Wall clock time and date at job start Sun Mar 29 2020 21:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 110.04875 * 2 1 4 4 C 1.46914 * 109.98886 * 121.33298 * 2 1 3 5 5 O 1.42382 * 113.78991 * 176.12319 * 4 2 1 6 6 C 1.39646 * 108.63443 * 267.45451 * 5 4 2 7 7 C 1.55190 * 110.56830 * 101.16649 * 6 5 4 8 8 C 1.54781 * 108.79992 * 322.07571 * 7 6 5 9 9 N 1.43419 * 116.58270 * 319.48661 * 8 7 6 10 10 C 1.34767 * 120.64004 * 269.50093 * 9 8 7 11 11 O 1.21690 * 120.00133 * 173.98916 * 10 9 8 12 12 C 1.46376 * 119.99914 * 353.98835 * 10 9 8 13 13 H 1.07997 * 120.00031 * 359.97438 * 12 10 9 14 14 C 1.40053 * 119.99956 * 180.02562 * 12 10 9 15 15 N 1.30665 * 120.00128 * 359.97438 * 14 12 10 16 16 Si 1.86805 * 119.99548 * 180.02562 * 14 12 10 17 17 H 1.48492 * 109.47510 * 89.99759 * 16 14 12 18 18 H 1.48504 * 109.46567 * 209.99491 * 16 14 12 19 19 H 1.48495 * 109.47171 * 329.99064 * 16 14 12 20 20 H 1.08997 * 109.47380 * 187.50691 * 1 2 3 21 21 H 1.09004 * 109.47295 * 307.50630 * 1 2 3 22 22 H 1.09000 * 109.47008 * 67.50038 * 1 2 3 23 23 H 1.09008 * 108.61917 * 297.23525 * 4 2 1 24 24 H 1.08995 * 108.62464 * 55.00724 * 4 2 1 25 25 H 1.09000 * 109.25431 * 221.45371 * 6 5 4 26 26 H 1.09002 * 109.25688 * 340.92919 * 6 5 4 27 27 H 1.09000 * 109.56643 * 81.96324 * 7 6 5 28 28 H 1.08998 * 109.57173 * 202.19732 * 7 6 5 29 29 H 1.09001 * 107.84011 * 197.72134 * 8 7 6 30 30 H 1.08997 * 108.05487 * 81.42886 * 8 7 6 31 31 H 0.96999 * 120.00022 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9037 1.0240 0.0000 4 6 2.0322 -0.7179 1.1793 5 8 3.4501 -0.8428 1.2150 6 6 3.8066 -2.0535 0.6173 7 6 4.3065 -1.8192 -0.8331 8 6 3.4501 -0.7050 -1.4819 9 7 2.0432 -0.7336 -1.2050 10 6 1.1988 -1.4107 -2.0079 11 8 0.0255 -1.5192 -1.7038 12 6 1.6929 -2.0156 -3.2459 13 1 2.7340 -1.9189 -3.5161 14 6 0.8152 -2.7188 -4.0806 15 7 -0.4446 -2.8353 -3.7540 16 14 1.4460 -3.4913 -5.6601 17 1 1.9012 -4.8779 -5.3857 18 1 0.3554 -3.5186 -6.6676 19 1 2.5828 -2.6914 -6.1827 20 1 -0.3634 -1.0188 0.1343 21 1 -0.3634 0.6257 0.8153 22 1 -0.3633 0.3933 -0.9494 23 1 1.7069 -0.1875 2.0743 24 1 1.5946 -1.7161 1.1916 25 1 4.5999 -2.5220 1.1998 26 1 2.9390 -2.7130 0.5958 27 1 5.3526 -1.5135 -0.8138 28 1 4.2059 -2.7402 -1.4072 29 1 3.5844 -0.7668 -2.5619 30 1 3.8413 0.2572 -1.1517 31 1 -1.0525 -3.3220 -4.3323 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306286052.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:25 Heat of formation + Delta-G solvation = -63.974924 kcal Electronic energy + Delta-G solvation = -15309.815150 eV Core-core repulsion = 12785.176307 eV Total energy + Delta-G solvation = -2524.638843 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.59281 -37.07873 -33.95641 -33.34384 -32.26808 -29.38371 -26.12144 -26.04746 -24.62861 -21.69153 -20.79503 -18.85686 -16.51910 -16.09947 -15.75091 -15.46209 -14.84650 -14.24204 -13.81558 -13.51392 -12.88003 -12.43375 -12.22265 -11.56355 -11.31807 -11.26249 -11.11323 -11.00842 -10.87405 -10.69858 -10.38595 -10.21432 -10.13143 -9.92474 -9.11278 -8.87009 -7.25727 -7.16727 -6.16304 -4.66009 3.11375 3.18992 3.21834 4.04467 4.40524 4.44017 4.54015 5.41530 5.47312 5.62390 5.66200 5.74208 5.81891 5.94416 6.02892 6.08756 6.21455 6.34135 6.44428 6.47794 6.60746 6.68654 6.95536 7.32690 7.43794 7.59988 7.69910 8.12281 8.33190 9.00943 9.48026 10.55725 10.74787 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.037697 B = 0.011638 C = 0.009593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.592077 B = 2405.349016 C = 2917.947298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.121 3.879 3 H 0.061 0.939 4 C 0.044 3.956 5 O -0.363 6.363 6 C 0.058 3.942 7 C -0.164 4.164 8 C 0.134 3.866 9 N -0.636 5.636 10 C 0.558 3.442 11 O -0.569 6.569 12 C -0.542 4.542 13 H 0.071 0.929 14 C 0.088 3.912 15 N -0.767 5.767 16 Si 0.904 3.096 17 H -0.272 1.272 18 H -0.279 1.279 19 H -0.265 1.265 20 H 0.081 0.919 21 H 0.023 0.977 22 H 0.068 0.932 23 H 0.073 0.927 24 H 0.058 0.942 25 H 0.064 0.936 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.044 0.956 31 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.466 1.870 4.993 8.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.018 3.982 3 H 0.079 0.921 4 C -0.034 4.034 5 O -0.281 6.281 6 C -0.020 4.020 7 C -0.204 4.204 8 C 0.008 3.992 9 N -0.375 5.375 10 C 0.364 3.636 11 O -0.452 6.452 12 C -0.579 4.579 13 H 0.089 0.911 14 C -0.131 4.131 15 N -0.396 5.396 16 Si 0.729 3.271 17 H -0.198 1.198 18 H -0.205 1.205 19 H -0.189 1.189 20 H 0.100 0.900 21 H 0.042 0.958 22 H 0.087 0.913 23 H 0.091 0.909 24 H 0.076 0.924 25 H 0.083 0.917 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.062 0.938 31 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.737 1.893 5.183 7.960 hybrid contribution 0.407 -0.599 -0.945 1.190 sum 6.144 1.295 4.238 7.575 Atomic orbital electron populations 1.21962 0.92171 1.03269 1.00544 1.20934 0.96159 0.95068 0.86086 0.92125 1.22051 0.81387 1.01494 0.98457 1.87577 1.21793 1.39940 1.78780 1.22541 0.99754 0.86331 0.93384 1.23302 0.99281 1.01380 0.96471 1.20498 0.82561 0.96099 1.00075 1.48204 1.05925 1.55487 1.27860 1.18222 0.84734 0.77415 0.83227 1.90594 1.17351 1.62821 1.74445 1.21035 0.96412 1.35535 1.04887 0.91088 1.25713 0.94326 0.94669 0.98423 1.70007 1.03464 1.31252 1.34861 0.86427 0.79218 0.79842 0.81633 1.19780 1.20475 1.18901 0.89992 0.95829 0.91260 0.90878 0.92404 0.91744 0.92593 0.91705 0.90987 0.90954 0.93790 0.92158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.53 7.64 37.16 0.28 -2.25 16 2 C 0.12 2.40 3.41 -68.82 -0.24 2.17 16 3 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 4 C 0.04 0.77 5.27 34.24 0.18 0.95 16 5 O -0.36 -6.45 10.24 -31.95 -0.33 -6.78 16 6 C 0.06 0.97 6.38 38.32 0.24 1.21 16 7 C -0.16 -2.81 6.74 -24.63 -0.17 -2.97 16 8 C 0.13 2.65 4.88 -4.73 -0.02 2.62 16 9 N -0.64 -14.50 2.59 -169.46 -0.44 -14.94 16 10 C 0.56 15.37 7.45 -12.99 -0.10 15.28 16 11 O -0.57 -17.21 10.80 5.20 0.06 -17.15 16 12 C -0.54 -14.92 8.77 -35.63 -0.31 -15.23 16 13 H 0.07 1.81 5.95 -52.49 -0.31 1.50 16 14 C 0.09 2.41 5.50 -17.37 -0.10 2.32 16 15 N -0.77 -22.42 11.83 55.55 0.66 -21.76 16 16 Si 0.90 19.88 29.56 -169.99 -5.02 14.85 16 17 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 18 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 19 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 20 H 0.08 1.91 6.47 -51.93 -0.34 1.57 16 21 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 22 H 0.07 1.63 7.10 -51.93 -0.37 1.26 16 23 H 0.07 1.11 8.14 -51.92 -0.42 0.69 16 24 H 0.06 1.09 6.67 -51.93 -0.35 0.75 16 25 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.06 1.02 6.66 -51.93 -0.35 0.68 16 27 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.07 1.48 5.84 -51.93 -0.30 1.18 16 30 H 0.04 0.81 7.99 -51.93 -0.41 0.39 16 31 H 0.27 7.14 8.29 -40.82 -0.34 6.80 16 LS Contribution 246.20 15.07 3.71 3.71 Total: -1.00 -31.27 246.20 -5.69 -36.96 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -4.10 Total: 1.00 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: -0.22 Total: 4.10 kcal Atomic # 7 Polarization: -36.92 SS G_CDS: 0.22 Total: -36.70 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: -0.27 Total: -23.93 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.85 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -31.27 -5.69 -36.96 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306286052.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.016 kcal (2) G-P(sol) polarization free energy of solvation -31.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds