Wall clock time and date at job start Sun Mar 29 2020 21:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.99683 * 2 1 4 4 C 1.54326 * 109.88106 * 238.90724 * 2 1 3 5 5 H 1.08996 * 110.72194 * 144.40582 * 4 2 1 6 6 C 1.52999 * 110.87107 * 21.20612 * 4 2 1 7 7 O 1.42901 * 109.47318 * 177.54748 * 6 4 2 8 8 C 1.55153 * 102.94043 * 262.77353 * 4 2 1 9 9 C 1.54901 * 101.58491 * 324.49548 * 8 4 2 10 10 N 1.47017 * 109.88506 * 121.09625 * 2 1 3 11 11 C 1.34775 * 125.65172 * 300.51998 * 10 2 1 12 12 O 1.21683 * 119.99644 * 359.97326 * 11 10 2 13 13 C 1.46374 * 120.00148 * 179.97438 * 11 10 2 14 14 H 1.08000 * 119.99800 * 354.00876 * 13 11 10 15 15 C 1.40040 * 120.00095 * 174.00607 * 13 11 10 16 16 N 1.30671 * 119.99933 * 6.18381 * 15 13 11 17 17 Si 1.86803 * 120.00381 * 186.18311 * 15 13 11 18 18 H 1.48501 * 109.46991 * 94.98028 * 17 15 13 19 19 H 1.48501 * 109.47255 * 214.98414 * 17 15 13 20 20 H 1.48503 * 109.46538 * 334.98308 * 17 15 13 21 21 H 1.08996 * 109.47200 * 181.09555 * 1 2 3 22 22 H 1.09002 * 109.46829 * 301.09248 * 1 2 3 23 23 H 1.08998 * 109.47930 * 61.08987 * 1 2 3 24 24 H 1.08996 * 109.47280 * 297.55079 * 6 4 2 25 25 H 1.09005 * 109.47520 * 57.54948 * 6 4 2 26 26 H 0.96698 * 114.00056 * 180.02562 * 7 6 4 27 27 H 1.09001 * 111.00573 * 82.57693 * 8 4 2 28 28 H 1.09007 * 111.00305 * 206.41995 * 8 4 2 29 29 H 1.08995 * 110.37139 * 155.84892 * 9 8 4 30 30 H 1.09004 * 110.36873 * 278.06930 * 9 8 4 31 31 H 0.97008 * 120.00125 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7495 -1.2428 5 1 2.9655 -0.2831 -1.6184 6 6 0.9868 -0.8054 -2.3369 7 8 1.5220 -1.4540 -3.4923 8 6 2.3518 -2.1694 -0.6925 9 6 2.8568 -1.8498 0.7366 10 7 2.0300 -0.7140 1.1838 11 6 1.7742 -0.3854 2.4656 12 8 1.0745 0.5774 2.7188 13 6 2.3380 -1.1867 3.5532 14 1 2.8776 -2.0953 3.3307 15 6 2.1777 -0.7750 4.8820 16 7 1.4244 0.2558 5.1603 17 14 3.0409 -1.6993 6.2569 18 1 4.3259 -1.0263 6.5751 19 1 2.1762 -1.7115 7.4641 20 1 3.3068 -3.0947 5.8242 21 1 -0.3633 -1.0274 0.0196 22 1 -0.3633 0.5307 0.8801 23 1 -0.3635 0.4968 -0.8995 24 1 0.1237 -1.3636 -1.9740 25 1 0.6806 0.2076 -2.5981 26 1 0.8984 -1.5247 -4.2280 27 1 1.4451 -2.7736 -0.6605 28 1 3.1269 -2.6618 -1.2798 29 1 2.7089 -2.7080 1.3920 30 1 3.9097 -1.5685 0.7128 31 1 1.3136 0.5412 6.0808 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306439329.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:18 Heat of formation + Delta-G solvation = -90.522094 kcal Electronic energy + Delta-G solvation = -14711.210648 eV Core-core repulsion = 12185.420633 eV Total energy + Delta-G solvation = -2525.790015 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.13631 -36.76128 -35.38694 -32.50313 -31.49264 -30.20496 -26.80508 -25.73766 -24.03010 -21.97023 -19.85995 -18.28763 -17.41733 -16.72847 -15.51722 -15.30404 -14.52383 -14.26650 -13.83904 -13.38413 -12.72245 -12.52352 -12.18922 -12.08234 -11.75339 -11.37114 -11.25990 -10.92074 -10.84349 -10.57710 -10.35235 -10.20200 -10.15751 -10.03651 -9.69097 -8.83859 -7.57795 -7.16987 -6.19632 -4.62708 3.14204 3.21317 3.24852 4.06176 4.24687 4.55475 4.63211 4.96714 5.15128 5.33253 5.56648 5.61511 5.71080 5.80797 5.87049 6.01138 6.07854 6.14489 6.35372 6.40318 6.48947 6.70223 6.75864 7.00943 7.44753 7.45152 7.65103 8.14133 8.44685 9.03132 9.52657 10.58769 10.77979 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.058552 B = 0.008064 C = 0.007286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.091009 B = 3471.594392 C = 3842.239727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.150 3.850 3 H 0.058 0.942 4 C -0.098 4.098 5 H 0.082 0.918 6 C 0.087 3.913 7 O -0.576 6.576 8 C -0.121 4.121 9 C 0.116 3.884 10 N -0.641 5.641 11 C 0.574 3.426 12 O -0.575 6.575 13 C -0.540 4.540 14 H 0.070 0.930 15 C 0.087 3.913 16 N -0.768 5.768 17 Si 0.907 3.093 18 H -0.272 1.272 19 H -0.279 1.279 20 H -0.264 1.264 21 H 0.049 0.951 22 H 0.075 0.925 23 H 0.046 0.954 24 H 0.052 0.948 25 H 0.046 0.954 26 H 0.374 0.626 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.047 0.953 31 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.459 -4.195 -11.403 12.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.045 3.955 3 H 0.076 0.924 4 C -0.117 4.117 5 H 0.100 0.900 6 C 0.009 3.991 7 O -0.381 6.381 8 C -0.160 4.160 9 C -0.009 4.009 10 N -0.381 5.381 11 C 0.380 3.620 12 O -0.457 6.457 13 C -0.577 4.577 14 H 0.088 0.912 15 C -0.132 4.132 16 N -0.397 5.397 17 Si 0.732 3.268 18 H -0.198 1.198 19 H -0.204 1.204 20 H -0.189 1.189 21 H 0.068 0.932 22 H 0.094 0.906 23 H 0.065 0.935 24 H 0.070 0.930 25 H 0.064 0.936 26 H 0.220 0.780 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.065 0.935 31 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.497 -3.536 -10.613 11.197 hybrid contribution -0.019 -0.424 0.295 0.517 sum 0.477 -3.960 -10.317 11.061 Atomic orbital electron populations 1.22210 0.96291 1.01475 1.01964 1.21021 0.93806 0.95491 0.85144 0.92427 1.22192 0.98415 0.97515 0.93612 0.90004 1.22306 0.95723 0.95667 0.85362 1.86469 1.43861 1.81936 1.25817 1.22773 1.01311 0.95717 0.96156 1.21923 0.94447 0.90971 0.93511 1.48790 1.54007 1.30503 1.04765 1.17997 0.80466 0.84726 0.78800 1.90585 1.41982 1.31319 1.81806 1.20910 1.37329 1.09727 0.89758 0.91232 1.25716 0.93600 0.94435 0.99460 1.70029 1.28784 1.21297 1.19616 0.86363 0.79624 0.80480 0.80339 1.19780 1.20444 1.18860 0.93201 0.90557 0.93467 0.93012 0.93618 0.77965 0.91390 0.90900 0.91265 0.93459 0.92121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.04 7.96 37.15 0.30 -2.74 16 2 C 0.15 2.98 3.44 -66.96 -0.23 2.75 16 3 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 4 C -0.10 -1.55 3.14 -88.79 -0.28 -1.83 16 5 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 6 C 0.09 1.13 5.17 37.16 0.19 1.32 16 7 O -0.58 -6.96 13.55 -35.23 -0.48 -7.44 16 8 C -0.12 -1.91 6.43 -24.59 -0.16 -2.07 16 9 C 0.12 2.23 6.56 -2.53 -0.02 2.21 16 10 N -0.64 -15.05 3.08 -164.66 -0.51 -15.56 16 11 C 0.57 16.64 7.56 -12.99 -0.10 16.54 16 12 O -0.57 -18.65 13.95 5.20 0.07 -18.58 16 13 C -0.54 -15.48 8.99 -35.63 -0.32 -15.80 16 14 H 0.07 1.84 6.60 -52.49 -0.35 1.50 16 15 C 0.09 2.46 5.49 -17.37 -0.10 2.37 16 16 N -0.77 -23.17 11.85 55.55 0.66 -22.52 16 17 Si 0.91 20.31 29.56 -169.99 -5.03 15.29 16 18 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 19 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 20 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16 21 H 0.05 0.91 7.61 -51.93 -0.40 0.52 16 22 H 0.08 1.74 6.76 -51.93 -0.35 1.39 16 23 H 0.05 0.71 6.61 -51.93 -0.34 0.37 16 24 H 0.05 0.66 6.76 -51.93 -0.35 0.31 16 25 H 0.05 0.54 7.46 -51.93 -0.39 0.16 16 26 H 0.37 2.67 9.12 45.56 0.42 3.09 16 27 H 0.07 1.06 7.98 -51.93 -0.41 0.65 16 28 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.07 1.35 7.07 -51.93 -0.37 0.98 16 30 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.27 7.32 8.29 -40.82 -0.34 6.98 16 LS Contribution 254.88 15.07 3.84 3.84 Total: -1.00 -34.69 254.88 -5.51 -40.20 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -3.37 Total: 2.02 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: -0.71 Total: 2.74 kcal Atomic # 7 Polarization: -38.22 SS G_CDS: 0.15 Total: -38.07 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: -0.40 Total: -26.02 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.03 Total: 15.29 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -34.69 -5.51 -40.20 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306439329.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.322 kcal (2) G-P(sol) polarization free energy of solvation -34.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds