Wall clock time and date at job start Sun Mar 29 2020 22:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 119.99886 * 2 1 4 4 H 1.48499 * 109.47036 * 269.99547 * 3 2 1 5 5 H 1.48498 * 109.47280 * 29.99748 * 3 2 1 6 6 H 1.48500 * 109.47289 * 149.99669 * 3 2 1 7 7 C 1.37881 * 120.00294 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00074 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99643 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.46885 * 179.97438 * 9 7 2 11 11 N 1.46902 * 109.46847 * 185.07768 * 10 9 7 12 12 C 1.48200 * 110.82848 * 155.69455 * 11 10 9 13 13 C 1.50446 * 112.72099 * 85.10839 * 12 11 10 14 14 C 1.54310 * 108.66391 * 93.49800 * 13 12 11 15 15 C 1.45883 * 112.18173 * 281.38229 * 14 13 12 16 16 H 1.09005 * 108.93534 * 300.41880 * 15 14 13 17 17 O 1.42895 * 108.93892 * 181.82026 * 15 14 13 18 18 C 1.54303 * 112.19252 * 61.11564 * 15 14 13 19 19 C 1.48000 * 110.99834 * 284.46240 * 11 10 9 20 20 H 0.97005 * 120.00203 * 0.02562 * 1 2 3 21 21 H 1.08999 * 109.47133 * 59.99500 * 9 7 2 22 22 H 1.09003 * 109.47039 * 299.99851 * 9 7 2 23 23 H 1.09000 * 109.46916 * 65.07582 * 10 9 7 24 24 H 1.08996 * 109.46861 * 305.07599 * 10 9 7 25 25 H 1.09005 * 109.13034 * 324.09272 * 12 11 10 26 26 H 1.09006 * 108.60939 * 205.76628 * 12 11 10 27 27 H 1.08994 * 109.62928 * 333.69438 * 13 12 11 28 28 H 1.08996 * 109.63142 * 213.30031 * 13 12 11 29 29 H 1.08996 * 108.94276 * 42.07603 * 14 13 12 30 30 H 1.09003 * 108.93797 * 160.77705 * 14 13 12 31 31 H 0.96705 * 113.99809 * 60.00187 * 17 15 14 32 32 H 1.09004 * 109.63176 * 41.15971 * 18 15 14 33 33 H 1.09007 * 109.63216 * 161.75103 * 18 15 14 34 34 H 1.08999 * 108.81789 * 70.48686 * 19 11 10 35 35 H 1.09004 * 108.81261 * 312.20865 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 7 1.5150 -4.9307 -0.1220 12 6 2.3833 -5.9853 -0.6967 13 6 3.2206 -6.6790 0.3431 14 6 2.4705 -7.9403 0.8202 15 6 1.4120 -7.6242 1.7730 16 1 1.8519 -7.1301 2.6393 17 8 0.7938 -8.8398 2.1996 18 6 0.3355 -6.7019 1.1636 19 6 0.8628 -5.2929 1.1562 20 1 -0.4851 0.8401 -0.0004 21 1 0.6247 -2.5570 -0.8896 22 1 0.6241 -2.5567 0.8903 23 1 2.8106 -3.6568 0.9325 24 1 2.9303 -3.5544 -0.8405 25 1 3.0443 -5.5384 -1.4394 26 1 1.7524 -6.7245 -1.1905 27 1 3.3850 -6.0094 1.1872 28 1 4.1792 -6.9648 -0.0898 29 1 2.0313 -8.4388 -0.0439 30 1 3.1816 -8.6165 1.2947 31 1 1.3987 -9.4579 2.6324 32 1 0.1184 -7.0170 0.1429 33 1 -0.5718 -6.7503 1.7657 34 1 0.0349 -4.6068 1.3352 35 1 1.5871 -5.1844 1.9635 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306394365.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:50 Heat of formation + Delta-G solvation = -61.321895 kcal Electronic energy + Delta-G solvation = -14701.066290 eV Core-core repulsion = 12312.375586 eV Total energy + Delta-G solvation = -2388.690705 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.49806 -36.65610 -33.76812 -32.44858 -31.70315 -29.43077 -26.08000 -24.53841 -23.75085 -21.06870 -20.41335 -19.14404 -17.52515 -16.39896 -15.92025 -14.85366 -14.62586 -14.37240 -14.21350 -13.61624 -13.06720 -12.95113 -12.17953 -12.07340 -11.83893 -11.63275 -11.45656 -11.02525 -10.91913 -10.82705 -10.60463 -10.49463 -10.32181 -9.94409 -9.73010 -9.34372 -9.07065 -8.29983 -7.55967 -5.96231 -3.98655 3.33772 3.39834 3.42748 4.10132 4.34559 4.52667 4.72379 4.81841 5.00385 5.26003 5.34341 5.39565 5.55420 5.59933 5.74727 5.87369 5.89262 5.99076 6.02279 6.14023 6.31026 6.31885 6.39499 6.51386 6.58303 7.04865 7.54964 7.56209 7.64509 7.84132 7.97404 8.14228 8.47520 9.09133 9.64775 11.15142 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.060555 B = 0.006050 C = 0.005761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.280719 B = 4627.093912 C = 4859.088675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.891 3.109 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.522 4.522 8 H 0.053 0.947 9 C 0.029 3.971 10 C 0.067 3.933 11 N -0.549 5.549 12 C 0.056 3.944 13 C -0.145 4.145 14 C -0.149 4.149 15 C 0.105 3.895 16 H 0.047 0.953 17 O -0.572 6.572 18 C -0.110 4.110 19 C 0.067 3.933 20 H 0.260 0.740 21 H 0.025 0.975 22 H 0.014 0.986 23 H 0.018 0.982 24 H 0.059 0.941 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.057 0.943 31 H 0.372 0.628 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.757 -15.064 2.579 16.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.561 4.561 8 H 0.071 0.929 9 C -0.009 4.009 10 C -0.060 4.060 11 N -0.273 5.273 12 C -0.072 4.072 13 C -0.184 4.184 14 C -0.186 4.186 15 C 0.046 3.954 16 H 0.065 0.935 17 O -0.377 6.377 18 C -0.148 4.148 19 C -0.060 4.060 20 H 0.070 0.930 21 H 0.043 0.957 22 H 0.032 0.968 23 H 0.037 0.963 24 H 0.077 0.923 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.218 0.782 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 3.712 -14.590 2.009 15.188 hybrid contribution 1.711 0.568 0.844 1.990 sum 5.423 -14.022 2.852 15.302 Atomic orbital electron populations 1.69975 1.06016 1.26508 1.50729 1.24991 0.94811 0.99120 0.95375 0.86613 0.79793 0.83595 0.78087 1.20658 1.21245 1.19983 1.21213 0.92925 0.91174 1.50769 0.92899 1.19070 0.94021 0.90009 0.97757 1.22385 0.96607 0.88538 0.98477 1.62035 1.33856 1.03528 1.27926 1.21989 0.94452 0.94472 0.96295 1.21851 0.99122 0.96790 1.00686 1.21295 0.97927 0.98590 1.00817 1.20916 0.93408 0.85236 0.95800 0.93467 1.86569 1.40585 1.30158 1.80428 1.21386 0.97665 0.93627 1.02092 1.21656 0.98991 0.95203 0.90188 0.93030 0.95661 0.96756 0.96331 0.92276 0.91381 0.91606 0.91584 0.91441 0.91027 0.92437 0.78197 0.90249 0.90417 0.89905 0.95349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.19 13.29 55.43 0.74 -26.45 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.52 -14.94 9.11 -34.44 -0.31 -15.26 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 9 C 0.03 0.77 5.00 -27.88 -0.14 0.63 16 10 C 0.07 1.42 4.89 -3.82 -0.02 1.40 16 11 N -0.55 -10.02 4.61 -235.72 -1.09 -11.10 16 12 C 0.06 0.82 5.17 -4.38 -0.02 0.80 16 13 C -0.15 -1.80 5.58 -27.32 -0.15 -1.96 16 14 C -0.15 -1.65 4.81 -29.41 -0.14 -1.79 16 15 C 0.10 1.29 2.97 -29.42 -0.09 1.20 16 16 H 0.05 0.58 7.52 -51.93 -0.39 0.19 16 17 O -0.57 -6.74 13.25 -35.23 -0.47 -7.21 16 18 C -0.11 -1.57 5.27 -27.33 -0.14 -1.71 16 19 C 0.07 1.12 4.69 -4.49 -0.02 1.10 16 20 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 21 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 22 H 0.01 0.40 7.35 -51.93 -0.38 0.01 16 23 H 0.02 0.39 7.78 -51.93 -0.40 -0.01 16 24 H 0.06 1.24 7.45 -51.93 -0.39 0.85 16 25 H 0.07 0.99 7.45 -51.93 -0.39 0.61 16 26 H 0.07 0.92 6.61 -51.93 -0.34 0.58 16 27 H 0.07 0.91 7.00 -51.93 -0.36 0.55 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.07 0.81 7.53 -51.93 -0.39 0.42 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.37 2.72 9.05 45.56 0.41 3.13 16 32 H 0.08 1.17 7.09 -51.93 -0.37 0.80 16 33 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.08 1.54 7.39 -51.93 -0.38 1.15 16 35 H 0.03 0.47 6.25 -51.93 -0.32 0.15 16 LS Contribution 272.02 15.07 4.10 4.10 Total: -1.00 -31.14 272.02 -7.82 -38.96 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: -4.94 Total: -1.09 kcal Atomic # 6 Polarization: -12.85 SS G_CDS: -1.14 Total: -13.99 kcal Atomic # 7 Polarization: -37.20 SS G_CDS: -0.35 Total: -37.56 kcal Atomic # 8 Polarization: -6.74 SS G_CDS: -0.47 Total: -7.21 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -31.14 -7.82 -38.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306394365.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.359 kcal (2) G-P(sol) polarization free energy of solvation -31.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds