Wall clock time and date at job start Sun Mar 29 2020 21:48:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.09002 * 109.99843 * 2 1
4 4 C 1.54333 * 109.99108 * 238.96282 * 2 1 3
5 5 H 1.09000 * 110.67187 * 337.04380 * 4 2 1
6 6 C 1.52998 * 110.85454 * 100.19670 * 4 2 1
7 7 O 1.42901 * 109.47539 * 180.14252 * 6 4 2
8 8 C 1.55157 * 103.02064 * 218.66520 * 4 2 1
9 9 C 1.54913 * 101.58216 * 35.30878 * 8 4 2
10 10 N 1.47017 * 109.88243 * 121.09422 * 2 1 3
11 11 C 1.34777 * 125.64827 * 298.39792 * 10 2 1
12 12 O 1.21682 * 119.99992 * 359.71157 * 11 10 2
13 13 C 1.46376 * 119.99803 * 179.71778 * 11 10 2
14 14 H 1.07995 * 120.00124 * 359.71785 * 13 11 10
15 15 C 1.40050 * 119.99863 * 180.02562 * 13 11 10
16 16 N 1.30676 * 119.99974 * 359.97438 * 15 13 11
17 17 Si 1.86800 * 120.00158 * 179.97438 * 15 13 11
18 18 H 1.48498 * 109.47118 * 89.99406 * 17 15 13
19 19 H 1.48499 * 109.47134 * 209.99926 * 17 15 13
20 20 H 1.48498 * 109.47011 * 329.99547 * 17 15 13
21 21 H 1.08998 * 109.47022 * 300.35903 * 1 2 3
22 22 H 1.09004 * 109.46937 * 60.36174 * 1 2 3
23 23 H 1.08996 * 109.47289 * 180.35732 * 1 2 3
24 24 H 1.08997 * 109.47317 * 300.15017 * 6 4 2
25 25 H 1.09003 * 109.46900 * 60.14576 * 6 4 2
26 26 H 0.96697 * 113.99677 * 180.02562 * 7 6 4
27 27 H 1.08994 * 111.00628 * 277.23022 * 8 4 2
28 28 H 1.08999 * 111.00615 * 153.37906 * 8 4 2
29 29 H 1.08997 * 110.36961 * 204.15549 * 9 8 4
30 30 H 1.08996 * 110.37146 * 81.82697 * 9 8 4
31 31 H 0.96996 * 119.99793 * 180.02562 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9028 1.0243 0.0000
4 6 2.0576 -0.7478 -1.2427
5 1 1.3067 -1.4406 -1.6225
6 6 2.4817 0.2386 -2.3326
7 8 2.9613 -0.4837 -3.4686
8 6 3.2863 -1.5183 -0.6915
9 6 2.8099 -1.8826 0.7369
10 7 2.0300 -0.7140 1.1839
11 6 1.8073 -0.3620 2.4657
12 8 1.1453 0.6271 2.7187
13 6 2.3620 -1.1694 3.5533
14 1 2.9458 -2.0498 3.3287
15 6 2.1301 -0.8040 4.8852
16 7 1.4191 0.2582 5.1570
17 14 2.8374 -1.8347 6.2733
18 1 4.1867 -1.3270 6.6290
19 1 1.9470 -1.7467 7.4585
20 1 2.9405 -3.2501 5.8358
21 1 -0.3633 0.5194 0.8867
22 1 -0.3633 0.5082 -0.8932
23 1 -0.3633 -1.0276 0.0064
24 1 1.6262 0.8479 -2.6241
25 1 3.2736 0.8832 -1.9512
26 1 3.2485 0.0795 -4.2002
27 1 4.1669 -0.8769 -0.6579
28 1 3.4807 -2.4156 -1.2791
29 1 3.6655 -2.0412 1.3933
30 1 2.1801 -2.7718 0.7115
31 1 1.2588 0.5115 6.0795
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000306439325.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:48:13
Heat of formation + Delta-G solvation = -121.585436 kcal
Electronic energy + Delta-G solvation = -14648.163555 eV
Core-core repulsion = 12121.026533 eV
Total energy + Delta-G solvation = -2527.137022 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 213.115 amu
Computer time = 0.21 seconds
Orbital eigenvalues (eV)
-40.61163 -38.28196 -36.94090 -34.65812 -32.86761 -31.98019 -28.74078 -27.76841
-24.73133 -23.59339 -21.61485 -20.52020 -18.45028 -18.10422 -17.63183 -16.93591
-16.09420 -15.68493 -15.26256 -14.70843 -14.60482 -14.23565 -13.92566 -13.59740
-13.28159 -13.00839 -12.88554 -12.67191 -12.58504 -12.34014 -11.98579 -11.74798
-11.65604 -11.53484 -10.93972 -10.79963 -9.81324 -9.08866 -8.30178 -6.85705
1.38239 1.40034 1.55192 2.22378 2.45027 2.80131 3.24757 3.56970
3.74242 3.85996 4.11177 4.33443 4.41485 4.46462 4.49714 4.58069
4.73542 4.77164 4.88171 5.04273 5.11212 5.19355 5.29239 5.33680
5.43588 5.67093 6.05937 6.44699 6.85971 6.96238 7.49519 8.46807
8.66772
Molecular weight = 213.12amu
Principal moments of inertia in cm(-1)
A = 0.053551 B = 0.008073 C = 0.007318
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 522.743104 B = 3467.706419 C = 3825.285365
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C 0.141 3.859
3 H 0.042 0.958
4 C -0.087 4.087
5 H 0.092 0.908
6 C 0.095 3.905
7 O -0.582 6.582
8 C -0.108 4.108
9 C 0.108 3.892
10 N -0.650 5.650
11 C 0.555 3.445
12 O -0.626 6.626
13 C -0.568 4.568
14 H 0.085 0.915
15 C 0.029 3.971
16 N -0.822 5.822
17 Si 0.997 3.003
18 H -0.260 1.260
19 H -0.272 1.272
20 H -0.250 1.250
21 H 0.027 0.973
22 H 0.084 0.916
23 H 0.050 0.950
24 H 0.060 0.940
25 H 0.048 0.952
26 H 0.398 0.602
27 H 0.070 0.930
28 H 0.100 0.900
29 H 0.064 0.936
30 H 0.054 0.946
31 H 0.274 0.726
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.287 -3.970 -12.704 13.983
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C 0.037 3.963
3 H 0.060 0.940
4 C -0.106 4.106
5 H 0.110 0.890
6 C 0.017 3.983
7 O -0.391 6.391
8 C -0.146 4.146
9 C -0.015 4.015
10 N -0.387 5.387
11 C 0.361 3.639
12 O -0.513 6.513
13 C -0.605 4.605
14 H 0.103 0.897
15 C -0.186 4.186
16 N -0.452 5.452
17 Si 0.816 3.184
18 H -0.185 1.185
19 H -0.197 1.197
20 H -0.173 1.173
21 H 0.046 0.954
22 H 0.102 0.898
23 H 0.069 0.931
24 H 0.078 0.922
25 H 0.066 0.934
26 H 0.248 0.752
27 H 0.089 0.911
28 H 0.119 0.881
29 H 0.082 0.918
30 H 0.072 0.928
31 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges 3.690 -3.795 -11.998 13.114
hybrid contribution 0.094 0.449 0.580 0.739
sum 3.784 -3.346 -11.418 12.486
Atomic orbital electron populations
1.22019 0.95850 1.01366 1.01411 1.21234 0.93989 0.95300 0.85774
0.94031 1.22142 0.98408 0.97595 0.92492 0.88958 1.21962 0.98050
0.92509 0.85779 1.86400 1.86058 1.38804 1.27819 1.22717 0.96902
1.01249 0.93741 1.22164 0.94928 0.88713 0.95696 1.48621 1.56271
1.29392 1.04440 1.18334 0.79990 0.84622 0.80932 1.90535 1.45890
1.31421 1.83416 1.21419 1.35797 1.12672 0.90570 0.89697 1.26989
0.93258 0.95678 1.02701 1.70192 1.30763 1.23372 1.20871 0.85031
0.78517 0.79018 0.75817 1.18482 1.19651 1.17288 0.95384 0.89752
0.93067 0.92178 0.93368 0.75189 0.91106 0.88111 0.91803 0.92769
0.91565
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -5.75 9.11 71.98 0.66 -5.10 16
2 C 0.14 5.58 3.06 45.35 0.14 5.72 16
3 H 0.04 1.75 7.82 -2.39 -0.02 1.73 16
4 C -0.09 -2.54 2.76 -9.60 -0.03 -2.56 16
5 H 0.09 2.57 7.85 -2.39 -0.02 2.55 16
6 C 0.10 2.16 6.34 71.98 0.46 2.62 16
7 O -0.58 -11.66 13.51 -148.98 -2.01 -13.67 16
8 C -0.11 -3.13 6.39 31.99 0.20 -2.92 16
9 C 0.11 4.06 6.52 86.86 0.57 4.63 16
10 N -0.65 -31.03 3.06 -793.07 -2.43 -33.46 16
11 C 0.55 33.45 7.57 86.36 0.65 34.11 16
12 O -0.63 -42.95 14.06 -4.29 -0.06 -43.01 16
13 C -0.57 -33.21 8.98 24.83 0.22 -32.99 16
14 H 0.08 4.50 6.65 -2.91 -0.02 4.48 16
15 C 0.03 1.63 5.50 85.30 0.47 2.10 16
16 N -0.82 -51.32 11.83 21.84 0.26 -51.06 16
17 Si 1.00 41.75 29.56 68.60 2.03 43.77 16
18 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16
19 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16
20 H -0.25 -9.74 7.11 99.48 0.71 -9.03 16
21 H 0.03 1.33 6.89 -2.39 -0.02 1.31 16
22 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16
23 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16
24 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16
25 H 0.05 1.10 8.10 -2.39 -0.02 1.08 16
26 H 0.40 4.01 9.12 -74.06 -0.68 3.33 16
27 H 0.07 2.03 8.02 -2.39 -0.02 2.01 16
28 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16
29 H 0.06 2.45 7.15 -2.39 -0.02 2.43 16
30 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16
31 H 0.27 15.47 8.29 -92.71 -0.77 14.70 16
Total: -1.00 -78.74 260.16 1.58 -77.16
By element:
Atomic # 1 Polarization: 14.22 SS G_CDS: 0.45 Total: 14.67 kcal
Atomic # 6 Polarization: 2.25 SS G_CDS: 3.34 Total: 5.59 kcal
Atomic # 7 Polarization: -82.35 SS G_CDS: -2.17 Total: -84.52 kcal
Atomic # 8 Polarization: -54.61 SS G_CDS: -2.07 Total: -56.68 kcal
Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.77 kcal
Total: -78.74 1.58 -77.16 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000306439325.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -44.422 kcal
(2) G-P(sol) polarization free energy of solvation -78.739 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.161 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.575 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.164 kcal
(6) G-S(sol) free energy of system = (1) + (5) -121.585 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.21 seconds