Wall clock time and date at job start Sun Mar 29 2020 21:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.99683 * 2 1 4 4 C 1.54326 * 109.88106 * 238.90724 * 2 1 3 5 5 H 1.08996 * 110.72194 * 144.40582 * 4 2 1 6 6 C 1.52999 * 110.87107 * 21.20612 * 4 2 1 7 7 O 1.42901 * 109.47318 * 177.54748 * 6 4 2 8 8 C 1.55153 * 102.94043 * 262.77353 * 4 2 1 9 9 C 1.54901 * 101.58491 * 324.49548 * 8 4 2 10 10 N 1.47017 * 109.88506 * 121.09625 * 2 1 3 11 11 C 1.34775 * 125.65172 * 300.51998 * 10 2 1 12 12 O 1.21683 * 119.99644 * 359.97326 * 11 10 2 13 13 C 1.46374 * 120.00148 * 179.97438 * 11 10 2 14 14 H 1.08000 * 119.99800 * 354.00876 * 13 11 10 15 15 C 1.40040 * 120.00095 * 174.00607 * 13 11 10 16 16 N 1.30671 * 119.99933 * 6.18381 * 15 13 11 17 17 Si 1.86803 * 120.00381 * 186.18311 * 15 13 11 18 18 H 1.48501 * 109.46991 * 94.98028 * 17 15 13 19 19 H 1.48501 * 109.47255 * 214.98414 * 17 15 13 20 20 H 1.48503 * 109.46538 * 334.98308 * 17 15 13 21 21 H 1.08996 * 109.47200 * 181.09555 * 1 2 3 22 22 H 1.09002 * 109.46829 * 301.09248 * 1 2 3 23 23 H 1.08998 * 109.47930 * 61.08987 * 1 2 3 24 24 H 1.08996 * 109.47280 * 297.55079 * 6 4 2 25 25 H 1.09005 * 109.47520 * 57.54948 * 6 4 2 26 26 H 0.96698 * 114.00056 * 180.02562 * 7 6 4 27 27 H 1.09001 * 111.00573 * 82.57693 * 8 4 2 28 28 H 1.09007 * 111.00305 * 206.41995 * 8 4 2 29 29 H 1.08995 * 110.37139 * 155.84892 * 9 8 4 30 30 H 1.09004 * 110.36873 * 278.06930 * 9 8 4 31 31 H 0.97008 * 120.00125 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7495 -1.2428 5 1 2.9655 -0.2831 -1.6184 6 6 0.9868 -0.8054 -2.3369 7 8 1.5220 -1.4540 -3.4923 8 6 2.3518 -2.1694 -0.6925 9 6 2.8568 -1.8498 0.7366 10 7 2.0300 -0.7140 1.1838 11 6 1.7742 -0.3854 2.4656 12 8 1.0745 0.5774 2.7188 13 6 2.3380 -1.1867 3.5532 14 1 2.8776 -2.0953 3.3307 15 6 2.1777 -0.7750 4.8820 16 7 1.4244 0.2558 5.1603 17 14 3.0409 -1.6993 6.2569 18 1 4.3259 -1.0263 6.5751 19 1 2.1762 -1.7115 7.4641 20 1 3.3068 -3.0947 5.8242 21 1 -0.3633 -1.0274 0.0196 22 1 -0.3633 0.5307 0.8801 23 1 -0.3635 0.4968 -0.8995 24 1 0.1237 -1.3636 -1.9740 25 1 0.6806 0.2076 -2.5981 26 1 0.8984 -1.5247 -4.2280 27 1 1.4451 -2.7736 -0.6605 28 1 3.1269 -2.6618 -1.2798 29 1 2.7089 -2.7080 1.3920 30 1 3.9097 -1.5685 0.7128 31 1 1.3136 0.5412 6.0808 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306439329.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:18 Heat of formation + Delta-G solvation = -118.030614 kcal Electronic energy + Delta-G solvation = -14712.403507 eV Core-core repulsion = 12185.420633 eV Total energy + Delta-G solvation = -2526.982874 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.72330 -38.32595 -36.90709 -34.66352 -33.09420 -31.76748 -28.67495 -27.38518 -25.45932 -23.60967 -21.55884 -19.87129 -18.72615 -18.29981 -17.60939 -16.70346 -16.22894 -15.65039 -15.57600 -14.78477 -14.38326 -14.12587 -13.86350 -13.50891 -13.33593 -13.13081 -12.96938 -12.70978 -12.62010 -12.26402 -11.97766 -11.75979 -11.61593 -11.43485 -10.94160 -10.72732 -9.80435 -9.09592 -8.31261 -6.85416 1.38110 1.39515 1.55341 2.22194 2.44649 2.80472 3.26787 3.54814 3.73326 3.83622 4.15940 4.29020 4.40279 4.46290 4.49946 4.63009 4.69807 4.81909 4.90481 4.98633 5.10005 5.19057 5.32616 5.34835 5.43087 5.67437 6.06215 6.44281 6.85892 6.98703 7.49102 8.46295 8.66215 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.058552 B = 0.008064 C = 0.007286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.091009 B = 3471.594392 C = 3842.239727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.140 3.860 3 H 0.037 0.963 4 C -0.088 4.088 5 H 0.087 0.913 6 C 0.095 3.905 7 O -0.586 6.586 8 C -0.107 4.107 9 C 0.108 3.892 10 N -0.649 5.649 11 C 0.555 3.445 12 O -0.625 6.625 13 C -0.569 4.569 14 H 0.085 0.915 15 C 0.029 3.971 16 N -0.822 5.822 17 Si 0.997 3.003 18 H -0.263 1.263 19 H -0.271 1.271 20 H -0.248 1.248 21 H 0.053 0.947 22 H 0.026 0.974 23 H 0.088 0.912 24 H 0.057 0.943 25 H 0.060 0.940 26 H 0.398 0.602 27 H 0.072 0.928 28 H 0.100 0.900 29 H 0.063 0.937 30 H 0.054 0.946 31 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.344 -6.000 -12.725 14.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.035 3.965 3 H 0.056 0.944 4 C -0.107 4.107 5 H 0.105 0.895 6 C 0.017 3.983 7 O -0.394 6.394 8 C -0.145 4.145 9 C -0.015 4.015 10 N -0.387 5.387 11 C 0.362 3.638 12 O -0.512 6.512 13 C -0.605 4.605 14 H 0.103 0.897 15 C -0.186 4.186 16 N -0.452 5.452 17 Si 0.816 3.184 18 H -0.188 1.188 19 H -0.196 1.196 20 H -0.171 1.171 21 H 0.072 0.928 22 H 0.046 0.954 23 H 0.107 0.893 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.248 0.752 27 H 0.091 0.909 28 H 0.118 0.882 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.389 -5.375 -12.016 13.237 hybrid contribution -0.296 0.158 0.596 0.683 sum 1.093 -5.217 -11.421 12.604 Atomic orbital electron populations 1.22090 0.95627 1.01458 1.01620 1.21244 0.94460 0.94926 0.85844 0.94447 1.22089 0.99467 0.96577 0.92581 0.89501 1.22107 0.94356 0.96813 0.85032 1.86396 1.45069 1.81723 1.26247 1.22717 1.02200 0.95886 0.93655 1.22164 0.94367 0.89293 0.95718 1.48626 1.53923 1.31728 1.04425 1.18334 0.80179 0.84409 0.80921 1.90533 1.44031 1.33248 1.83419 1.21412 1.37846 1.10545 0.90733 0.89697 1.26982 0.93876 0.95207 1.02520 1.70194 1.30652 1.23538 1.20787 0.85020 0.78168 0.79282 0.75911 1.18773 1.19552 1.17147 0.92753 0.95436 0.89338 0.92503 0.92227 0.75202 0.90911 0.88181 0.91856 0.92749 0.91550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.65 7.96 71.98 0.57 -5.08 16 2 C 0.14 5.53 3.44 45.34 0.16 5.69 16 3 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 4 C -0.09 -2.57 3.14 -9.61 -0.03 -2.60 16 5 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 6 C 0.09 2.11 5.17 71.98 0.37 2.49 16 7 O -0.59 -11.68 13.55 -148.98 -2.02 -13.70 16 8 C -0.11 -3.07 6.43 31.98 0.21 -2.86 16 9 C 0.11 4.05 6.56 86.85 0.57 4.62 16 10 N -0.65 -31.04 3.08 -793.10 -2.44 -33.49 16 11 C 0.56 33.47 7.56 86.36 0.65 34.12 16 12 O -0.63 -42.88 13.95 -4.29 -0.06 -42.94 16 13 C -0.57 -33.26 8.99 24.83 0.22 -33.04 16 14 H 0.08 4.51 6.60 -2.91 -0.02 4.49 16 15 C 0.03 1.66 5.49 85.30 0.47 2.12 16 16 N -0.82 -51.28 11.85 21.83 0.26 -51.02 16 17 Si 1.00 41.77 29.56 68.60 2.03 43.80 16 18 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 19 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 20 H -0.25 -9.64 7.11 99.48 0.71 -8.94 16 21 H 0.05 1.96 7.61 -2.39 -0.02 1.94 16 22 H 0.03 1.29 6.76 -2.39 -0.02 1.27 16 23 H 0.09 2.53 6.61 -2.39 -0.02 2.51 16 24 H 0.06 1.23 6.76 -2.39 -0.02 1.22 16 25 H 0.06 1.19 7.46 -2.38 -0.02 1.17 16 26 H 0.40 3.95 9.12 -74.06 -0.68 3.27 16 27 H 0.07 2.05 7.98 -2.39 -0.02 2.03 16 28 H 0.10 2.40 8.14 -2.38 -0.02 2.38 16 29 H 0.06 2.42 7.07 -2.39 -0.02 2.41 16 30 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 31 H 0.27 15.46 8.29 -92.70 -0.77 14.69 16 Total: -1.00 -78.90 254.88 1.41 -77.49 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: 0.46 Total: 14.41 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: 3.19 Total: 5.46 kcal Atomic # 7 Polarization: -82.32 SS G_CDS: -2.18 Total: -84.51 kcal Atomic # 8 Polarization: -54.57 SS G_CDS: -2.08 Total: -56.64 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.80 kcal Total: -78.90 1.41 -77.49 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306439329.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.544 kcal (2) G-P(sol) polarization free energy of solvation -78.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds