 0.046 3.954 6 H 0.084 0.916 7 N -0.356 5.356 8 C -0.373 4.373 9 H 0.089 0.911 10 C -0.207 4.207 11 N -0.579 5.579 12 Si 0.737 3.263 13 H -0.206 1.206 14 H -0.219 1.219 15 H -0.219 1.219 16 C 0.050 3.950 17 C -0.199 4.199 18 C -0.203 4.203 19 O -0.294 6.294 20 H 0.074 0.926 21 H 0.082 0.918 22 H 0.074 0.926 23 H 0.101 0.899 24 H 0.076 0.924 25 H 0.064 0.936 26 H 0.078 0.922 27 H 0.101 0.899 28 H 0.228 0.772 29 H 0.065 0.935 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.301 -5.470 3.183 10.438 hybrid contribution 0.678 0.399 -0.888 1.186 sum -7.623 -5.071 2.295 9.439 Atomic orbital electron populations 1.21833 0.94382 1.01721 1.01634 1.22176 0.92959 0.92423 0.85734 1.22259 1.03923 0.94838 1.00693 1.23987 0.99321 0.99701 0.98264 1.21674 0.89236 0.93147 0.91380 0.91586 1.42734 1.42498 1.29099 1.21239 1.19311 1.13963 1.08535 0.95495 0.91100 1.24726 1.00022 0.97746 0.98196 1.69656 1.38328 1.16123 1.33782 0.86133 0.80011 0.77262 0.82859 1.20577 1.21910 1.21886 1.22392 0.85576 0.91164 0.95905 1.21931 0.97023 1.02757 0.98168 1.21994 1.01630 0.95074 1.01556 1.88354 1.42320 1.64097 1.34590 0.92605 0.91825 0.92629 0.89923 0.92366 0.93588 0.92197 0.89921 0.77197 0.93478 0.91488 0.91457 0.93633 0.92630 0.92692 0.91781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 8.95 37.16 0.33 -1.68 16 2 C 0.11 1.88 1.21 -89.59 -0.11 1.77 16 3 C -0.16 -3.02 8.70 37.15 0.32 -2.70 16 4 C -0.17 -3.16 5.78 -24.40 -0.14 -3.30 16 5 C 0.16 3.19 3.05 -65.90 -0.20 2.99 16 6 H 0.07 1.33 7.78 -51.93 -0.40 0.93 16 7 N -0.71 -17.32 3.78 -51.47 -0.19 -17.52 16 8 C -0.24 -6.53 9.96 -15.06 -0.15 -6.68 16 9 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 10 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 11 N -0.93 -27.44 13.06 55.49 0.72 -26.72 16 12 Si 0.91 22.06 29.55 -169.99 -5.02 17.04 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 14 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 15 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 16 C 0.09 1.65 1.23 -89.89 -0.11 1.54 16 17 C -0.14 -2.66 8.12 37.16 0.30 -2.36 16 18 C -0.14 -2.21 8.73 37.16 0.32 -1.88 16 19 O -0.37 -7.05 10.05 -35.23 -0.35 -7.40 16 20 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 21 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 22 H 0.05 0.76 8.14 -51.92 -0.42 0.33 16 23 H 0.08 1.83 4.98 -51.93 -0.26 1.57 16 24 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 25 H 0.05 0.80 8.14 -51.92 -0.42 0.37 16 26 H 0.06 0.98 8.06 -51.93 -0.42 0.56 16 27 H 0.08 1.64 8.03 -51.93 -0.42 1.22 16 28 H 0.39 10.02 3.61 -40.82 -0.15 9.87 16 29 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 30 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 31 H 0.07 1.43 6.04 -51.93 -0.31 1.11 16 32 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 LS Contribution 275.03 15.07 4.14 4.14 Total: -1.00 -28.74 275.03 -5.96 -34.70 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -5.73 Total: 8.46 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: 0.47 Total: -12.71 kcal Atomic # 7 Polarization: -44.76 SS G_CDS: 0.53 Total: -44.23 kcal Atomic # 8 Polarization: -7.05 SS G_CDS: -0.35 Total: -7.40 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -28.74 -5.96 -34.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306214650.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.230 kcal (2) G-P(sol) polarization free energy of solvation -28.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds