Wall clock time and date at job start Sun Mar 29 2020 21:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 110.04875 * 2 1 4 4 C 1.46914 * 109.98886 * 121.33298 * 2 1 3 5 5 O 1.42382 * 113.78991 * 176.12319 * 4 2 1 6 6 C 1.39646 * 108.63443 * 267.45451 * 5 4 2 7 7 C 1.55190 * 110.56830 * 101.16649 * 6 5 4 8 8 C 1.54781 * 108.79992 * 322.07571 * 7 6 5 9 9 N 1.43419 * 116.58270 * 319.48661 * 8 7 6 10 10 C 1.34767 * 120.64004 * 269.50093 * 9 8 7 11 11 O 1.21690 * 120.00133 * 173.98916 * 10 9 8 12 12 C 1.46376 * 119.99914 * 353.98835 * 10 9 8 13 13 H 1.07997 * 120.00031 * 359.97438 * 12 10 9 14 14 C 1.40053 * 119.99956 * 180.02562 * 12 10 9 15 15 N 1.30665 * 120.00128 * 359.97438 * 14 12 10 16 16 Si 1.86805 * 119.99548 * 180.02562 * 14 12 10 17 17 H 1.48492 * 109.47510 * 89.99759 * 16 14 12 18 18 H 1.48504 * 109.46567 * 209.99491 * 16 14 12 19 19 H 1.48495 * 109.47171 * 329.99064 * 16 14 12 20 20 H 1.08997 * 109.47380 * 187.50691 * 1 2 3 21 21 H 1.09004 * 109.47295 * 307.50630 * 1 2 3 22 22 H 1.09000 * 109.47008 * 67.50038 * 1 2 3 23 23 H 1.09008 * 108.61917 * 297.23525 * 4 2 1 24 24 H 1.08995 * 108.62464 * 55.00724 * 4 2 1 25 25 H 1.09000 * 109.25431 * 221.45371 * 6 5 4 26 26 H 1.09002 * 109.25688 * 340.92919 * 6 5 4 27 27 H 1.09000 * 109.56643 * 81.96324 * 7 6 5 28 28 H 1.08998 * 109.57173 * 202.19732 * 7 6 5 29 29 H 1.09001 * 107.84011 * 197.72134 * 8 7 6 30 30 H 1.08997 * 108.05487 * 81.42886 * 8 7 6 31 31 H 0.96999 * 120.00022 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9037 1.0240 0.0000 4 6 2.0322 -0.7179 1.1793 5 8 3.4501 -0.8428 1.2150 6 6 3.8066 -2.0535 0.6173 7 6 4.3065 -1.8192 -0.8331 8 6 3.4501 -0.7050 -1.4819 9 7 2.0432 -0.7336 -1.2050 10 6 1.1988 -1.4107 -2.0079 11 8 0.0255 -1.5192 -1.7038 12 6 1.6929 -2.0156 -3.2459 13 1 2.7340 -1.9189 -3.5161 14 6 0.8152 -2.7188 -4.0806 15 7 -0.4446 -2.8353 -3.7540 16 14 1.4460 -3.4913 -5.6601 17 1 1.9012 -4.8779 -5.3857 18 1 0.3554 -3.5186 -6.6676 19 1 2.5828 -2.6914 -6.1827 20 1 -0.3634 -1.0188 0.1343 21 1 -0.3634 0.6257 0.8153 22 1 -0.3633 0.3933 -0.9494 23 1 1.7069 -0.1875 2.0743 24 1 1.5946 -1.7161 1.1916 25 1 4.5999 -2.5220 1.1998 26 1 2.9390 -2.7130 0.5958 27 1 5.3526 -1.5135 -0.8138 28 1 4.2059 -2.7402 -1.4072 29 1 3.5844 -0.7668 -2.5619 30 1 3.8413 0.2572 -1.1517 31 1 -1.0525 -3.3220 -4.3323 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306286052.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:25 Heat of formation + Delta-G solvation = -85.698725 kcal Electronic energy + Delta-G solvation = -15310.757165 eV Core-core repulsion = 12785.176307 eV Total energy + Delta-G solvation = -2525.580858 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.17497 -38.87320 -35.79034 -35.03250 -34.21019 -31.00032 -28.16407 -27.62141 -26.16566 -23.46898 -22.27852 -20.71463 -18.29334 -17.66870 -17.56948 -17.10192 -16.47850 -15.90068 -15.46162 -15.17718 -14.66363 -14.07919 -13.88537 -13.22334 -13.11728 -13.01268 -12.81090 -12.71021 -12.63981 -12.36485 -12.11739 -11.89710 -11.71378 -11.48085 -10.90836 -10.52951 -9.31657 -9.00693 -8.20844 -6.80252 1.38745 1.39406 1.53982 2.22483 2.48472 2.72822 3.02541 3.64003 3.95481 4.16070 4.18327 4.21798 4.30193 4.42140 4.56986 4.66405 4.68658 4.84556 4.96737 5.03866 5.08442 5.19767 5.24967 5.40407 5.60111 5.83353 6.18211 6.20633 6.39520 6.91332 7.52440 8.51786 8.70775 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.037697 B = 0.011638 C = 0.009593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.592077 B = 2405.349016 C = 2917.947298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.116 3.884 3 H 0.082 0.918 4 C 0.050 3.950 5 O -0.361 6.361 6 C 0.057 3.943 7 C -0.158 4.158 8 C 0.126 3.874 9 N -0.640 5.640 10 C 0.542 3.458 11 O -0.609 6.609 12 C -0.568 4.568 13 H 0.085 0.915 14 C 0.033 3.967 15 N -0.819 5.819 16 Si 0.988 3.012 17 H -0.262 1.262 18 H -0.275 1.275 19 H -0.251 1.251 20 H 0.048 0.952 21 H 0.066 0.934 22 H 0.031 0.969 23 H 0.108 0.892 24 H 0.039 0.961 25 H 0.098 0.902 26 H 0.032 0.968 27 H 0.098 0.902 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.607 2.138 5.269 10.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.014 3.986 3 H 0.100 0.900 4 C -0.027 4.027 5 O -0.279 6.279 6 C -0.021 4.021 7 C -0.198 4.198 8 C 0.001 3.999 9 N -0.377 5.377 10 C 0.348 3.652 11 O -0.495 6.495 12 C -0.604 4.604 13 H 0.103 0.897 14 C -0.182 4.182 15 N -0.449 5.449 16 Si 0.808 3.192 17 H -0.187 1.187 18 H -0.200 1.200 19 H -0.175 1.175 20 H 0.067 0.933 21 H 0.085 0.915 22 H 0.050 0.950 23 H 0.126 0.874 24 H 0.057 0.943 25 H 0.116 0.884 26 H 0.051 0.949 27 H 0.117 0.883 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.927 2.185 5.488 9.886 hybrid contribution -0.247 -0.605 -0.957 1.158 sum 7.680 1.580 4.532 9.056 Atomic orbital electron populations 1.21695 0.93104 1.01772 1.00065 1.21177 0.95505 0.96134 0.85817 0.90008 1.21928 0.81534 1.00612 0.98647 1.87575 1.21385 1.40255 1.78676 1.22616 0.99868 0.85847 0.93771 1.23265 1.00485 0.99857 0.96176 1.20693 0.81211 0.98200 0.99822 1.48092 1.06854 1.54661 1.28138 1.18528 0.84794 0.77809 0.84062 1.90576 1.19082 1.64338 1.75513 1.21508 0.97337 1.36052 1.05537 0.89703 1.26857 0.94247 0.94736 1.02379 1.70168 1.05265 1.32598 1.36847 0.85160 0.78834 0.78990 0.76237 1.18712 1.19954 1.17472 0.93306 0.91522 0.94963 0.87407 0.94256 0.88398 0.94923 0.88348 0.92079 0.92281 0.91990 0.91787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.56 7.64 71.98 0.55 -4.00 16 2 C 0.12 4.50 3.41 42.40 0.14 4.64 16 3 H 0.08 2.84 8.14 -2.38 -0.02 2.82 16 4 C 0.05 1.69 5.27 70.09 0.37 2.05 16 5 O -0.36 -11.74 10.24 -137.24 -1.41 -13.15 16 6 C 0.06 1.77 6.38 72.73 0.46 2.23 16 7 C -0.16 -5.04 6.74 31.95 0.22 -4.82 16 8 C 0.13 4.80 4.88 87.56 0.43 5.23 16 9 N -0.64 -29.21 2.59 -808.26 -2.09 -31.30 16 10 C 0.54 30.80 7.45 86.36 0.64 31.44 16 11 O -0.61 -38.59 10.80 -4.32 -0.05 -38.64 16 12 C -0.57 -31.80 8.77 24.83 0.22 -31.58 16 13 H 0.08 4.35 5.95 -2.91 -0.02 4.33 16 14 C 0.03 1.82 5.50 85.31 0.47 2.29 16 15 N -0.82 -49.45 11.83 21.84 0.26 -49.19 16 16 Si 0.99 40.91 29.56 68.60 2.03 42.94 16 17 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 18 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 19 H -0.25 -9.75 7.11 99.48 0.71 -9.04 16 20 H 0.05 2.35 6.47 -2.39 -0.02 2.33 16 21 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 22 H 0.03 1.55 7.10 -2.39 -0.02 1.53 16 23 H 0.11 2.90 8.14 -2.38 -0.02 2.88 16 24 H 0.04 1.47 6.67 -2.39 -0.02 1.46 16 25 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 26 H 0.03 1.17 6.66 -2.39 -0.02 1.16 16 27 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 28 H 0.06 2.07 8.14 -2.39 -0.02 2.06 16 29 H 0.06 2.38 5.84 -2.39 -0.01 2.37 16 30 H 0.06 2.12 7.99 -2.39 -0.02 2.10 16 31 H 0.27 14.99 8.29 -92.71 -0.77 14.22 16 Total: -1.00 -69.99 246.20 3.36 -66.63 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: 1.12 Total: 15.23 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: 3.50 Total: 7.48 kcal Atomic # 7 Polarization: -78.65 SS G_CDS: -1.84 Total: -80.49 kcal Atomic # 8 Polarization: -50.33 SS G_CDS: -1.45 Total: -51.78 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 2.03 Total: 42.94 kcal Total: -69.99 3.36 -66.63 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306286052.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.071 kcal (2) G-P(sol) polarization free energy of solvation -69.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds