Wall clock time and date at job start Sun Mar 29 2020 21:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.90030 * 2 1 4 4 C 1.53997 * 109.91511 * 121.09352 * 2 1 3 5 5 H 1.08999 * 110.32676 * 359.35378 * 4 2 1 6 6 C 1.53003 * 110.41442 * 237.18630 * 4 2 1 7 7 O 1.42904 * 109.47504 * 177.87461 * 6 4 2 8 8 C 1.54614 * 105.04804 * 118.24955 * 4 2 1 9 9 C 1.54949 * 102.99996 * 338.06251 * 8 4 2 10 10 N 1.47484 * 110.07455 * 238.81069 * 2 1 3 11 11 C 1.34779 * 127.03977 * 86.03050 * 10 2 1 12 12 O 1.21690 * 119.99440 * 0.02562 * 11 10 2 13 13 C 1.46372 * 120.00313 * 180.02562 * 11 10 2 14 14 H 1.08000 * 119.99682 * 353.99641 * 13 11 10 15 15 C 1.40043 * 119.99925 * 173.99141 * 13 11 10 16 16 N 1.30668 * 120.00060 * 6.19037 * 15 13 11 17 17 Si 1.86802 * 119.99699 * 186.18938 * 15 13 11 18 18 H 1.48498 * 109.47539 * 94.98784 * 17 15 13 19 19 H 1.48509 * 109.46955 * 214.98407 * 17 15 13 20 20 H 1.48499 * 109.47485 * 334.98182 * 17 15 13 21 21 H 1.08996 * 109.47085 * 298.90311 * 1 2 3 22 22 H 1.08997 * 109.47052 * 58.91155 * 1 2 3 23 23 H 1.09003 * 109.46859 * 178.90602 * 1 2 3 24 24 H 1.09007 * 109.46954 * 297.87203 * 6 4 2 25 25 H 1.08997 * 109.47150 * 57.86872 * 6 4 2 26 26 H 0.96701 * 113.99958 * 179.97438 * 7 6 4 27 27 H 1.09001 * 110.73986 * 96.48527 * 8 4 2 28 28 H 1.08992 * 110.74578 * 219.63177 * 8 4 2 29 29 H 1.08993 * 110.66332 * 155.90757 * 9 8 4 30 30 H 1.08999 * 110.65449 * 279.02484 * 9 8 4 31 31 H 0.97003 * 119.99520 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9011 1.0250 0.0000 4 6 2.0546 -0.7477 1.2399 5 1 1.2226 -1.1015 1.8488 6 6 2.9670 0.1618 2.0652 7 8 3.4021 -0.5346 3.2348 8 6 2.8558 -1.9446 0.6776 9 6 2.2704 -2.1178 -0.7465 10 7 2.0362 -0.7174 -1.1850 11 6 2.2450 -0.2074 -2.4150 12 8 2.0096 0.9661 -2.6350 13 6 2.7547 -1.0649 -3.4861 14 1 3.0552 -2.0793 -3.2689 15 6 2.8527 -0.5701 -4.7925 16 7 2.6050 0.6899 -5.0342 17 14 3.3377 -1.7114 -6.1896 18 1 2.1144 -2.2270 -6.8550 19 1 4.1603 -0.9652 -7.1755 20 1 4.1242 -2.8491 -5.6490 21 1 -0.3633 0.4967 0.8996 22 1 -0.3633 0.5306 -0.8800 23 1 -0.3633 -1.0275 -0.0196 24 1 3.8335 0.4457 1.4680 25 1 2.4186 1.0571 2.3583 26 1 3.9858 -0.0171 3.8063 27 1 3.9192 -1.7099 0.6319 28 1 2.6849 -2.8391 1.2766 29 1 2.9880 -2.6142 -1.3996 30 1 1.3325 -2.6722 -0.7119 31 1 2.6725 1.0325 -5.9392 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306439330.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:21 Heat of formation + Delta-G solvation = -92.998036 kcal Electronic energy + Delta-G solvation = -14667.575537 eV Core-core repulsion = 12141.678157 eV Total energy + Delta-G solvation = -2525.897380 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.97693 -36.69317 -35.42227 -32.50105 -31.05577 -30.36869 -27.22529 -26.06039 -23.21871 -21.99318 -20.02335 -18.74371 -17.04402 -16.62349 -15.68799 -15.25778 -14.54750 -14.15892 -13.71327 -13.33393 -12.76170 -12.50507 -12.30545 -12.07151 -11.61070 -11.49867 -11.20250 -10.92362 -10.81815 -10.62849 -10.31262 -10.23167 -10.13233 -10.06966 -9.74060 -8.85196 -7.61895 -7.23424 -6.20889 -4.63693 3.13605 3.20705 3.24241 4.06607 4.27673 4.55341 4.59041 5.04773 5.18489 5.33076 5.64038 5.65871 5.72703 5.83508 5.89954 6.00016 6.09087 6.11651 6.33704 6.41075 6.48921 6.66627 6.71043 6.85544 7.37175 7.44724 7.68313 8.12680 8.44328 9.02143 9.52894 10.57744 10.76891 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.046123 B = 0.008288 C = 0.007804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.927022 B = 3377.488057 C = 3586.901078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.142 3.858 3 H 0.070 0.930 4 C -0.097 4.097 5 H 0.081 0.919 6 C 0.085 3.915 7 O -0.575 6.575 8 C -0.122 4.122 9 C 0.112 3.888 10 N -0.640 5.640 11 C 0.576 3.424 12 O -0.577 6.577 13 C -0.540 4.540 14 H 0.070 0.930 15 C 0.087 3.913 16 N -0.769 5.769 17 Si 0.908 3.092 18 H -0.272 1.272 19 H -0.279 1.279 20 H -0.264 1.264 21 H 0.049 0.951 22 H 0.060 0.940 23 H 0.051 0.949 24 H 0.049 0.951 25 H 0.044 0.956 26 H 0.374 0.626 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.049 0.951 31 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.388 -4.082 10.619 11.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.037 3.963 3 H 0.088 0.912 4 C -0.116 4.116 5 H 0.100 0.900 6 C 0.007 3.993 7 O -0.379 6.379 8 C -0.160 4.160 9 C -0.013 4.013 10 N -0.379 5.379 11 C 0.383 3.617 12 O -0.460 6.460 13 C -0.577 4.577 14 H 0.088 0.912 15 C -0.132 4.132 16 N -0.398 5.398 17 Si 0.732 3.268 18 H -0.198 1.198 19 H -0.204 1.204 20 H -0.188 1.188 21 H 0.068 0.932 22 H 0.079 0.921 23 H 0.070 0.930 24 H 0.067 0.933 25 H 0.062 0.938 26 H 0.220 0.780 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.096 0.904 30 H 0.067 0.933 31 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.103 -3.686 9.958 10.619 hybrid contribution 0.519 -0.132 -0.409 0.674 sum 0.416 -3.818 9.550 10.293 Atomic orbital electron populations 1.22117 0.96367 1.01370 1.01268 1.21060 0.93160 0.96761 0.85338 0.91221 1.22111 0.97872 0.96201 0.95458 0.90038 1.22290 0.97188 0.93856 0.85935 1.86466 1.69907 1.45067 1.36505 1.22689 0.99713 0.97224 0.96385 1.22252 0.98965 0.86327 0.93719 1.49231 1.70519 1.08710 1.09484 1.18017 0.77651 0.87371 0.78683 1.90606 1.57229 1.17727 1.80397 1.20885 1.45554 0.99318 0.91908 0.91182 1.25721 0.93135 0.94858 0.99531 1.70030 1.35521 1.13324 1.20877 0.86355 0.78996 0.80696 0.80713 1.19770 1.20432 1.18843 0.93159 0.92098 0.93029 0.93296 0.93810 0.77971 0.91397 0.91346 0.90391 0.93297 0.92099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 9.31 37.16 0.35 -2.38 16 2 C 0.14 2.79 3.02 -66.87 -0.20 2.59 16 3 H 0.07 1.48 7.60 -51.93 -0.39 1.09 16 4 C -0.10 -1.55 2.92 -89.25 -0.26 -1.81 16 5 H 0.08 1.21 7.69 -51.93 -0.40 0.81 16 6 C 0.08 1.20 6.13 37.16 0.23 1.42 16 7 O -0.57 -7.35 13.49 -35.23 -0.48 -7.83 16 8 C -0.12 -1.96 6.44 -24.85 -0.16 -2.12 16 9 C 0.11 2.12 6.93 -1.85 -0.01 2.11 16 10 N -0.64 -14.96 2.94 -163.53 -0.48 -15.44 16 11 C 0.58 16.76 7.82 -12.99 -0.10 16.66 16 12 O -0.58 -19.01 15.38 5.20 0.08 -18.93 16 13 C -0.54 -15.43 9.06 -35.63 -0.32 -15.76 16 14 H 0.07 1.85 6.42 -52.49 -0.34 1.51 16 15 C 0.09 2.45 5.49 -17.37 -0.10 2.36 16 16 N -0.77 -23.22 11.85 55.55 0.66 -22.56 16 17 Si 0.91 20.27 29.56 -169.99 -5.03 15.24 16 18 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 19 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 20 H -0.26 -5.69 7.11 56.52 0.40 -5.29 16 21 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 22 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 23 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.05 0.73 8.07 -51.92 -0.42 0.31 16 25 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.37 2.98 9.12 45.56 0.42 3.39 16 27 H 0.07 1.13 7.81 -51.93 -0.41 0.72 16 28 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.08 1.51 6.62 -51.93 -0.34 1.16 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.27 7.33 8.29 -40.82 -0.34 6.99 16 LS Contribution 262.13 15.07 3.95 3.95 Total: -1.00 -34.91 262.13 -5.43 -40.33 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -3.55 Total: 2.16 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: -0.58 Total: 3.07 kcal Atomic # 7 Polarization: -38.18 SS G_CDS: 0.18 Total: -38.00 kcal Atomic # 8 Polarization: -26.36 SS G_CDS: -0.40 Total: -26.75 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.03 Total: 15.24 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -34.91 -5.43 -40.33 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306439330.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.666 kcal (2) G-P(sol) polarization free energy of solvation -34.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds