Wall clock time and date at job start Sun Mar 29 2020 22:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52994 * 109.47793 * 2 1 4 4 C 1.52998 * 109.44825 * 301.97156 * 3 2 1 5 5 O 1.42897 * 109.47172 * 305.15442 * 4 3 2 6 6 C 1.53044 * 109.45625 * 61.93409 * 3 2 1 7 7 C 1.53191 * 109.31395 * 58.65854 * 6 3 2 8 8 N 1.46927 * 108.77333 * 54.63677 * 7 6 3 9 9 C 1.36928 * 120.63373 * 126.37255 * 8 7 6 10 10 H 1.08006 * 119.99799 * 332.11579 * 9 8 7 11 11 C 1.38810 * 120.00505 * 151.84286 * 9 8 7 12 12 N 1.31619 * 119.99817 * 344.80778 * 11 9 8 13 13 Si 1.86802 * 120.00229 * 164.80789 * 11 9 8 14 14 H 1.48499 * 109.46934 * 90.00172 * 13 11 9 15 15 H 1.48497 * 109.47125 * 210.00266 * 13 11 9 16 16 H 1.48498 * 109.46938 * 330.00039 * 13 11 9 17 17 C 1.46929 * 118.73839 * 306.63958 * 8 7 6 18 18 C 1.52769 * 109.00579 * 53.31050 * 17 8 7 19 19 H 1.09007 * 109.47021 * 304.14638 * 1 2 3 20 20 H 1.09000 * 109.47230 * 64.14115 * 1 2 3 21 21 H 1.08999 * 109.47687 * 184.14526 * 1 2 3 22 22 H 1.09001 * 109.46835 * 239.99954 * 2 1 3 23 23 H 1.09001 * 109.47275 * 120.00734 * 2 1 3 24 24 H 1.09002 * 109.47394 * 65.15392 * 4 3 2 25 25 H 1.09005 * 109.47092 * 185.15307 * 4 3 2 26 26 H 0.96702 * 114.00393 * 179.97438 * 5 4 3 27 27 H 1.08999 * 109.50056 * 298.70447 * 6 3 2 28 28 H 1.09002 * 109.49918 * 178.60953 * 6 3 2 29 29 H 1.08996 * 109.58476 * 294.84702 * 7 6 3 30 30 H 1.09003 * 109.70204 * 174.48715 * 7 6 3 31 31 H 0.96997 * 120.00382 * 179.97438 * 12 11 9 32 32 H 1.08993 * 109.59012 * 173.14475 * 17 8 7 33 33 H 1.09002 * 109.59108 * 293.57582 * 17 8 7 34 34 H 1.08998 * 109.56506 * 185.55019 * 18 17 8 35 35 H 1.08998 * 109.37935 * 65.51608 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.4898 2.1774 -1.2238 5 8 1.8265 1.4506 -2.4072 6 6 1.5700 2.1494 1.2734 7 6 2.0940 1.3910 2.4969 8 7 3.5530 1.2601 2.3829 9 6 4.3722 1.6750 3.3986 10 1 4.0556 2.4707 4.0569 11 6 5.6070 1.0693 3.5859 12 7 5.8718 -0.0797 3.0012 13 14 6.8930 1.8849 4.6679 14 1 6.7299 1.4181 6.0681 15 1 8.2492 1.5259 4.1812 16 1 6.7221 3.3590 4.6144 17 6 4.1167 0.6811 1.1558 18 6 3.5696 1.4423 -0.0504 19 1 -0.3633 0.5769 0.8506 20 1 -0.3634 0.4482 -0.9248 21 1 -0.3634 -1.0249 0.0743 22 1 1.8932 -0.5139 -0.8900 23 1 1.8933 -0.5139 0.8899 24 1 0.4057 2.2572 -1.1427 25 1 1.9248 3.1755 -1.2743 26 1 1.5083 1.8593 -3.2238 27 1 0.4804 2.1697 1.2971 28 1 1.9537 3.1695 1.2859 29 1 1.6402 0.4007 2.5349 30 1 1.8464 1.9416 3.4044 31 1 6.7348 -0.5029 3.1317 32 1 5.2031 0.7656 1.1774 33 1 3.8311 -0.3683 1.0822 34 1 3.9033 0.9594 -0.9689 35 1 3.9344 2.4691 -0.0260 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306234270.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:25 Heat of formation + Delta-G solvation = -43.299781 kcal Electronic energy + Delta-G solvation = -15465.837320 eV Core-core repulsion = 13077.928113 eV Total energy + Delta-G solvation = -2387.909207 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.09301 -36.06612 -33.91808 -31.31089 -30.24418 -29.25060 -26.60798 -23.87364 -23.21233 -21.90265 -20.48033 -17.63392 -17.04920 -16.40653 -14.94888 -14.81334 -14.51104 -13.94352 -13.43272 -13.22973 -12.83330 -12.77612 -12.08976 -11.86191 -11.63588 -11.30764 -10.98877 -10.85865 -10.62796 -10.46529 -10.20615 -10.10950 -9.95347 -9.66676 -9.54354 -9.35132 -9.17373 -8.36786 -6.55145 -5.70685 -3.13597 3.41042 3.47706 3.50104 4.53213 4.55863 5.25784 5.35169 5.42971 5.49103 5.56560 5.72475 5.78082 5.87727 5.91246 6.11774 6.20887 6.30355 6.34747 6.41692 6.60569 6.68746 6.77174 6.80948 6.86301 7.00042 7.08082 7.14543 7.51399 7.80030 7.86080 7.87755 8.53899 9.30103 9.93819 10.51192 11.37353 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.049618 B = 0.008810 C = 0.008505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.173368 B = 3177.350577 C = 3291.358241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.110 4.110 3 C -0.045 4.045 4 C 0.085 3.915 5 O -0.566 6.566 6 C -0.124 4.124 7 C 0.147 3.853 8 N -0.592 5.592 9 C -0.250 4.250 10 H 0.064 0.936 11 C 0.000 4.000 12 N -0.903 5.903 13 Si 0.901 3.099 14 H -0.288 1.288 15 H -0.290 1.290 16 H -0.280 1.280 17 C 0.171 3.829 18 C -0.126 4.126 19 H 0.053 0.947 20 H 0.046 0.954 21 H 0.045 0.955 22 H 0.061 0.939 23 H 0.073 0.927 24 H 0.039 0.961 25 H 0.037 0.963 26 H 0.367 0.633 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.021 0.979 30 H 0.050 0.950 31 H 0.253 0.747 32 H 0.085 0.915 33 H 0.019 0.981 34 H 0.054 0.946 35 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.074 3.334 -7.753 12.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.147 4.147 3 C -0.046 4.046 4 C 0.007 3.993 5 O -0.370 6.370 6 C -0.163 4.163 7 C 0.021 3.979 8 N -0.315 5.315 9 C -0.380 4.380 10 H 0.081 0.919 11 C -0.198 4.198 12 N -0.548 5.548 13 Si 0.731 3.269 14 H -0.215 1.215 15 H -0.216 1.216 16 H -0.206 1.206 17 C 0.045 3.955 18 C -0.165 4.165 19 H 0.072 0.928 20 H 0.065 0.935 21 H 0.064 0.936 22 H 0.079 0.921 23 H 0.091 0.909 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.212 0.788 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.039 0.961 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.103 0.897 33 H 0.037 0.963 34 H 0.073 0.927 35 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -8.630 2.833 -7.273 11.636 hybrid contribution 0.417 0.831 0.113 0.937 sum -8.213 3.664 -7.160 11.495 Atomic orbital electron populations 1.21845 0.97131 1.00734 1.00949 1.21515 0.94513 0.96237 1.02474 1.20455 0.96874 0.95215 0.92023 1.22378 0.97403 0.93959 0.85561 1.86548 1.81366 1.53070 1.16017 1.22065 0.98612 0.99638 0.96033 1.20882 0.86195 0.96477 0.94367 1.44035 0.99352 1.72914 1.15231 1.19183 0.98173 1.12286 1.08320 0.91877 1.25048 0.99922 0.95472 0.99348 1.70022 1.22621 1.15264 1.46925 0.86312 0.81303 0.79073 0.80173 1.21472 1.21617 1.20588 1.20725 0.99396 0.93050 0.82321 1.22099 0.93206 1.01002 1.00243 0.92781 0.93461 0.93606 0.92068 0.90865 0.94323 0.94487 0.78752 0.92978 0.92562 0.96143 0.93131 0.93732 0.89668 0.96266 0.92750 0.93323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.18 37.15 0.34 -1.81 16 2 C -0.11 -1.92 3.99 -26.74 -0.11 -2.02 16 3 C -0.05 -0.80 0.38 -154.47 -0.06 -0.86 16 4 C 0.08 1.24 5.35 37.16 0.20 1.43 16 5 O -0.57 -8.02 12.33 -35.23 -0.43 -8.46 16 6 C -0.12 -2.22 4.57 -26.61 -0.12 -2.34 16 7 C 0.15 3.16 6.05 -3.71 -0.02 3.14 16 8 N -0.59 -15.25 3.00 -172.58 -0.52 -15.77 16 9 C -0.25 -7.02 9.59 -15.06 -0.14 -7.17 16 10 H 0.06 1.74 7.88 -52.48 -0.41 1.32 16 11 C 0.00 0.01 4.96 -17.43 -0.09 -0.08 16 12 N -0.90 -26.82 11.10 55.49 0.62 -26.21 16 13 Si 0.90 22.11 29.58 -169.99 -5.03 17.08 16 14 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 15 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 17 C 0.17 4.24 4.80 -3.93 -0.02 4.22 16 18 C -0.13 -2.61 4.80 -26.83 -0.13 -2.74 16 19 H 0.05 0.76 6.30 -51.92 -0.33 0.43 16 20 H 0.05 0.63 6.75 -51.93 -0.35 0.28 16 21 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 22 H 0.06 1.10 7.62 -51.93 -0.40 0.71 16 23 H 0.07 1.46 4.99 -51.93 -0.26 1.20 16 24 H 0.04 0.50 6.78 -51.93 -0.35 0.15 16 25 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.37 3.33 9.12 45.56 0.42 3.75 16 27 H 0.05 0.80 6.45 -51.93 -0.34 0.47 16 28 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.02 0.45 6.65 -51.93 -0.35 0.10 16 30 H 0.05 1.06 7.93 -51.93 -0.41 0.65 16 31 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 32 H 0.09 2.38 6.02 -51.93 -0.31 2.07 16 33 H 0.02 0.50 6.75 -51.93 -0.35 0.15 16 34 H 0.05 1.10 7.79 -51.93 -0.40 0.70 16 35 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 262.91 15.07 3.96 3.96 Total: -1.00 -30.73 262.91 -6.22 -36.95 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -4.67 Total: 0.66 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: -0.15 Total: -8.22 kcal Atomic # 7 Polarization: -42.07 SS G_CDS: 0.10 Total: -41.97 kcal Atomic # 8 Polarization: -8.02 SS G_CDS: -0.43 Total: -8.46 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.03 Total: 17.08 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -30.73 -6.22 -36.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306234270.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.353 kcal (2) G-P(sol) polarization free energy of solvation -30.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds