Wall clock time and date at job start Sun Mar 29 2020 22:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46962 * 2 1 4 4 C 1.53002 * 109.46938 * 119.99857 * 2 1 3 5 5 C 1.52995 * 110.91669 * 299.44541 * 4 2 1 6 6 O 1.42905 * 109.47178 * 183.20413 * 5 4 2 7 7 C 1.55161 * 111.00331 * 63.35041 * 4 2 1 8 8 C 1.54324 * 102.94236 * 153.57371 * 7 4 2 9 9 N 1.47022 * 107.26921 * 337.80621 * 8 7 4 10 10 C 1.36934 * 125.64361 * 178.92377 * 9 8 7 11 11 H 1.08010 * 119.99627 * 180.02562 * 10 9 8 12 12 C 1.38806 * 120.00353 * 0.02562 * 10 9 8 13 13 N 1.31614 * 120.00034 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 120.00255 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.46928 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47199 * 119.99990 * 14 12 10 17 17 H 1.48496 * 109.47535 * 240.00139 * 14 12 10 18 18 C 1.47424 * 108.70692 * 358.93832 * 9 8 7 19 19 H 1.09000 * 109.47150 * 299.99725 * 1 2 3 20 20 H 1.08996 * 109.47334 * 59.99509 * 1 2 3 21 21 H 1.09001 * 109.47387 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47150 * 240.00275 * 2 1 3 23 23 H 1.09007 * 109.47234 * 54.29677 * 3 2 1 24 24 H 1.09007 * 109.47111 * 174.29310 * 3 2 1 25 25 H 1.08996 * 109.47522 * 294.29588 * 3 2 1 26 26 H 1.09002 * 109.47076 * 303.19801 * 5 4 2 27 27 H 1.09000 * 109.47667 * 63.20297 * 5 4 2 28 28 H 0.96697 * 114.00604 * 179.97438 * 6 5 4 29 29 H 1.09002 * 110.71288 * 271.93896 * 7 4 2 30 30 H 1.09002 * 110.72050 * 35.02965 * 7 4 2 31 31 H 1.09001 * 109.88030 * 97.22019 * 8 7 4 32 32 H 1.08996 * 109.87905 * 218.23388 * 8 7 4 33 33 H 0.97001 * 120.00234 * 180.02562 * 13 12 10 34 34 H 1.09001 * 110.36725 * 265.29605 * 18 9 8 35 35 H 1.09004 * 110.36518 * 142.96680 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5596 -0.0180 2.5203 6 8 2.1133 -0.6712 3.6644 7 6 1.6128 -2.2129 1.2436 8 6 2.7049 -2.8884 2.0995 9 7 3.8834 -2.0097 2.0763 10 6 5.0632 -2.2396 2.7322 11 1 5.8730 -1.5294 2.6517 12 6 5.2184 -3.3851 3.5005 13 7 4.2318 -4.2507 3.5982 14 14 6.8277 -3.6983 4.3960 15 1 7.7695 -2.5822 4.1263 16 1 6.5724 -3.7881 5.8561 17 1 7.4203 -4.9732 3.9178 18 6 3.5844 -0.8400 1.2302 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3634 -1.0277 0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.5956 1.9850 0.8346 24 1 3.1252 1.4442 0.1022 25 1 1.7625 1.9260 -0.9366 26 1 1.8833 1.0227 2.5041 27 1 0.4715 -0.0594 2.5695 28 1 1.8509 -0.2774 4.5076 29 1 0.6320 -2.3348 1.7034 30 1 1.6134 -2.6104 0.2287 31 1 2.3519 -3.0082 3.1238 32 1 2.9568 -3.8616 1.6781 33 1 4.3401 -5.0511 4.1354 34 1 3.9395 -1.0067 0.2132 35 1 4.0391 0.0576 1.6494 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306389465.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:05 Heat of formation + Delta-G solvation = -54.166071 kcal Electronic energy + Delta-G solvation = -15564.830967 eV Core-core repulsion = 13176.450563 eV Total energy + Delta-G solvation = -2388.380405 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.51768 -36.75928 -36.20722 -33.66480 -30.98773 -29.47618 -27.93175 -26.89855 -25.63002 -22.58168 -21.79663 -19.37971 -18.61959 -18.22465 -16.73467 -16.18470 -15.72317 -15.59025 -15.19572 -14.33465 -14.00670 -13.86253 -13.65007 -13.36644 -13.04062 -12.90044 -12.85122 -12.67642 -12.35460 -12.20915 -11.89756 -11.74080 -11.61801 -11.26036 -11.04470 -10.91797 -10.68659 -10.43177 -8.70320 -7.73490 -5.04707 1.44835 1.46847 1.56657 2.55337 3.42602 3.51042 3.67335 3.85529 4.06136 4.23239 4.37973 4.43472 4.48412 4.62284 4.70289 4.80430 4.82871 4.91841 5.00975 5.09145 5.10932 5.15726 5.24862 5.28603 5.44016 5.51119 5.56530 5.58899 5.82091 5.99581 6.33300 7.18731 7.22699 7.92924 8.59164 9.37472 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.050375 B = 0.009268 C = 0.009033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.699675 B = 3020.539065 C = 3098.961023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.073 4.073 3 C -0.145 4.145 4 C -0.061 4.061 5 C 0.094 3.906 6 O -0.568 6.568 7 C -0.118 4.118 8 C 0.201 3.799 9 N -0.608 5.608 10 C -0.224 4.224 11 H 0.073 0.927 12 C -0.072 4.072 13 N -0.951 5.951 14 Si 0.974 3.026 15 H -0.268 1.268 16 H -0.294 1.294 17 H -0.294 1.294 18 C 0.151 3.849 19 H 0.060 0.940 20 H 0.071 0.929 21 H 0.051 0.949 22 H 0.069 0.931 23 H 0.062 0.938 24 H 0.044 0.956 25 H 0.072 0.928 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.373 0.627 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.016 0.984 32 H -0.014 1.014 33 H 0.241 0.759 34 H 0.011 0.989 35 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.734 11.340 -5.757 15.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.092 4.092 3 C -0.203 4.203 4 C -0.062 4.062 5 C 0.017 3.983 6 O -0.372 6.372 7 C -0.156 4.156 8 C 0.076 3.924 9 N -0.333 5.333 10 C -0.354 4.354 11 H 0.091 0.909 12 C -0.264 4.264 13 N -0.602 5.602 14 Si 0.804 3.196 15 H -0.192 1.192 16 H -0.221 1.221 17 H -0.221 1.221 18 C 0.025 3.975 19 H 0.079 0.921 20 H 0.090 0.910 21 H 0.070 0.930 22 H 0.087 0.913 23 H 0.081 0.919 24 H 0.063 0.937 25 H 0.091 0.909 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.220 0.780 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.034 0.966 32 H 0.004 0.996 33 H 0.050 0.950 34 H 0.029 0.971 35 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -8.364 10.836 -6.105 14.988 hybrid contribution 0.783 -0.384 1.163 1.454 sum -7.581 10.453 -4.942 13.826 Atomic orbital electron populations 1.21854 0.93544 1.02011 1.02575 1.20990 0.96920 0.96306 0.95027 1.21884 1.00673 0.95066 1.02632 1.21825 0.94648 0.94613 0.95088 1.22143 0.96281 0.94524 0.85362 1.87019 1.74930 1.58964 1.16315 1.22743 0.98296 0.95370 0.99164 1.20678 0.85382 0.90286 0.96037 1.44481 1.11985 1.21718 1.55109 1.19397 0.90880 1.03628 1.21487 0.90886 1.25560 1.01096 0.97575 1.02197 1.70240 1.32332 1.12456 1.45159 0.85054 0.79425 0.77411 0.77743 1.19230 1.22102 1.22141 1.21604 0.94060 0.89417 0.92373 0.92061 0.90998 0.92975 0.91282 0.91922 0.93725 0.90932 0.92984 0.92465 0.78037 0.91177 0.92001 0.96603 0.99637 0.94973 0.97099 0.95238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 8.69 71.98 0.63 -2.25 16 2 C -0.07 -1.86 2.20 -10.79 -0.02 -1.88 16 3 C -0.15 -3.14 8.59 71.98 0.62 -2.52 16 4 C -0.06 -2.08 0.35 -50.79 -0.02 -2.10 16 5 C 0.09 2.97 5.38 71.98 0.39 3.35 16 6 O -0.57 -22.79 10.61 -148.98 -1.58 -24.38 16 7 C -0.12 -4.66 4.89 31.78 0.16 -4.50 16 8 C 0.20 10.85 4.43 86.73 0.38 11.23 16 9 N -0.61 -33.58 2.63 -691.97 -1.82 -35.40 16 10 C -0.22 -13.49 10.28 84.03 0.86 -12.63 16 11 H 0.07 4.25 7.83 -2.91 -0.02 4.22 16 12 C -0.07 -4.39 5.49 84.86 0.47 -3.92 16 13 N -0.95 -61.12 10.31 21.65 0.22 -60.89 16 14 Si 0.97 48.68 29.55 68.60 2.03 50.71 16 15 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 16 H -0.29 -14.59 7.11 99.48 0.71 -13.89 16 17 H -0.29 -14.61 7.11 99.48 0.71 -13.90 16 18 C 0.15 6.61 5.05 86.86 0.44 7.05 16 19 H 0.06 1.14 6.64 -2.39 -0.02 1.13 16 20 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 21 H 0.05 1.11 7.39 -2.39 -0.02 1.10 16 22 H 0.07 1.81 8.13 -2.39 -0.02 1.79 16 23 H 0.06 1.23 6.79 -2.38 -0.02 1.22 16 24 H 0.04 1.09 7.12 -2.38 -0.02 1.08 16 25 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.05 1.44 6.54 -2.39 -0.02 1.43 16 27 H 0.06 1.52 6.76 -2.39 -0.02 1.50 16 28 H 0.37 11.35 9.12 -74.06 -0.68 10.68 16 29 H 0.07 2.54 8.02 -2.39 -0.02 2.52 16 30 H 0.06 2.29 8.04 -2.39 -0.02 2.28 16 31 H 0.02 0.96 6.68 -2.39 -0.02 0.94 16 32 H -0.01 -0.89 7.50 -2.39 -0.02 -0.91 16 33 H 0.24 15.02 8.31 -92.71 -0.77 14.25 16 34 H 0.01 0.49 8.03 -2.39 -0.02 0.47 16 35 H 0.03 1.29 7.84 -2.38 -0.02 1.27 16 Total: -1.00 -73.58 266.79 3.13 -70.45 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: 0.39 Total: 7.67 kcal Atomic # 6 Polarization: -12.06 SS G_CDS: 3.90 Total: -8.16 kcal Atomic # 7 Polarization: -94.70 SS G_CDS: -1.60 Total: -96.29 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: -1.58 Total: -24.38 kcal Atomic # 14 Polarization: 48.68 SS G_CDS: 2.03 Total: 50.71 kcal Total: -73.58 3.13 -70.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306389465.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.285 kcal (2) G-P(sol) polarization free energy of solvation -73.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds