Wall clock time and date at job start Sun Mar 29 2020 22:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 110.35519 * 2 1 4 4 C 1.54957 * 110.30740 * 237.85995 * 2 1 3 5 5 C 1.55453 * 100.98616 * 204.68824 * 4 2 1 6 6 H 1.09001 * 110.92280 * 152.22235 * 5 4 2 7 7 N 1.46499 * 110.83516 * 275.89454 * 5 4 2 8 8 C 1.36938 * 119.99591 * 268.32460 * 7 5 4 9 9 H 1.07997 * 120.00406 * 0.02562 * 8 7 5 10 10 C 1.38817 * 119.99827 * 179.97438 * 8 7 5 11 11 N 1.31611 * 119.99971 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 119.99935 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47097 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.47200 * 120.00090 * 12 10 8 15 15 H 1.48497 * 109.46994 * 240.00261 * 12 10 8 16 16 C 1.54382 * 102.18572 * 34.04135 * 5 4 2 17 17 C 1.52997 * 109.83003 * 219.17756 * 16 5 4 18 18 C 1.53007 * 109.83164 * 98.29666 * 16 5 4 19 19 O 1.43237 * 107.66893 * 338.73880 * 16 5 4 20 20 H 1.08995 * 109.47273 * 299.30490 * 1 2 3 21 21 H 1.09000 * 109.47075 * 59.30778 * 1 2 3 22 22 H 1.09008 * 109.46988 * 179.30334 * 1 2 3 23 23 H 1.08998 * 109.47642 * 175.48457 * 3 2 1 24 24 H 1.08995 * 109.47438 * 295.48637 * 3 2 1 25 25 H 1.09009 * 109.46606 * 55.48534 * 3 2 1 26 26 H 1.08997 * 111.12579 * 322.55659 * 4 2 1 27 27 H 1.09001 * 111.12602 * 86.67930 * 4 2 1 28 28 H 0.96994 * 120.00371 * 88.33592 * 7 5 4 29 29 H 0.96997 * 120.00568 * 179.97438 * 11 10 8 30 30 H 1.08994 * 109.47751 * 299.81392 * 17 16 5 31 31 H 1.09002 * 109.46873 * 59.81602 * 17 16 5 32 32 H 1.09005 * 109.47287 * 179.81085 * 17 16 5 33 33 H 1.08994 * 109.46875 * 180.18519 * 18 16 5 34 34 H 1.08996 * 109.46854 * 300.18567 * 18 16 5 35 35 H 1.09005 * 109.46760 * 60.18866 * 18 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0622 1.4344 0.0000 4 6 2.0678 -0.7731 -1.2305 5 6 3.4710 -1.2046 -0.7192 6 1 3.7971 -2.1236 -1.2063 7 7 4.4498 -0.1325 -0.9163 8 6 5.1898 -0.0842 -2.0675 9 1 5.0516 -0.8361 -2.8303 10 6 6.1168 0.9319 -2.2545 11 7 6.2849 1.8486 -1.3251 12 14 7.1258 0.9983 -3.8251 13 1 6.7496 -0.1384 -4.7035 14 1 6.8597 2.2776 -4.5307 15 1 8.5697 0.9088 -3.4900 16 6 3.2113 -1.4420 0.7840 17 6 4.3991 -0.9326 1.6027 18 6 3.0031 -2.9352 1.0453 19 8 2.0286 -0.7169 1.1406 20 1 -0.3633 0.5030 0.8961 21 1 -0.3633 0.5245 -0.8837 22 1 -0.3633 -1.0277 -0.0125 23 1 3.1491 1.4188 0.0809 24 1 1.7740 1.9289 -0.9276 25 1 1.6426 1.9776 0.8469 26 1 1.4471 -1.6416 -1.4509 27 1 2.1489 -0.1205 -2.0998 28 1 4.5738 0.5429 -0.2313 29 1 6.9329 2.5584 -1.4555 30 1 5.3009 -1.4686 1.3069 31 1 4.5344 0.1337 1.4218 32 1 4.2083 -1.1000 2.6628 33 1 2.8171 -3.0956 2.1072 34 1 2.1483 -3.2891 0.4691 35 1 3.8959 -3.4843 0.7458 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306214650.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:10 Heat of formation + Delta-G solvation = -57.272427 kcal Electronic energy + Delta-G solvation = -15595.764072 eV Core-core repulsion = 13207.248965 eV Total energy + Delta-G solvation = -2388.515106 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.27297 -36.28117 -35.09577 -33.54420 -31.55391 -29.74321 -28.41721 -27.74705 -25.76962 -23.38331 -21.45907 -20.46052 -19.17675 -17.27755 -16.57393 -16.14450 -15.73346 -15.23029 -14.95604 -14.47041 -14.33533 -13.82666 -13.41783 -13.38334 -13.07018 -12.97636 -12.81955 -12.72004 -12.65624 -12.55861 -12.42107 -12.02054 -11.93000 -11.71441 -11.41244 -11.20231 -10.84568 -10.38326 -8.96723 -7.93415 -5.20892 1.47190 1.47676 1.57306 2.55798 2.84014 3.37455 3.81166 3.86371 3.97496 4.09163 4.16484 4.25931 4.36406 4.51520 4.66041 4.78602 4.81763 4.83040 4.92081 4.94751 5.04275 5.05180 5.08729 5.18225 5.28685 5.33140 5.43287 5.48063 5.53580 5.56783 6.28302 6.35843 7.35793 8.10445 8.34795 9.30000 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.036185 B = 0.010209 C = 0.009390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.612471 B = 2741.952465 C = 2981.296538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.104 3.896 3 C -0.157 4.157 4 C -0.164 4.164 5 C 0.145 3.855 6 H 0.068 0.932 7 N -0.722 5.722 8 C -0.237 4.237 9 H 0.076 0.924 10 C -0.072 4.072 11 N -0.968 5.968 12 Si 0.969 3.031 13 H -0.266 1.266 14 H -0.297 1.297 15 H -0.296 1.296 16 C 0.091 3.909 17 C -0.136 4.136 18 C -0.139 4.139 19 O -0.380 6.380 20 H 0.062 0.938 21 H 0.077 0.923 22 H 0.069 0.931 23 H 0.046 0.954 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.088 0.912 27 H 0.063 0.937 28 H 0.380 0.620 29 H 0.250 0.750 30 H 0.059 0.941 31 H 0.035 0.965 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.805 -7.007 2.920 12.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.065 3.935 3 C -0.215 4.215 4 C -0.204 4.204 5 C 0.035 3.965 6 H 0.086 0.914 7 N -0.365 5.365 8 C -0.369 4.369 9 H 0.094 0.906 10 C -0.264 4.264 11 N -0.618 5.618 12 Si 0.799 3.201 13 H -0.190 1.190 14 H -0.224 1.224 15 H -0.223 1.223 16 C 0.051 3.949 17 C -0.194 4.194 18 C -0.196 4.196 19 O -0.300 6.300 20 H 0.081 0.919 21 H 0.096 0.904 22 H 0.088 0.912 23 H 0.065 0.935 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.106 0.894 27 H 0.082 0.918 28 H 0.218 0.782 29 H 0.058 0.942 30 H 0.078 0.922 31 H 0.054 0.946 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.811 -7.054 2.955 12.440 hybrid contribution 1.095 0.853 -0.780 1.592 sum -8.716 -6.201 2.175 10.916 Atomic orbital electron populations 1.21798 0.91328 1.03064 1.02725 1.22292 0.95128 0.91054 0.85042 1.22222 1.01566 0.96548 1.01182 1.23884 0.98356 1.00424 0.97778 1.21940 0.89317 0.91961 0.93290 0.91362 1.42870 1.43292 1.30008 1.20289 1.19671 1.13281 1.07853 0.96118 0.90607 1.25469 1.01808 0.98012 1.01145 1.69816 1.39340 1.16966 1.35710 0.85137 0.78089 0.77233 0.79675 1.19037 1.22419 1.22342 1.22416 0.85221 0.93197 0.94060 1.21869 0.97370 1.00547 0.99628 1.21947 1.02631 0.92269 1.02770 1.88347 1.42202 1.64291 1.35199 0.91894 0.90444 0.91151 0.93546 0.92414 0.92395 0.89376 0.91796 0.78247 0.94156 0.92239 0.94618 0.91677 0.91287 0.91342 0.91009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.41 8.95 71.98 0.64 -2.76 16 2 C 0.10 3.49 1.21 -10.13 -0.01 3.48 16 3 C -0.16 -5.95 8.70 71.98 0.63 -5.32 16 4 C -0.16 -5.74 5.78 32.11 0.19 -5.55 16 5 C 0.14 5.73 3.05 46.31 0.14 5.87 16 6 H 0.07 2.65 7.78 -2.39 -0.02 2.63 16 7 N -0.72 -35.58 3.78 -316.74 -1.20 -36.78 16 8 C -0.24 -12.88 9.96 84.03 0.84 -12.05 16 9 H 0.08 3.95 7.83 -2.91 -0.02 3.93 16 10 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 11 N -0.97 -58.70 13.06 21.65 0.28 -58.42 16 12 Si 0.97 45.86 29.55 68.60 2.03 47.88 16 13 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 14 H -0.30 -14.15 7.11 99.48 0.71 -13.45 16 15 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 16 C 0.09 3.20 1.23 -10.32 -0.01 3.18 16 17 C -0.14 -5.13 8.12 71.98 0.58 -4.54 16 18 C -0.14 -3.80 8.73 71.98 0.63 -3.17 16 19 O -0.38 -13.58 10.05 -148.98 -1.50 -15.08 16 20 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 21 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 22 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 23 H 0.05 2.11 4.98 -2.39 -0.01 2.10 16 24 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 25 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 26 H 0.09 2.58 8.06 -2.39 -0.02 2.56 16 27 H 0.06 2.48 8.03 -2.39 -0.02 2.46 16 28 H 0.38 20.26 3.61 -92.71 -0.33 19.92 16 29 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 30 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.03 1.55 6.04 -2.39 -0.01 1.54 16 32 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 33 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 Total: -1.00 -61.55 275.03 4.42 -57.12 By element: Atomic # 1 Polarization: 29.03 SS G_CDS: 0.72 Total: 29.74 kcal Atomic # 6 Polarization: -28.56 SS G_CDS: 4.09 Total: -24.48 kcal Atomic # 7 Polarization: -94.28 SS G_CDS: -0.91 Total: -95.20 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: -1.50 Total: -15.08 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.88 kcal Total: -61.55 4.42 -57.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306214650.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.148 kcal (2) G-P(sol) polarization free energy of solvation -61.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds