Wall clock time and date at job start Sun Mar 29 2020 22:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.55635 * 2 1 4 4 C 1.53298 * 109.51412 * 239.86870 * 2 1 3 5 5 N 1.47146 * 108.38497 * 292.38133 * 4 2 1 6 6 C 1.36932 * 120.98224 * 129.49037 * 5 4 2 7 7 H 1.08004 * 120.00246 * 222.34989 * 6 5 4 8 8 C 1.38816 * 120.00209 * 42.34275 * 6 5 4 9 9 N 1.31625 * 120.00112 * 214.80943 * 8 6 5 10 10 Si 1.86797 * 119.99922 * 34.80469 * 8 6 5 11 11 H 1.48501 * 109.46998 * 84.59187 * 10 8 6 12 12 H 1.48496 * 109.47137 * 204.59002 * 10 8 6 13 13 H 1.48498 * 109.47157 * 324.58999 * 10 8 6 14 14 C 1.47156 * 118.03716 * 309.46094 * 5 4 2 15 15 C 1.52996 * 109.68218 * 290.81395 * 14 5 4 16 16 C 1.53002 * 109.67979 * 170.26245 * 14 5 4 17 17 C 1.53299 * 108.38076 * 50.53928 * 14 5 4 18 18 O 1.42961 * 109.22166 * 307.69358 * 17 14 5 19 19 H 1.08993 * 109.47479 * 299.87842 * 1 2 3 20 20 H 1.09004 * 109.46725 * 59.87591 * 1 2 3 21 21 H 1.08999 * 109.47260 * 179.87268 * 1 2 3 22 22 H 1.08991 * 109.47452 * 180.12138 * 3 2 1 23 23 H 1.08994 * 109.46934 * 300.12626 * 3 2 1 24 24 H 1.09008 * 109.46835 * 60.12260 * 3 2 1 25 25 H 1.08993 * 109.67955 * 52.10827 * 4 2 1 26 26 H 1.09001 * 109.68027 * 172.61818 * 4 2 1 27 27 H 0.96995 * 119.99653 * 179.97438 * 9 8 6 28 28 H 1.09001 * 109.46978 * 178.92143 * 15 14 5 29 29 H 1.08994 * 109.47313 * 298.92621 * 15 14 5 30 30 H 1.09003 * 109.47181 * 58.93109 * 15 14 5 31 31 H 1.09001 * 109.46564 * 301.07189 * 16 14 5 32 32 H 1.08992 * 109.47170 * 61.07620 * 16 14 5 33 33 H 1.08996 * 109.46898 * 181.07885 * 16 14 5 34 34 H 1.09002 * 109.51190 * 67.62380 * 17 14 5 35 35 H 1.09004 * 109.51012 * 187.77095 * 17 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0421 1.4417 0.0000 4 6 2.0421 -0.7253 -1.2497 5 7 1.6959 -2.1508 -1.1335 6 6 1.0617 -2.8076 -2.1539 7 1 0.2557 -3.4929 -1.9366 8 6 1.4545 -2.5926 -3.4679 9 7 0.5593 -2.6049 -4.4328 10 14 3.2534 -2.2857 -3.8666 11 1 3.9574 -3.5853 -4.0096 12 1 3.3558 -1.5248 -5.1377 13 1 3.8770 -1.5029 -2.7695 14 6 2.0521 -2.8498 0.1115 15 6 3.5723 -2.9950 0.2041 16 6 1.3995 -4.2335 0.1303 17 6 1.5395 -2.0210 1.2949 18 8 2.0075 -0.6763 1.1656 19 1 -0.3634 0.5119 0.8910 20 1 -0.3633 0.5158 -0.8889 21 1 -0.3634 -1.0276 -0.0023 22 1 3.1320 1.4402 -0.0022 23 1 1.6777 1.9567 -0.8888 24 1 1.6813 1.9555 0.8912 25 1 1.5706 -0.3042 -2.1376 26 1 3.1240 -0.6143 -1.3211 27 1 0.8338 -2.4542 -5.3508 28 1 3.8333 -3.4960 1.1363 29 1 3.9330 -3.5846 -0.6386 30 1 4.0337 -2.0077 0.1809 31 1 0.3175 -4.1259 0.0546 32 1 1.7663 -4.8197 -0.7122 33 1 1.6498 -4.7406 1.0621 34 1 0.4495 -2.0284 1.2995 35 1 1.9112 -2.4478 2.2265 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306225860.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:49 Heat of formation + Delta-G solvation = -44.853955 kcal Electronic energy + Delta-G solvation = -16010.453167 eV Core-core repulsion = 13622.476566 eV Total energy + Delta-G solvation = -2387.976601 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.93391 -36.98849 -35.27086 -33.84447 -31.62881 -28.76700 -28.41556 -27.08594 -26.39953 -24.74268 -21.61430 -19.78353 -18.36521 -17.35285 -16.90055 -16.52732 -15.90903 -15.56889 -15.29326 -14.78031 -14.35993 -13.92377 -13.41150 -13.27854 -13.16710 -12.98932 -12.78064 -12.77928 -12.71143 -12.57478 -12.41291 -12.03154 -11.99610 -11.78568 -11.43129 -10.95330 -10.71639 -10.23968 -8.53702 -8.27064 -5.52585 1.32702 1.40612 1.49467 2.45219 2.86031 2.99607 3.31986 3.96458 4.13874 4.19726 4.20102 4.31187 4.41579 4.70845 4.74839 4.77468 4.81346 4.86482 4.93692 4.98451 5.01359 5.04018 5.06819 5.14931 5.16393 5.30608 5.45513 5.49965 5.59517 5.93779 6.28161 6.44288 7.01082 7.64905 8.19099 8.93009 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.027625 B = 0.015608 C = 0.013314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.333985 B = 1793.466576 C = 2102.480455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.092 3.908 3 C -0.130 4.130 4 C 0.124 3.876 5 N -0.599 5.599 6 C -0.249 4.249 7 H 0.048 0.952 8 C 0.005 3.995 9 N -0.924 5.924 10 Si 0.892 3.108 11 H -0.294 1.294 12 H -0.303 1.303 13 H -0.248 1.248 14 C 0.139 3.861 15 C -0.145 4.145 16 C -0.121 4.121 17 C 0.061 3.939 18 O -0.384 6.384 19 H 0.069 0.931 20 H 0.056 0.944 21 H 0.047 0.953 22 H 0.059 0.941 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.048 0.952 26 H 0.022 0.978 27 H 0.262 0.738 28 H 0.077 0.923 29 H 0.030 0.970 30 H 0.040 0.960 31 H 0.042 0.958 32 H 0.041 0.959 33 H 0.080 0.920 34 H 0.048 0.952 35 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.207 4.028 11.450 12.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.052 3.948 3 C -0.187 4.187 4 C -0.001 4.001 5 N -0.323 5.323 6 C -0.378 4.378 7 H 0.066 0.934 8 C -0.194 4.194 9 N -0.567 5.567 10 Si 0.720 3.280 11 H -0.222 1.222 12 H -0.230 1.230 13 H -0.172 1.172 14 C 0.052 3.948 15 C -0.204 4.204 16 C -0.179 4.179 17 C -0.017 4.017 18 O -0.303 6.303 19 H 0.088 0.912 20 H 0.076 0.924 21 H 0.066 0.934 22 H 0.078 0.922 23 H 0.095 0.905 24 H 0.095 0.905 25 H 0.067 0.933 26 H 0.040 0.960 27 H 0.071 0.929 28 H 0.096 0.904 29 H 0.049 0.951 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.099 0.901 34 H 0.066 0.934 35 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 3.269 4.120 11.410 12.564 hybrid contribution 0.631 -0.335 -1.345 1.523 sum 3.901 3.785 10.065 11.439 Atomic orbital electron populations 1.22120 0.95326 1.01926 1.01833 1.22061 0.93822 0.93202 0.85731 1.21698 1.01543 0.92250 1.03251 1.21899 0.96765 0.84757 0.96675 1.44518 1.68671 1.04561 1.14593 1.18423 1.10169 1.24444 0.84784 0.93400 1.26042 0.99110 0.98418 0.95832 1.70150 1.34259 1.51101 1.01144 0.86562 0.86455 0.77670 0.77304 1.22185 1.22992 1.17226 1.21036 0.93625 0.92992 0.87115 1.22080 0.96844 1.00508 1.00931 1.21649 0.99723 0.95119 1.01360 1.23048 0.98326 0.82111 0.98183 1.87823 1.72959 1.25986 1.43519 0.91174 0.92446 0.93432 0.92205 0.90473 0.90487 0.93312 0.95997 0.92906 0.90417 0.95070 0.94057 0.93881 0.93940 0.90103 0.93383 0.86908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.31 8.09 71.98 0.58 -4.73 16 2 C 0.09 3.26 1.11 -10.69 -0.01 3.25 16 3 C -0.13 -3.67 8.85 71.98 0.64 -3.03 16 4 C 0.12 5.38 3.12 86.36 0.27 5.65 16 5 N -0.60 -27.57 1.70 -650.86 -1.10 -28.67 16 6 C -0.25 -13.55 8.46 84.04 0.71 -12.84 16 7 H 0.05 2.85 6.91 -2.91 -0.02 2.83 16 8 C 0.01 0.29 4.88 84.86 0.41 0.70 16 9 N -0.92 -56.36 13.97 21.65 0.30 -56.05 16 10 Si 0.89 45.10 27.55 68.60 1.89 46.99 16 11 H -0.29 -15.04 7.11 99.48 0.71 -14.33 16 12 H -0.30 -15.41 7.11 99.48 0.71 -14.71 16 13 H -0.25 -11.95 5.23 99.48 0.52 -11.43 16 14 C 0.14 5.27 1.04 3.58 0.00 5.28 16 15 C -0.14 -5.14 8.54 71.98 0.61 -4.53 16 16 C -0.12 -4.32 7.37 71.98 0.53 -3.79 16 17 C 0.06 2.00 5.27 72.08 0.38 2.38 16 18 O -0.38 -13.42 9.87 -148.98 -1.47 -14.89 16 19 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 20 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 21 H 0.05 1.85 6.11 -2.39 -0.01 1.83 16 22 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 23 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 24 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 25 H 0.05 2.30 7.33 -2.39 -0.02 2.28 16 26 H 0.02 0.99 6.07 -2.39 -0.01 0.97 16 27 H 0.26 15.27 8.31 -92.71 -0.77 14.49 16 28 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.04 1.53 7.20 -2.39 -0.02 1.51 16 31 H 0.04 1.62 7.52 -2.39 -0.02 1.60 16 32 H 0.04 1.69 7.69 -2.39 -0.02 1.68 16 33 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.05 1.61 6.25 -2.39 -0.01 1.60 16 35 H 0.11 2.97 8.14 -2.39 -0.02 2.95 16 Total: -1.00 -62.60 265.96 4.60 -57.99 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: 0.85 Total: 6.29 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: 4.13 Total: -11.65 kcal Atomic # 7 Polarization: -83.92 SS G_CDS: -0.80 Total: -84.73 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: -1.47 Total: -14.89 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.89 Total: 46.99 kcal Total: -62.60 4.60 -57.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306225860.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.139 kcal (2) G-P(sol) polarization free energy of solvation -62.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds