Wall clock time and date at job start Sun Mar 29 2020 22:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46962 * 2 1 4 4 C 1.53002 * 109.46938 * 119.99857 * 2 1 3 5 5 C 1.52995 * 110.91669 * 299.44541 * 4 2 1 6 6 O 1.42905 * 109.47178 * 183.20413 * 5 4 2 7 7 C 1.55161 * 111.00331 * 63.35041 * 4 2 1 8 8 C 1.54324 * 102.94236 * 153.57371 * 7 4 2 9 9 N 1.47022 * 107.26921 * 337.80621 * 8 7 4 10 10 C 1.36934 * 125.64361 * 178.92377 * 9 8 7 11 11 H 1.08010 * 119.99627 * 180.02562 * 10 9 8 12 12 C 1.38806 * 120.00353 * 0.02562 * 10 9 8 13 13 N 1.31614 * 120.00034 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 120.00255 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.46928 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47199 * 119.99990 * 14 12 10 17 17 H 1.48496 * 109.47535 * 240.00139 * 14 12 10 18 18 C 1.47424 * 108.70692 * 358.93832 * 9 8 7 19 19 H 1.09000 * 109.47150 * 299.99725 * 1 2 3 20 20 H 1.08996 * 109.47334 * 59.99509 * 1 2 3 21 21 H 1.09001 * 109.47387 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47150 * 240.00275 * 2 1 3 23 23 H 1.09007 * 109.47234 * 54.29677 * 3 2 1 24 24 H 1.09007 * 109.47111 * 174.29310 * 3 2 1 25 25 H 1.08996 * 109.47522 * 294.29588 * 3 2 1 26 26 H 1.09002 * 109.47076 * 303.19801 * 5 4 2 27 27 H 1.09000 * 109.47667 * 63.20297 * 5 4 2 28 28 H 0.96697 * 114.00604 * 179.97438 * 6 5 4 29 29 H 1.09002 * 110.71288 * 271.93896 * 7 4 2 30 30 H 1.09002 * 110.72050 * 35.02965 * 7 4 2 31 31 H 1.09001 * 109.88030 * 97.22019 * 8 7 4 32 32 H 1.08996 * 109.87905 * 218.23388 * 8 7 4 33 33 H 0.97001 * 120.00234 * 180.02562 * 13 12 10 34 34 H 1.09001 * 110.36725 * 265.29605 * 18 9 8 35 35 H 1.09004 * 110.36518 * 142.96680 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5596 -0.0180 2.5203 6 8 2.1133 -0.6712 3.6644 7 6 1.6128 -2.2129 1.2436 8 6 2.7049 -2.8884 2.0995 9 7 3.8834 -2.0097 2.0763 10 6 5.0632 -2.2396 2.7322 11 1 5.8730 -1.5294 2.6517 12 6 5.2184 -3.3851 3.5005 13 7 4.2318 -4.2507 3.5982 14 14 6.8277 -3.6983 4.3960 15 1 7.7695 -2.5822 4.1263 16 1 6.5724 -3.7881 5.8561 17 1 7.4203 -4.9732 3.9178 18 6 3.5844 -0.8400 1.2302 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3634 -1.0277 0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.5956 1.9850 0.8346 24 1 3.1252 1.4442 0.1022 25 1 1.7625 1.9260 -0.9366 26 1 1.8833 1.0227 2.5041 27 1 0.4715 -0.0594 2.5695 28 1 1.8509 -0.2774 4.5076 29 1 0.6320 -2.3348 1.7034 30 1 1.6134 -2.6104 0.2287 31 1 2.3519 -3.0082 3.1238 32 1 2.9568 -3.8616 1.6781 33 1 4.3401 -5.0511 4.1354 34 1 3.9395 -1.0067 0.2132 35 1 4.0391 0.0576 1.6494 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306389465.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:05 Heat of formation + Delta-G solvation = -30.764469 kcal Electronic energy + Delta-G solvation = -15563.816198 eV Core-core repulsion = 13176.450563 eV Total energy + Delta-G solvation = -2387.365635 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.99023 -35.12592 -34.66354 -31.68045 -29.11239 -27.94197 -26.71952 -25.19267 -23.82600 -21.19772 -19.79220 -17.89001 -16.92844 -16.45037 -14.82836 -14.40578 -14.31153 -13.94044 -13.72817 -12.93872 -12.75988 -12.27591 -11.94641 -11.77275 -11.60615 -11.40131 -11.13501 -10.93519 -10.73706 -10.57653 -10.28679 -9.93249 -9.85521 -9.53282 -9.44769 -9.32935 -9.12098 -8.33806 -6.51126 -5.47374 -2.76488 3.51298 3.56180 3.58786 4.66968 4.83436 5.07636 5.09298 5.36021 5.53825 5.68690 5.76763 5.79114 5.81943 5.85988 5.95755 6.03122 6.14771 6.18411 6.24545 6.32905 6.46943 6.54311 6.57578 6.76175 6.82022 6.99164 7.03526 7.78772 7.95711 8.15438 8.42630 8.54053 9.47351 10.08921 10.77686 11.64726 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.050375 B = 0.009268 C = 0.009033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.699675 B = 3020.539065 C = 3098.961023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.078 4.078 3 C -0.148 4.148 4 C -0.073 4.073 5 C 0.097 3.903 6 O -0.527 6.527 7 C -0.129 4.129 8 C 0.190 3.810 9 N -0.589 5.589 10 C -0.209 4.209 11 H 0.072 0.928 12 C -0.013 4.013 13 N -0.921 5.921 14 Si 0.905 3.095 15 H -0.283 1.283 16 H -0.293 1.293 17 H -0.294 1.294 18 C 0.156 3.844 19 H 0.052 0.948 20 H 0.048 0.952 21 H 0.056 0.944 22 H 0.072 0.928 23 H 0.052 0.948 24 H 0.059 0.941 25 H 0.048 0.952 26 H 0.033 0.967 27 H 0.031 0.969 28 H 0.356 0.644 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.030 0.970 33 H 0.246 0.754 34 H 0.011 0.989 35 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.923 9.414 -4.987 13.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.097 4.097 3 C -0.205 4.205 4 C -0.074 4.074 5 C 0.019 3.981 6 O -0.328 6.328 7 C -0.167 4.167 8 C 0.065 3.935 9 N -0.314 5.314 10 C -0.338 4.338 11 H 0.090 0.910 12 C -0.208 4.208 13 N -0.570 5.570 14 Si 0.737 3.263 15 H -0.208 1.208 16 H -0.221 1.221 17 H -0.221 1.221 18 C 0.030 3.970 19 H 0.071 0.929 20 H 0.067 0.933 21 H 0.075 0.925 22 H 0.091 0.909 23 H 0.071 0.929 24 H 0.078 0.922 25 H 0.067 0.933 26 H 0.051 0.949 27 H 0.049 0.951 28 H 0.200 0.800 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.048 0.952 33 H 0.057 0.943 34 H 0.029 0.971 35 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -7.544 8.866 -5.318 12.798 hybrid contribution 0.519 0.191 0.950 1.099 sum -7.024 9.057 -4.368 12.266 Atomic orbital electron populations 1.21880 0.95707 1.01802 1.00975 1.21008 0.95217 0.95824 0.97647 1.21905 1.01648 0.96114 1.00869 1.21796 0.97997 0.95448 0.92128 1.21972 0.94882 0.94142 0.87096 1.87070 1.73882 1.57408 1.14440 1.22891 0.99838 0.94185 0.99824 1.20990 0.83825 0.91323 0.97313 1.44214 1.12394 1.19954 1.54865 1.19027 0.89706 1.03596 1.21468 0.91025 1.24707 0.97582 0.97589 1.00925 1.69995 1.30364 1.12241 1.44447 0.86126 0.83239 0.77462 0.79469 1.20803 1.22089 1.22119 1.21411 0.90677 0.91349 0.93580 0.92911 0.93278 0.92452 0.90923 0.92923 0.92226 0.93273 0.94909 0.95123 0.80007 0.92829 0.93097 0.92864 0.95223 0.94302 0.97143 0.95052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 8.69 37.16 0.32 -1.46 16 2 C -0.08 -1.11 2.20 -90.62 -0.20 -1.31 16 3 C -0.15 -1.87 8.59 37.16 0.32 -1.55 16 4 C -0.07 -1.31 0.35 -152.36 -0.05 -1.36 16 5 C 0.10 1.65 5.38 37.16 0.20 1.85 16 6 O -0.53 -10.71 10.61 -35.23 -0.37 -11.08 16 7 C -0.13 -2.60 4.89 -24.89 -0.12 -2.73 16 8 C 0.19 4.96 4.43 -3.06 -0.01 4.95 16 9 N -0.59 -15.94 2.63 -170.07 -0.45 -16.39 16 10 C -0.21 -6.16 10.28 -15.06 -0.15 -6.32 16 11 H 0.07 2.06 7.83 -52.48 -0.41 1.65 16 12 C -0.01 -0.38 5.49 -17.43 -0.10 -0.47 16 13 N -0.92 -28.54 10.31 55.49 0.57 -27.97 16 14 Si 0.91 23.22 29.55 -169.99 -5.02 18.20 16 15 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 16 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 17 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 18 C 0.16 3.46 5.05 -2.53 -0.01 3.45 16 19 H 0.05 0.62 6.64 -51.93 -0.34 0.27 16 20 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 21 H 0.06 0.72 7.39 -51.93 -0.38 0.34 16 22 H 0.07 1.06 8.13 -51.93 -0.42 0.64 16 23 H 0.05 0.63 6.79 -51.93 -0.35 0.28 16 24 H 0.06 0.81 7.12 -51.93 -0.37 0.44 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.03 0.51 6.54 -51.93 -0.34 0.17 16 27 H 0.03 0.46 6.76 -51.93 -0.35 0.11 16 28 H 0.36 5.52 9.12 45.56 0.42 5.94 16 29 H 0.05 1.01 8.02 -51.93 -0.42 0.59 16 30 H 0.05 0.97 8.04 -51.93 -0.42 0.55 16 31 H 0.05 1.55 6.68 -51.93 -0.35 1.20 16 32 H 0.03 0.86 7.50 -51.93 -0.39 0.47 16 33 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 34 H 0.01 0.24 8.03 -51.93 -0.42 -0.17 16 35 H 0.03 0.70 7.84 -51.93 -0.41 0.29 16 LS Contribution 266.79 15.07 4.02 4.02 Total: -1.00 -33.10 266.79 -5.99 -39.10 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -4.93 Total: -0.92 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: 0.19 Total: -4.97 kcal Atomic # 7 Polarization: -44.48 SS G_CDS: 0.12 Total: -44.36 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: -0.37 Total: -11.08 kcal Atomic # 14 Polarization: 23.22 SS G_CDS: -5.02 Total: 18.20 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -33.10 -5.99 -39.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306389465.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.332 kcal (2) G-P(sol) polarization free energy of solvation -33.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds