Wall clock time and date at job start Sun Mar 29 2020 22:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.55635 * 2 1 4 4 C 1.53298 * 109.51412 * 239.86870 * 2 1 3 5 5 N 1.47146 * 108.38497 * 292.38133 * 4 2 1 6 6 C 1.36932 * 120.98224 * 129.49037 * 5 4 2 7 7 H 1.08004 * 120.00246 * 222.34989 * 6 5 4 8 8 C 1.38816 * 120.00209 * 42.34275 * 6 5 4 9 9 N 1.31625 * 120.00112 * 214.80943 * 8 6 5 10 10 Si 1.86797 * 119.99922 * 34.80469 * 8 6 5 11 11 H 1.48501 * 109.46998 * 84.59187 * 10 8 6 12 12 H 1.48496 * 109.47137 * 204.59002 * 10 8 6 13 13 H 1.48498 * 109.47157 * 324.58999 * 10 8 6 14 14 C 1.47156 * 118.03716 * 309.46094 * 5 4 2 15 15 C 1.52996 * 109.68218 * 290.81395 * 14 5 4 16 16 C 1.53002 * 109.67979 * 170.26245 * 14 5 4 17 17 C 1.53299 * 108.38076 * 50.53928 * 14 5 4 18 18 O 1.42961 * 109.22166 * 307.69358 * 17 14 5 19 19 H 1.08993 * 109.47479 * 299.87842 * 1 2 3 20 20 H 1.09004 * 109.46725 * 59.87591 * 1 2 3 21 21 H 1.08999 * 109.47260 * 179.87268 * 1 2 3 22 22 H 1.08991 * 109.47452 * 180.12138 * 3 2 1 23 23 H 1.08994 * 109.46934 * 300.12626 * 3 2 1 24 24 H 1.09008 * 109.46835 * 60.12260 * 3 2 1 25 25 H 1.08993 * 109.67955 * 52.10827 * 4 2 1 26 26 H 1.09001 * 109.68027 * 172.61818 * 4 2 1 27 27 H 0.96995 * 119.99653 * 179.97438 * 9 8 6 28 28 H 1.09001 * 109.46978 * 178.92143 * 15 14 5 29 29 H 1.08994 * 109.47313 * 298.92621 * 15 14 5 30 30 H 1.09003 * 109.47181 * 58.93109 * 15 14 5 31 31 H 1.09001 * 109.46564 * 301.07189 * 16 14 5 32 32 H 1.08992 * 109.47170 * 61.07620 * 16 14 5 33 33 H 1.08996 * 109.46898 * 181.07885 * 16 14 5 34 34 H 1.09002 * 109.51190 * 67.62380 * 17 14 5 35 35 H 1.09004 * 109.51012 * 187.77095 * 17 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0421 1.4417 0.0000 4 6 2.0421 -0.7253 -1.2497 5 7 1.6959 -2.1508 -1.1335 6 6 1.0617 -2.8076 -2.1539 7 1 0.2557 -3.4929 -1.9366 8 6 1.4545 -2.5926 -3.4679 9 7 0.5593 -2.6049 -4.4328 10 14 3.2534 -2.2857 -3.8666 11 1 3.9574 -3.5853 -4.0096 12 1 3.3558 -1.5248 -5.1377 13 1 3.8770 -1.5029 -2.7695 14 6 2.0521 -2.8498 0.1115 15 6 3.5723 -2.9950 0.2041 16 6 1.3995 -4.2335 0.1303 17 6 1.5395 -2.0210 1.2949 18 8 2.0075 -0.6763 1.1656 19 1 -0.3634 0.5119 0.8910 20 1 -0.3633 0.5158 -0.8889 21 1 -0.3634 -1.0276 -0.0023 22 1 3.1320 1.4402 -0.0022 23 1 1.6777 1.9567 -0.8888 24 1 1.6813 1.9555 0.8912 25 1 1.5706 -0.3042 -2.1376 26 1 3.1240 -0.6143 -1.3211 27 1 0.8338 -2.4542 -5.3508 28 1 3.8333 -3.4960 1.1363 29 1 3.9330 -3.5846 -0.6386 30 1 4.0337 -2.0077 0.1809 31 1 0.3175 -4.1259 0.0546 32 1 1.7663 -4.8197 -0.7122 33 1 1.6498 -4.7406 1.0621 34 1 0.4495 -2.0284 1.2995 35 1 1.9112 -2.4478 2.2265 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306225860.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:49 Heat of formation + Delta-G solvation = -26.853533 kcal Electronic energy + Delta-G solvation = -16009.672610 eV Core-core repulsion = 13622.476566 eV Total energy + Delta-G solvation = -2387.196044 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.36317 -35.34828 -33.60207 -31.94240 -29.90702 -27.23123 -26.89814 -25.43823 -24.89568 -22.85265 -20.03723 -18.00357 -16.56289 -15.72756 -15.24198 -14.76082 -14.12241 -14.03300 -13.59975 -13.15609 -12.49292 -12.17420 -11.94612 -11.77558 -11.56917 -11.55859 -11.30343 -11.24364 -11.06099 -10.81435 -10.64382 -10.43933 -10.34696 -9.95362 -9.57826 -9.42767 -8.92478 -8.26831 -6.63116 -6.10041 -3.40858 3.40016 3.50440 3.57116 4.35863 4.56908 4.85931 5.22794 5.44560 5.58178 5.66995 5.73722 5.81323 5.94522 6.04748 6.11793 6.17403 6.24379 6.28987 6.34170 6.44664 6.53078 6.60432 6.62636 6.68383 6.73072 6.81953 6.94366 7.06219 7.14166 7.92821 8.01940 8.42408 8.98654 9.70667 10.22522 11.05483 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.027625 B = 0.015608 C = 0.013314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.333985 B = 1793.466576 C = 2102.480455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.091 3.909 3 C -0.134 4.134 4 C 0.126 3.874 5 N -0.588 5.588 6 C -0.271 4.271 7 H 0.076 0.924 8 C 0.053 3.947 9 N -0.879 5.879 10 Si 0.840 3.160 11 H -0.288 1.288 12 H -0.298 1.298 13 H -0.259 1.259 14 C 0.151 3.849 15 C -0.151 4.151 16 C -0.127 4.127 17 C 0.058 3.942 18 O -0.382 6.382 19 H 0.044 0.956 20 H 0.060 0.940 21 H 0.071 0.929 22 H 0.056 0.944 23 H 0.067 0.933 24 H 0.055 0.945 25 H 0.071 0.929 26 H 0.030 0.970 27 H 0.263 0.737 28 H 0.041 0.959 29 H 0.049 0.951 30 H 0.050 0.950 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.040 0.960 34 H 0.050 0.950 35 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.225 3.291 9.098 9.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.050 3.950 3 C -0.192 4.192 4 C 0.000 4.000 5 N -0.312 5.312 6 C -0.399 4.399 7 H 0.094 0.906 8 C -0.150 4.150 9 N -0.518 5.518 10 Si 0.667 3.333 11 H -0.215 1.215 12 H -0.225 1.225 13 H -0.183 1.183 14 C 0.064 3.936 15 C -0.211 4.211 16 C -0.185 4.185 17 C -0.020 4.020 18 O -0.302 6.302 19 H 0.063 0.937 20 H 0.079 0.921 21 H 0.090 0.910 22 H 0.076 0.924 23 H 0.086 0.914 24 H 0.074 0.926 25 H 0.089 0.911 26 H 0.048 0.952 27 H 0.073 0.927 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.262 3.374 9.020 9.892 hybrid contribution 0.988 -0.065 -0.704 1.215 sum 3.250 3.308 8.316 9.522 Atomic orbital electron populations 1.22194 0.95748 1.03190 1.00737 1.22070 0.93516 0.91914 0.87483 1.21701 1.01367 0.94402 1.01694 1.21911 0.97477 0.85099 0.95515 1.44394 1.68690 1.03749 1.14377 1.18542 1.11378 1.26067 0.83892 0.90627 1.25628 0.96637 0.97080 0.95681 1.70074 1.32921 1.47923 1.00873 0.87410 0.90159 0.78224 0.77534 1.21507 1.22512 1.18330 1.20722 0.92605 0.92277 0.88043 1.22166 0.98102 1.00974 0.99825 1.21711 1.00786 0.95718 1.00260 1.22990 0.98283 0.82755 0.97937 1.87809 1.72840 1.25619 1.43918 0.93740 0.92093 0.91027 0.92442 0.91444 0.92577 0.91059 0.95186 0.92722 0.94011 0.93200 0.93136 0.92600 0.91561 0.94124 0.93189 0.90323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.91 8.09 37.16 0.30 -2.61 16 2 C 0.09 1.70 1.11 -90.47 -0.10 1.60 16 3 C -0.13 -2.10 8.85 37.16 0.33 -1.77 16 4 C 0.13 2.77 3.12 -3.54 -0.01 2.76 16 5 N -0.59 -13.66 1.70 -157.07 -0.27 -13.93 16 6 C -0.27 -7.24 8.46 -15.06 -0.13 -7.37 16 7 H 0.08 2.16 6.91 -52.48 -0.36 1.80 16 8 C 0.05 1.48 4.88 -17.43 -0.09 1.39 16 9 N -0.88 -26.01 13.97 55.49 0.78 -25.24 16 10 Si 0.84 21.41 27.55 -169.99 -4.68 16.72 16 11 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 12 H -0.30 -7.70 7.11 56.52 0.40 -7.30 16 13 H -0.26 -6.41 5.23 56.52 0.30 -6.11 16 14 C 0.15 3.02 1.04 -131.31 -0.14 2.88 16 15 C -0.15 -2.90 8.54 37.16 0.32 -2.58 16 16 C -0.13 -2.37 7.37 37.16 0.27 -2.09 16 17 C 0.06 1.05 5.27 37.31 0.20 1.25 16 18 O -0.38 -7.33 9.87 -35.23 -0.35 -7.68 16 19 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 20 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 21 H 0.07 1.43 6.11 -51.93 -0.32 1.11 16 22 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 23 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 24 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 25 H 0.07 1.67 7.33 -51.93 -0.38 1.29 16 26 H 0.03 0.69 6.07 -51.93 -0.32 0.38 16 27 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 28 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.05 1.01 7.20 -51.93 -0.37 0.63 16 31 H 0.05 1.07 7.52 -51.93 -0.39 0.68 16 32 H 0.07 1.34 7.69 -51.93 -0.40 0.94 16 33 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.05 0.90 6.25 -51.93 -0.32 0.58 16 35 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 265.96 15.07 4.01 4.01 Total: -1.00 -28.99 265.96 -5.47 -34.46 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: -5.91 Total: -1.80 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: 0.96 Total: -6.54 kcal Atomic # 7 Polarization: -39.68 SS G_CDS: 0.51 Total: -39.17 kcal Atomic # 8 Polarization: -7.33 SS G_CDS: -0.35 Total: -7.68 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.68 Total: 16.72 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -28.99 -5.47 -34.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306225860.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.607 kcal (2) G-P(sol) polarization free energy of solvation -28.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds