Wall clock time and date at job start Sun Mar 29 2020 21:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.99843 * 2 1 4 4 C 1.54333 * 109.99108 * 238.96282 * 2 1 3 5 5 H 1.09000 * 110.67187 * 337.04380 * 4 2 1 6 6 C 1.52998 * 110.85454 * 100.19670 * 4 2 1 7 7 O 1.42901 * 109.47539 * 180.14252 * 6 4 2 8 8 C 1.55157 * 103.02064 * 218.66520 * 4 2 1 9 9 C 1.54913 * 101.58216 * 35.30878 * 8 4 2 10 10 N 1.47017 * 109.88243 * 121.09422 * 2 1 3 11 11 C 1.34777 * 125.64827 * 298.39792 * 10 2 1 12 12 O 1.21682 * 119.99992 * 359.71157 * 11 10 2 13 13 C 1.46376 * 119.99803 * 179.71778 * 11 10 2 14 14 H 1.07995 * 120.00124 * 359.71785 * 13 11 10 15 15 C 1.40050 * 119.99863 * 180.02562 * 13 11 10 16 16 N 1.30676 * 119.99974 * 359.97438 * 15 13 11 17 17 Si 1.86800 * 120.00158 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47118 * 89.99406 * 17 15 13 19 19 H 1.48499 * 109.47134 * 209.99926 * 17 15 13 20 20 H 1.48498 * 109.47011 * 329.99547 * 17 15 13 21 21 H 1.08998 * 109.47022 * 300.35903 * 1 2 3 22 22 H 1.09004 * 109.46937 * 60.36174 * 1 2 3 23 23 H 1.08996 * 109.47289 * 180.35732 * 1 2 3 24 24 H 1.08997 * 109.47317 * 300.15017 * 6 4 2 25 25 H 1.09003 * 109.46900 * 60.14576 * 6 4 2 26 26 H 0.96697 * 113.99677 * 180.02562 * 7 6 4 27 27 H 1.08994 * 111.00628 * 277.23022 * 8 4 2 28 28 H 1.08999 * 111.00615 * 153.37906 * 8 4 2 29 29 H 1.08997 * 110.36961 * 204.15549 * 9 8 4 30 30 H 1.08996 * 110.37146 * 81.82697 * 9 8 4 31 31 H 0.96996 * 119.99793 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0576 -0.7478 -1.2427 5 1 1.3067 -1.4406 -1.6225 6 6 2.4817 0.2386 -2.3326 7 8 2.9613 -0.4837 -3.4686 8 6 3.2863 -1.5183 -0.6915 9 6 2.8099 -1.8826 0.7369 10 7 2.0300 -0.7140 1.1839 11 6 1.8073 -0.3620 2.4657 12 8 1.1453 0.6271 2.7187 13 6 2.3620 -1.1694 3.5533 14 1 2.9458 -2.0498 3.3287 15 6 2.1301 -0.8040 4.8852 16 7 1.4191 0.2582 5.1570 17 14 2.8374 -1.8347 6.2733 18 1 4.1867 -1.3270 6.6290 19 1 1.9470 -1.7467 7.4585 20 1 2.9405 -3.2501 5.8358 21 1 -0.3633 0.5194 0.8867 22 1 -0.3633 0.5082 -0.8932 23 1 -0.3633 -1.0276 0.0064 24 1 1.6262 0.8479 -2.6241 25 1 3.2736 0.8832 -1.9512 26 1 3.2485 0.0795 -4.2002 27 1 4.1669 -0.8769 -0.6579 28 1 3.4807 -2.4156 -1.2791 29 1 3.6655 -2.0412 1.3933 30 1 2.1801 -2.7718 0.7115 31 1 1.2588 0.5115 6.0795 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306439325.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:13 Heat of formation + Delta-G solvation = -121.585436 kcal Electronic energy + Delta-G solvation = -14648.163555 eV Core-core repulsion = 12121.026533 eV Total energy + Delta-G solvation = -2527.137022 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.61163 -38.28196 -36.94090 -34.65812 -32.86761 -31.98019 -28.74078 -27.76841 -24.73133 -23.59339 -21.61485 -20.52020 -18.45028 -18.10422 -17.63183 -16.93591 -16.09420 -15.68493 -15.26256 -14.70843 -14.60482 -14.23565 -13.92566 -13.59740 -13.28159 -13.00839 -12.88554 -12.67191 -12.58504 -12.34014 -11.98579 -11.74798 -11.65604 -11.53484 -10.93972 -10.79963 -9.81324 -9.08866 -8.30178 -6.85705 1.38239 1.40034 1.55192 2.22378 2.45027 2.80131 3.24757 3.56970 3.74242 3.85996 4.11177 4.33443 4.41485 4.46462 4.49714 4.58069 4.73542 4.77164 4.88171 5.04273 5.11212 5.19355 5.29239 5.33680 5.43588 5.67093 6.05937 6.44699 6.85971 6.96238 7.49519 8.46807 8.66772 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.053551 B = 0.008073 C = 0.007318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.743104 B = 3467.706419 C = 3825.285365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.141 3.859 3 H 0.042 0.958 4 C -0.087 4.087 5 H 0.092 0.908 6 C 0.095 3.905 7 O -0.582 6.582 8 C -0.108 4.108 9 C 0.108 3.892 10 N -0.650 5.650 11 C 0.555 3.445 12 O -0.626 6.626 13 C -0.568 4.568 14 H 0.085 0.915 15 C 0.029 3.971 16 N -0.822 5.822 17 Si 0.997 3.003 18 H -0.260 1.260 19 H -0.272 1.272 20 H -0.250 1.250 21 H 0.027 0.973 22 H 0.084 0.916 23 H 0.050 0.950 24 H 0.060 0.940 25 H 0.048 0.952 26 H 0.398 0.602 27 H 0.070 0.930 28 H 0.100 0.900 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.287 -3.970 -12.704 13.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.037 3.963 3 H 0.060 0.940 4 C -0.106 4.106 5 H 0.110 0.890 6 C 0.017 3.983 7 O -0.391 6.391 8 C -0.146 4.146 9 C -0.015 4.015 10 N -0.387 5.387 11 C 0.361 3.639 12 O -0.513 6.513 13 C -0.605 4.605 14 H 0.103 0.897 15 C -0.186 4.186 16 N -0.452 5.452 17 Si 0.816 3.184 18 H -0.185 1.185 19 H -0.197 1.197 20 H -0.173 1.173 21 H 0.046 0.954 22 H 0.102 0.898 23 H 0.069 0.931 24 H 0.078 0.922 25 H 0.066 0.934 26 H 0.248 0.752 27 H 0.089 0.911 28 H 0.119 0.881 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.690 -3.795 -11.998 13.114 hybrid contribution 0.094 0.449 0.580 0.739 sum 3.784 -3.346 -11.418 12.486 Atomic orbital electron populations 1.22019 0.95850 1.01366 1.01411 1.21234 0.93989 0.95300 0.85774 0.94031 1.22142 0.98408 0.97595 0.92492 0.88958 1.21962 0.98050 0.92509 0.85779 1.86400 1.86058 1.38804 1.27819 1.22717 0.96902 1.01249 0.93741 1.22164 0.94928 0.88713 0.95696 1.48621 1.56271 1.29392 1.04440 1.18334 0.79990 0.84622 0.80932 1.90535 1.45890 1.31421 1.83416 1.21419 1.35797 1.12672 0.90570 0.89697 1.26989 0.93258 0.95678 1.02701 1.70192 1.30763 1.23372 1.20871 0.85031 0.78517 0.79018 0.75817 1.18482 1.19651 1.17288 0.95384 0.89752 0.93067 0.92178 0.93368 0.75189 0.91106 0.88111 0.91803 0.92769 0.91565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.75 9.11 71.98 0.66 -5.10 16 2 C 0.14 5.58 3.06 45.35 0.14 5.72 16 3 H 0.04 1.75 7.82 -2.39 -0.02 1.73 16 4 C -0.09 -2.54 2.76 -9.60 -0.03 -2.56 16 5 H 0.09 2.57 7.85 -2.39 -0.02 2.55 16 6 C 0.10 2.16 6.34 71.98 0.46 2.62 16 7 O -0.58 -11.66 13.51 -148.98 -2.01 -13.67 16 8 C -0.11 -3.13 6.39 31.99 0.20 -2.92 16 9 C 0.11 4.06 6.52 86.86 0.57 4.63 16 10 N -0.65 -31.03 3.06 -793.07 -2.43 -33.46 16 11 C 0.55 33.45 7.57 86.36 0.65 34.11 16 12 O -0.63 -42.95 14.06 -4.29 -0.06 -43.01 16 13 C -0.57 -33.21 8.98 24.83 0.22 -32.99 16 14 H 0.08 4.50 6.65 -2.91 -0.02 4.48 16 15 C 0.03 1.63 5.50 85.30 0.47 2.10 16 16 N -0.82 -51.32 11.83 21.84 0.26 -51.06 16 17 Si 1.00 41.75 29.56 68.60 2.03 43.77 16 18 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 19 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 20 H -0.25 -9.74 7.11 99.48 0.71 -9.03 16 21 H 0.03 1.33 6.89 -2.39 -0.02 1.31 16 22 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 23 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 24 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.05 1.10 8.10 -2.39 -0.02 1.08 16 26 H 0.40 4.01 9.12 -74.06 -0.68 3.33 16 27 H 0.07 2.03 8.02 -2.39 -0.02 2.01 16 28 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 29 H 0.06 2.45 7.15 -2.39 -0.02 2.43 16 30 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.27 15.47 8.29 -92.71 -0.77 14.70 16 Total: -1.00 -78.74 260.16 1.58 -77.16 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: 0.45 Total: 14.67 kcal Atomic # 6 Polarization: 2.25 SS G_CDS: 3.34 Total: 5.59 kcal Atomic # 7 Polarization: -82.35 SS G_CDS: -2.17 Total: -84.52 kcal Atomic # 8 Polarization: -54.61 SS G_CDS: -2.07 Total: -56.68 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.77 kcal Total: -78.74 1.58 -77.16 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306439325.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.422 kcal (2) G-P(sol) polarization free energy of solvation -78.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds