Wall clock time and date at job start Sun Mar 29 2020 21:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.99843 * 2 1 4 4 C 1.54333 * 109.99108 * 238.96282 * 2 1 3 5 5 H 1.09000 * 110.67187 * 337.04380 * 4 2 1 6 6 C 1.52998 * 110.85454 * 100.19670 * 4 2 1 7 7 O 1.42901 * 109.47539 * 180.14252 * 6 4 2 8 8 C 1.55157 * 103.02064 * 218.66520 * 4 2 1 9 9 C 1.54913 * 101.58216 * 35.30878 * 8 4 2 10 10 N 1.47017 * 109.88243 * 121.09422 * 2 1 3 11 11 C 1.34777 * 125.64827 * 298.39792 * 10 2 1 12 12 O 1.21682 * 119.99992 * 359.71157 * 11 10 2 13 13 C 1.46376 * 119.99803 * 179.71778 * 11 10 2 14 14 H 1.07995 * 120.00124 * 359.71785 * 13 11 10 15 15 C 1.40050 * 119.99863 * 180.02562 * 13 11 10 16 16 N 1.30676 * 119.99974 * 359.97438 * 15 13 11 17 17 Si 1.86800 * 120.00158 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47118 * 89.99406 * 17 15 13 19 19 H 1.48499 * 109.47134 * 209.99926 * 17 15 13 20 20 H 1.48498 * 109.47011 * 329.99547 * 17 15 13 21 21 H 1.08998 * 109.47022 * 300.35903 * 1 2 3 22 22 H 1.09004 * 109.46937 * 60.36174 * 1 2 3 23 23 H 1.08996 * 109.47289 * 180.35732 * 1 2 3 24 24 H 1.08997 * 109.47317 * 300.15017 * 6 4 2 25 25 H 1.09003 * 109.46900 * 60.14576 * 6 4 2 26 26 H 0.96697 * 113.99677 * 180.02562 * 7 6 4 27 27 H 1.08994 * 111.00628 * 277.23022 * 8 4 2 28 28 H 1.08999 * 111.00615 * 153.37906 * 8 4 2 29 29 H 1.08997 * 110.36961 * 204.15549 * 9 8 4 30 30 H 1.08996 * 110.37146 * 81.82697 * 9 8 4 31 31 H 0.96996 * 119.99793 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0576 -0.7478 -1.2427 5 1 1.3067 -1.4406 -1.6225 6 6 2.4817 0.2386 -2.3326 7 8 2.9613 -0.4837 -3.4686 8 6 3.2863 -1.5183 -0.6915 9 6 2.8099 -1.8826 0.7369 10 7 2.0300 -0.7140 1.1839 11 6 1.8073 -0.3620 2.4657 12 8 1.1453 0.6271 2.7187 13 6 2.3620 -1.1694 3.5533 14 1 2.9458 -2.0498 3.3287 15 6 2.1301 -0.8040 4.8852 16 7 1.4191 0.2582 5.1570 17 14 2.8374 -1.8347 6.2733 18 1 4.1867 -1.3270 6.6290 19 1 1.9470 -1.7467 7.4585 20 1 2.9405 -3.2501 5.8358 21 1 -0.3633 0.5194 0.8867 22 1 -0.3633 0.5082 -0.8932 23 1 -0.3633 -1.0276 0.0064 24 1 1.6262 0.8479 -2.6241 25 1 3.2736 0.8832 -1.9512 26 1 3.2485 0.0795 -4.2002 27 1 4.1669 -0.8769 -0.6579 28 1 3.4807 -2.4156 -1.2791 29 1 3.6655 -2.0412 1.3933 30 1 2.1801 -2.7718 0.7115 31 1 1.2588 0.5115 6.0795 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306439325.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:13 Heat of formation + Delta-G solvation = -94.197964 kcal Electronic energy + Delta-G solvation = -14646.975946 eV Core-core repulsion = 12121.026533 eV Total energy + Delta-G solvation = -2525.949412 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.00017 -36.76819 -35.38573 -32.49945 -31.23750 -30.43134 -27.05171 -25.91899 -23.31572 -21.88917 -20.14074 -18.79006 -17.10929 -16.50000 -15.70067 -15.34025 -14.58183 -14.18420 -13.46620 -13.31447 -13.03930 -12.51580 -12.39190 -12.01455 -11.55702 -11.42606 -11.20275 -10.86809 -10.78439 -10.61527 -10.35751 -10.29730 -10.15981 -10.03909 -9.79504 -8.84133 -7.58055 -7.16324 -6.18473 -4.62879 3.14500 3.21249 3.24791 4.05483 4.22548 4.56974 4.63806 4.98458 5.15458 5.30259 5.57120 5.59458 5.73143 5.82957 5.88527 6.00631 6.10078 6.15747 6.36395 6.39210 6.54228 6.71742 6.76938 7.00709 7.44615 7.45232 7.62906 8.14208 8.44993 9.03254 9.53239 10.59431 10.78677 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.053551 B = 0.008073 C = 0.007318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.743104 B = 3467.706419 C = 3825.285365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.150 3.850 3 H 0.057 0.943 4 C -0.098 4.098 5 H 0.084 0.916 6 C 0.087 3.913 7 O -0.573 6.573 8 C -0.122 4.122 9 C 0.116 3.884 10 N -0.641 5.641 11 C 0.573 3.427 12 O -0.574 6.574 13 C -0.540 4.540 14 H 0.069 0.931 15 C 0.087 3.913 16 N -0.769 5.769 17 Si 0.908 3.092 18 H -0.272 1.272 19 H -0.279 1.279 20 H -0.265 1.265 21 H 0.074 0.926 22 H 0.045 0.955 23 H 0.048 0.952 24 H 0.045 0.955 25 H 0.047 0.953 26 H 0.375 0.625 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.046 0.954 31 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.074 -2.389 -11.409 12.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.045 3.955 3 H 0.075 0.925 4 C -0.117 4.117 5 H 0.102 0.898 6 C 0.010 3.990 7 O -0.378 6.378 8 C -0.160 4.160 9 C -0.008 4.008 10 N -0.381 5.381 11 C 0.380 3.620 12 O -0.457 6.457 13 C -0.576 4.576 14 H 0.087 0.913 15 C -0.133 4.133 16 N -0.398 5.398 17 Si 0.732 3.268 18 H -0.197 1.197 19 H -0.204 1.204 20 H -0.189 1.189 21 H 0.093 0.907 22 H 0.064 0.936 23 H 0.068 0.932 24 H 0.063 0.937 25 H 0.065 0.935 26 H 0.221 0.779 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.064 0.936 31 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.450 -2.193 -10.621 11.119 hybrid contribution 0.481 -0.059 0.287 0.563 sum 2.931 -2.252 -10.334 10.975 Atomic orbital electron populations 1.22121 0.96024 1.01488 1.01842 1.21010 0.93698 0.95639 0.85109 0.92547 1.22257 0.98464 0.97434 0.93593 0.89795 1.22166 0.97310 0.93513 0.86056 1.86477 1.85990 1.37923 1.27407 1.22770 0.97012 1.00079 0.96157 1.21925 0.95463 0.89910 0.93548 1.48784 1.56422 1.28098 1.04773 1.17997 0.80256 0.84976 0.78804 1.90588 1.43842 1.29461 1.81795 1.20912 1.35187 1.11944 0.89592 0.91266 1.25726 0.93467 0.94501 0.99560 1.70023 1.29046 1.20988 1.19707 0.86372 0.79240 0.80804 0.80366 1.19726 1.20442 1.18884 0.90703 0.93620 0.93249 0.93656 0.93454 0.77925 0.91368 0.90873 0.91178 0.93577 0.92116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.02 9.11 37.16 0.34 -2.68 16 2 C 0.15 2.98 3.06 -66.95 -0.20 2.78 16 3 H 0.06 1.17 7.82 -51.93 -0.41 0.76 16 4 C -0.10 -1.55 2.76 -88.78 -0.24 -1.80 16 5 H 0.08 1.31 7.85 -51.93 -0.41 0.90 16 6 C 0.09 1.13 6.34 37.16 0.24 1.37 16 7 O -0.57 -6.89 13.51 -35.23 -0.48 -7.37 16 8 C -0.12 -1.93 6.39 -24.58 -0.16 -2.09 16 9 C 0.12 2.24 6.52 -2.52 -0.02 2.22 16 10 N -0.64 -15.08 3.06 -164.65 -0.50 -15.58 16 11 C 0.57 16.65 7.57 -12.99 -0.10 16.55 16 12 O -0.57 -18.70 14.06 5.21 0.07 -18.62 16 13 C -0.54 -15.46 8.98 -35.63 -0.32 -15.78 16 14 H 0.07 1.83 6.65 -52.49 -0.35 1.48 16 15 C 0.09 2.45 5.50 -17.36 -0.10 2.35 16 16 N -0.77 -23.20 11.83 55.55 0.66 -22.55 16 17 Si 0.91 20.32 29.56 -169.99 -5.02 15.29 16 18 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 19 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 20 H -0.26 -5.74 7.11 56.52 0.40 -5.34 16 21 H 0.07 1.72 6.89 -51.93 -0.36 1.36 16 22 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.05 0.60 8.10 -51.93 -0.42 0.18 16 26 H 0.37 2.64 9.12 45.56 0.42 3.06 16 27 H 0.07 1.06 8.02 -51.93 -0.42 0.65 16 28 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.07 1.36 7.15 -51.93 -0.37 0.99 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.27 7.33 8.29 -40.82 -0.34 6.99 16 LS Contribution 260.16 15.07 3.92 3.92 Total: -1.00 -34.75 260.16 -5.48 -40.23 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -3.56 Total: 1.76 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: -0.56 Total: 2.92 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: 0.15 Total: -38.13 kcal Atomic # 8 Polarization: -25.59 SS G_CDS: -0.40 Total: -25.99 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -34.75 -5.48 -40.23 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306439325.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.972 kcal (2) G-P(sol) polarization free energy of solvation -34.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds