Wall clock time and date at job start Sun Mar 29 2020 21:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.45452 * 2 1 4 4 C 1.54806 * 109.45790 * 240.03003 * 2 1 3 5 5 O 1.38012 * 109.47474 * 172.09841 * 4 2 1 6 6 C 1.42151 * 119.44041 * 63.42153 * 5 4 2 7 7 C 1.51546 * 108.75517 * 272.77255 * 6 5 4 8 8 C 1.53566 * 109.57974 * 91.40678 * 7 6 5 9 9 N 1.45120 * 109.45759 * 119.95429 * 2 1 3 10 10 C 1.34779 * 118.75868 * 29.29020 * 9 2 1 11 11 O 1.21684 * 120.00184 * 5.11312 * 10 9 2 12 12 C 1.46377 * 119.99807 * 185.12067 * 10 9 2 13 13 H 1.07997 * 120.00008 * 8.74422 * 12 10 9 14 14 C 1.40050 * 120.00040 * 188.74842 * 12 10 9 15 15 N 1.30682 * 119.99692 * 354.43149 * 14 12 10 16 16 Si 1.86790 * 120.00155 * 174.43737 * 14 12 10 17 17 H 1.48503 * 109.47426 * 94.98712 * 16 14 12 18 18 H 1.48500 * 109.47075 * 214.98691 * 16 14 12 19 19 H 1.48499 * 109.47216 * 334.98984 * 16 14 12 20 20 H 1.09005 * 109.46794 * 164.95229 * 1 2 3 21 21 H 1.08998 * 109.46914 * 44.95813 * 1 2 3 22 22 H 1.08996 * 109.47458 * 284.95590 * 1 2 3 23 23 H 1.08997 * 109.46924 * 292.09780 * 4 2 1 24 24 H 1.08995 * 109.47259 * 52.09663 * 4 2 1 25 25 H 1.08999 * 109.59153 * 32.55246 * 6 5 4 26 26 H 1.09003 * 109.59533 * 152.99002 * 6 5 4 27 27 H 1.09003 * 109.44919 * 211.44195 * 7 6 5 28 28 H 1.08997 * 109.45104 * 331.37206 * 7 6 5 29 29 H 1.09004 * 109.17002 * 80.42105 * 8 7 6 30 30 H 1.09007 * 109.16721 * 199.67225 * 8 7 6 31 31 H 0.96996 * 119.99640 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0457 -0.7292 -1.2645 5 8 3.4142 -0.5765 -1.3577 6 6 4.2490 -1.1254 -0.3466 7 6 4.3926 -0.1114 0.7704 8 6 3.3004 -0.3479 1.8237 9 7 2.0135 -0.6832 1.1855 10 6 1.2578 -1.6607 1.7241 11 8 0.2383 -2.0195 1.1651 12 6 1.6636 -2.2907 2.9815 13 1 2.4856 -1.8814 3.5499 14 6 0.9859 -3.4243 3.4474 15 7 -0.0755 -3.8554 2.8186 16 14 1.5991 -4.3200 4.9675 17 1 0.8665 -3.8274 6.1617 18 1 1.3661 -5.7782 4.8106 19 1 3.0522 -4.0666 5.1390 20 1 -0.3633 -0.9925 -0.2668 21 1 -0.3633 0.7272 -0.7261 22 1 -0.3634 0.2652 0.9928 23 1 1.8023 -1.7894 -1.1971 24 1 1.5715 -0.3029 -2.1485 25 1 3.7984 -2.0379 0.0439 26 1 5.2303 -1.3499 -0.7647 27 1 5.3733 -0.2185 1.2340 28 1 4.2920 0.8944 0.3627 29 1 3.6021 -1.1690 2.4740 30 1 3.1780 0.5555 2.4214 31 1 -0.5446 -4.6407 3.1411 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306286050.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:22 Heat of formation + Delta-G solvation = -70.174576 kcal Electronic energy + Delta-G solvation = -15311.474288 eV Core-core repulsion = 12786.566608 eV Total energy + Delta-G solvation = -2524.907680 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.44946 -37.00726 -34.06225 -33.25946 -32.16217 -29.45322 -26.30529 -26.04987 -24.36440 -21.66980 -20.76035 -18.75849 -16.45015 -15.90744 -15.78146 -15.61635 -15.23664 -14.37353 -13.65332 -13.30574 -12.83699 -12.55766 -12.19101 -11.62986 -11.40569 -11.32604 -11.13841 -11.01536 -10.78458 -10.54277 -10.48777 -10.29479 -10.02903 -9.84680 -9.01104 -8.86017 -7.27777 -7.17653 -6.19355 -4.67439 3.10131 3.18136 3.20967 4.05450 4.26905 4.48128 4.52462 5.33454 5.43283 5.57090 5.63495 5.79304 5.88219 5.97828 6.00432 6.21397 6.27447 6.38646 6.43208 6.48068 6.58847 6.64471 6.90128 7.34951 7.42329 7.63657 8.08911 8.17476 8.35985 8.99568 9.39615 10.54870 10.74318 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.036954 B = 0.011486 C = 0.009804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.506926 B = 2437.235298 C = 2855.201185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.122 3.878 3 H 0.058 0.942 4 C 0.063 3.937 5 O -0.398 6.398 6 C 0.076 3.924 7 C -0.165 4.165 8 C 0.121 3.879 9 N -0.641 5.641 10 C 0.555 3.445 11 O -0.567 6.567 12 C -0.547 4.547 13 H 0.071 0.929 14 C 0.089 3.911 15 N -0.767 5.767 16 Si 0.904 3.096 17 H -0.273 1.273 18 H -0.279 1.279 19 H -0.264 1.264 20 H 0.097 0.903 21 H 0.026 0.974 22 H 0.052 0.948 23 H 0.046 0.954 24 H 0.088 0.912 25 H 0.060 0.940 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.091 0.909 30 H 0.040 0.960 31 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.879 4.739 -2.632 8.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.016 3.984 3 H 0.076 0.924 4 C -0.016 4.016 5 O -0.317 6.317 6 C 0.000 4.000 7 C -0.204 4.204 8 C -0.003 4.003 9 N -0.380 5.380 10 C 0.361 3.639 11 O -0.450 6.450 12 C -0.583 4.583 13 H 0.089 0.911 14 C -0.131 4.131 15 N -0.395 5.395 16 Si 0.728 3.272 17 H -0.198 1.198 18 H -0.204 1.204 19 H -0.188 1.188 20 H 0.116 0.884 21 H 0.044 0.956 22 H 0.071 0.929 23 H 0.065 0.935 24 H 0.106 0.894 25 H 0.079 0.921 26 H 0.096 0.904 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.109 0.891 30 H 0.058 0.942 31 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.234 4.510 -3.089 8.291 hybrid contribution 0.289 -0.450 1.157 1.275 sum 6.523 4.060 -1.932 7.923 Atomic orbital electron populations 1.22172 0.93833 1.03377 1.00702 1.21488 0.95556 0.94846 0.86476 0.92360 1.22622 0.80704 1.00188 0.98036 1.86137 1.17695 1.78899 1.48957 1.22117 0.93427 0.96220 0.88236 1.22498 0.99451 1.00565 0.97840 1.21637 0.83764 1.00718 0.94189 1.48079 1.20855 1.40309 1.28735 1.18240 0.82542 0.77550 0.85608 1.90521 1.26559 1.63622 1.64316 1.21038 1.18144 1.13074 1.06083 0.91075 1.25714 0.93574 0.96717 0.97104 1.70016 1.13615 1.19856 1.36033 0.86420 0.79940 0.78856 0.81957 1.19843 1.20417 1.18849 0.88413 0.95561 0.92902 0.93533 0.89365 0.92139 0.90377 0.90829 0.91460 0.89117 0.94200 0.92138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 7.82 37.16 0.29 -2.75 16 2 C 0.12 2.49 2.72 -67.72 -0.18 2.30 16 3 H 0.06 1.10 8.11 -51.93 -0.42 0.68 16 4 C 0.06 1.21 6.07 38.11 0.23 1.44 16 5 O -0.40 -7.32 9.86 -26.53 -0.26 -7.58 16 6 C 0.08 1.28 6.38 36.42 0.23 1.52 16 7 C -0.16 -2.56 5.78 -27.17 -0.16 -2.72 16 8 C 0.12 2.28 5.88 -3.20 -0.02 2.26 16 9 N -0.64 -14.50 2.16 -166.52 -0.36 -14.86 16 10 C 0.55 15.26 7.07 -12.99 -0.09 15.17 16 11 O -0.57 -17.22 11.44 5.20 0.06 -17.16 16 12 C -0.55 -14.98 8.55 -35.63 -0.30 -15.28 16 13 H 0.07 1.79 6.01 -52.49 -0.32 1.48 16 14 C 0.09 2.42 5.50 -17.36 -0.10 2.32 16 15 N -0.77 -22.41 11.86 55.55 0.66 -21.75 16 16 Si 0.90 19.75 29.56 -169.99 -5.03 14.73 16 17 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 18 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 19 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 20 H 0.10 2.36 5.95 -51.93 -0.31 2.05 16 21 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 22 H 0.05 1.22 7.72 -51.93 -0.40 0.82 16 23 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 24 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 25 H 0.06 1.18 7.40 -51.93 -0.38 0.79 16 26 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.07 1.03 8.01 -51.93 -0.42 0.61 16 29 H 0.09 1.78 5.65 -51.93 -0.29 1.49 16 30 H 0.04 0.71 8.14 -51.92 -0.42 0.29 16 31 H 0.27 7.14 8.29 -40.82 -0.34 6.80 16 LS Contribution 247.98 15.07 3.74 3.74 Total: -1.00 -31.50 247.98 -5.50 -37.00 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -4.21 Total: 1.62 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: -0.10 Total: 4.26 kcal Atomic # 7 Polarization: -36.90 SS G_CDS: 0.30 Total: -36.61 kcal Atomic # 8 Polarization: -24.54 SS G_CDS: -0.20 Total: -24.74 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.03 Total: 14.73 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -31.50 -5.50 -37.00 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306286050.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.171 kcal (2) G-P(sol) polarization free energy of solvation -31.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds