Wall clock time and date at job start Sun Mar 29 2020 21:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.90030 * 2 1 4 4 C 1.53997 * 109.91511 * 121.09352 * 2 1 3 5 5 H 1.08999 * 110.32676 * 359.35378 * 4 2 1 6 6 C 1.53003 * 110.41442 * 237.18630 * 4 2 1 7 7 O 1.42904 * 109.47504 * 177.87461 * 6 4 2 8 8 C 1.54614 * 105.04804 * 118.24955 * 4 2 1 9 9 C 1.54949 * 102.99996 * 338.06251 * 8 4 2 10 10 N 1.47484 * 110.07455 * 238.81069 * 2 1 3 11 11 C 1.34779 * 127.03977 * 86.03050 * 10 2 1 12 12 O 1.21690 * 119.99440 * 0.02562 * 11 10 2 13 13 C 1.46372 * 120.00313 * 180.02562 * 11 10 2 14 14 H 1.08000 * 119.99682 * 353.99641 * 13 11 10 15 15 C 1.40043 * 119.99925 * 173.99141 * 13 11 10 16 16 N 1.30668 * 120.00060 * 6.19037 * 15 13 11 17 17 Si 1.86802 * 119.99699 * 186.18938 * 15 13 11 18 18 H 1.48498 * 109.47539 * 94.98784 * 17 15 13 19 19 H 1.48509 * 109.46955 * 214.98407 * 17 15 13 20 20 H 1.48499 * 109.47485 * 334.98182 * 17 15 13 21 21 H 1.08996 * 109.47085 * 298.90311 * 1 2 3 22 22 H 1.08997 * 109.47052 * 58.91155 * 1 2 3 23 23 H 1.09003 * 109.46859 * 178.90602 * 1 2 3 24 24 H 1.09007 * 109.46954 * 297.87203 * 6 4 2 25 25 H 1.08997 * 109.47150 * 57.86872 * 6 4 2 26 26 H 0.96701 * 113.99958 * 179.97438 * 7 6 4 27 27 H 1.09001 * 110.73986 * 96.48527 * 8 4 2 28 28 H 1.08992 * 110.74578 * 219.63177 * 8 4 2 29 29 H 1.08993 * 110.66332 * 155.90757 * 9 8 4 30 30 H 1.08999 * 110.65449 * 279.02484 * 9 8 4 31 31 H 0.97003 * 119.99520 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9011 1.0250 0.0000 4 6 2.0546 -0.7477 1.2399 5 1 1.2226 -1.1015 1.8488 6 6 2.9670 0.1618 2.0652 7 8 3.4021 -0.5346 3.2348 8 6 2.8558 -1.9446 0.6776 9 6 2.2704 -2.1178 -0.7465 10 7 2.0362 -0.7174 -1.1850 11 6 2.2450 -0.2074 -2.4150 12 8 2.0096 0.9661 -2.6350 13 6 2.7547 -1.0649 -3.4861 14 1 3.0552 -2.0793 -3.2689 15 6 2.8527 -0.5701 -4.7925 16 7 2.6050 0.6899 -5.0342 17 14 3.3377 -1.7114 -6.1896 18 1 2.1144 -2.2270 -6.8550 19 1 4.1603 -0.9652 -7.1755 20 1 4.1242 -2.8491 -5.6490 21 1 -0.3633 0.4967 0.8996 22 1 -0.3633 0.5306 -0.8800 23 1 -0.3633 -1.0275 -0.0196 24 1 3.8335 0.4457 1.4680 25 1 2.4186 1.0571 2.3583 26 1 3.9858 -0.0171 3.8063 27 1 3.9192 -1.7099 0.6319 28 1 2.6849 -2.8391 1.2766 29 1 2.9880 -2.6142 -1.3996 30 1 1.3325 -2.6722 -0.7119 31 1 2.6725 1.0325 -5.9392 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306439330.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:21 Heat of formation + Delta-G solvation = -120.449748 kcal Electronic energy + Delta-G solvation = -14668.765933 eV Core-core repulsion = 12141.678157 eV Total energy + Delta-G solvation = -2527.087775 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.57420 -38.29913 -36.99000 -34.66385 -32.70329 -31.85444 -28.84257 -28.00052 -24.60013 -23.71007 -21.55476 -20.43201 -18.54890 -18.12026 -17.71108 -16.75560 -16.17002 -15.67071 -15.31484 -14.93890 -14.42618 -14.03746 -13.84455 -13.69140 -13.41758 -12.94792 -12.86831 -12.74365 -12.58806 -12.26872 -11.96638 -11.77623 -11.63636 -11.47231 -10.95035 -10.84413 -9.86271 -9.14683 -8.32173 -6.85843 1.38217 1.39652 1.55591 2.21920 2.44180 2.80427 3.21079 3.54549 3.77159 3.87781 4.08938 4.36020 4.41789 4.45616 4.51444 4.60958 4.75380 4.76452 4.85967 5.00711 5.12997 5.18026 5.30226 5.34006 5.38513 5.66729 6.04383 6.43846 6.85455 6.90599 7.50154 8.45176 8.65667 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.046123 B = 0.008288 C = 0.007804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.927022 B = 3377.488057 C = 3586.901078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.133 3.867 3 H 0.042 0.958 4 C -0.088 4.088 5 H 0.105 0.895 6 C 0.091 3.909 7 O -0.580 6.580 8 C -0.110 4.110 9 C 0.106 3.894 10 N -0.650 5.650 11 C 0.558 3.442 12 O -0.634 6.634 13 C -0.567 4.567 14 H 0.087 0.913 15 C 0.028 3.972 16 N -0.823 5.823 17 Si 0.998 3.002 18 H -0.262 1.262 19 H -0.271 1.271 20 H -0.247 1.247 21 H 0.086 0.914 22 H 0.021 0.979 23 H 0.064 0.936 24 H 0.033 0.967 25 H 0.058 0.942 26 H 0.397 0.603 27 H 0.059 0.941 28 H 0.100 0.900 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.614 -6.308 11.799 13.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.029 3.971 3 H 0.060 0.940 4 C -0.107 4.107 5 H 0.123 0.877 6 C 0.013 3.987 7 O -0.388 6.388 8 C -0.149 4.149 9 C -0.017 4.017 10 N -0.387 5.387 11 C 0.365 3.635 12 O -0.521 6.521 13 C -0.604 4.604 14 H 0.105 0.895 15 C -0.187 4.187 16 N -0.453 5.453 17 Si 0.817 3.183 18 H -0.187 1.187 19 H -0.196 1.196 20 H -0.171 1.171 21 H 0.105 0.895 22 H 0.040 0.960 23 H 0.083 0.917 24 H 0.051 0.949 25 H 0.076 0.924 26 H 0.246 0.754 27 H 0.078 0.922 28 H 0.119 0.881 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.131 -5.949 11.220 12.700 hybrid contribution 0.441 0.575 -0.655 0.977 sum 0.572 -5.373 10.565 11.867 Atomic orbital electron populations 1.22040 0.94951 1.02085 1.01210 1.21310 0.94357 0.95688 0.85770 0.93995 1.22025 0.98909 0.95771 0.93967 0.87716 1.22078 0.96444 0.93902 0.86232 1.86393 1.70620 1.45679 1.36126 1.22632 0.98992 0.98609 0.94629 1.22505 0.99985 0.83899 0.95305 1.49034 1.69520 1.11121 1.09050 1.18353 0.77595 0.86881 0.80705 1.90545 1.59539 1.19876 1.82146 1.21394 1.46066 1.00109 0.92808 0.89493 1.27007 0.92281 0.96637 1.02745 1.70200 1.36899 1.16112 1.22083 0.85008 0.79035 0.78173 0.76092 1.18710 1.19607 1.17053 0.89536 0.95971 0.91656 0.94905 0.92415 0.75372 0.92189 0.88123 0.91179 0.91411 0.91541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.06 9.31 71.98 0.67 -4.39 16 2 C 0.13 5.22 3.02 45.14 0.14 5.36 16 3 H 0.04 1.85 7.60 -2.38 -0.02 1.83 16 4 C -0.09 -2.57 2.92 -9.91 -0.03 -2.60 16 5 H 0.10 2.65 7.69 -2.39 -0.02 2.63 16 6 C 0.09 2.37 6.13 71.98 0.44 2.81 16 7 O -0.58 -12.87 13.49 -148.98 -2.01 -14.88 16 8 C -0.11 -3.26 6.44 31.81 0.20 -3.05 16 9 C 0.11 3.88 6.93 86.64 0.60 4.48 16 10 N -0.65 -30.83 2.94 -789.50 -2.32 -33.15 16 11 C 0.56 33.72 7.82 86.36 0.68 34.40 16 12 O -0.63 -44.09 15.38 -4.32 -0.07 -44.16 16 13 C -0.57 -33.07 9.06 24.83 0.22 -32.85 16 14 H 0.09 4.58 6.42 -2.91 -0.02 4.56 16 15 C 0.03 1.60 5.49 85.30 0.47 2.07 16 16 N -0.82 -51.48 11.85 21.83 0.26 -51.22 16 17 Si 1.00 41.62 29.56 68.60 2.03 43.65 16 18 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 19 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 20 H -0.25 -9.54 7.11 99.48 0.71 -8.83 16 21 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 22 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 23 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 24 H 0.03 0.95 8.07 -2.38 -0.02 0.93 16 25 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.40 5.01 9.12 -74.06 -0.68 4.34 16 27 H 0.06 1.87 7.81 -2.39 -0.02 1.85 16 28 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 29 H 0.07 2.64 6.62 -2.39 -0.02 2.63 16 30 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.27 15.49 8.29 -92.71 -0.77 14.72 16 Total: -1.00 -79.31 262.13 1.74 -77.57 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: 0.45 Total: 15.96 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: 3.39 Total: 6.23 kcal Atomic # 7 Polarization: -82.30 SS G_CDS: -2.06 Total: -84.36 kcal Atomic # 8 Polarization: -56.96 SS G_CDS: -2.08 Total: -59.04 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.65 kcal Total: -79.31 1.74 -77.57 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306439330.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.879 kcal (2) G-P(sol) polarization free energy of solvation -79.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds