Wall clock time and date at job start Sun Mar 29 2020 22:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46849 * 110.99935 * 2 1 4 4 C 1.53037 * 109.52047 * 185.83507 * 3 2 1 5 5 C 1.53117 * 109.28023 * 300.82093 * 4 3 2 6 6 C 1.53119 * 109.15335 * 57.66056 * 5 4 3 7 7 C 1.46849 * 110.99601 * 124.20765 * 2 1 3 8 8 H 1.09010 * 109.46406 * 294.16238 * 7 2 1 9 9 C 1.50697 * 109.46386 * 54.14171 * 7 2 1 10 10 O 1.21209 * 119.99859 * 20.02377 * 9 7 2 11 11 O 1.34313 * 119.99940 * 200.01788 * 9 7 2 12 12 C 1.34923 * 116.99743 * 180.02562 * 11 9 7 13 13 H 1.07998 * 120.00331 * 0.02562 * 12 11 9 14 14 C 1.38751 * 119.99775 * 179.97438 * 12 11 9 15 15 N 1.31441 * 120.00136 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99821 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47297 * 180.02562 * 16 14 12 18 18 H 1.48503 * 109.47261 * 60.00389 * 16 14 12 19 19 H 1.48500 * 109.47454 * 300.00382 * 16 14 12 20 20 H 1.09000 * 109.47180 * 295.79796 * 1 2 3 21 21 H 1.08996 * 109.46774 * 55.79196 * 1 2 3 22 22 H 1.08996 * 109.47184 * 175.79076 * 1 2 3 23 23 H 1.08993 * 109.45886 * 305.84983 * 3 2 1 24 24 H 1.09005 * 109.46307 * 65.82210 * 3 2 1 25 25 H 1.09003 * 109.50556 * 60.75973 * 4 3 2 26 26 H 1.08998 * 109.50174 * 180.87846 * 4 3 2 27 27 H 1.09002 * 109.52021 * 177.56164 * 5 4 3 28 28 H 1.09004 * 109.52009 * 297.74577 * 5 4 3 29 29 H 1.09005 * 109.49445 * 182.39455 * 6 5 4 30 30 H 1.08997 * 109.51172 * 62.27946 * 6 5 4 31 31 H 0.96998 * 120.00069 * 0.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9953 1.3710 0.0000 4 6 3.5182 1.3341 -0.1466 5 6 4.1188 0.5370 1.0145 6 6 3.5181 -0.8715 1.0207 7 6 1.9952 -0.7708 1.1338 8 1 1.7326 -0.2706 2.0661 9 6 1.3981 -2.1543 1.1207 10 8 0.9170 -2.5971 0.1001 11 8 1.3991 -2.8968 2.2400 12 6 0.8495 -4.1264 2.1599 13 1 0.4349 -4.4727 1.2247 14 6 0.8177 -4.9463 3.2787 15 7 1.3227 -4.5251 4.4168 16 14 0.0574 -6.6489 3.1675 17 1 0.1474 -7.3186 4.4900 18 1 0.7882 -7.4523 2.1547 19 1 -1.3683 -6.5295 2.7697 20 1 -0.3633 0.4472 0.9252 21 1 -0.3633 0.5777 -0.8499 22 1 -0.3633 -1.0248 -0.0754 23 1 1.5635 1.9256 -0.8330 24 1 1.7325 1.8609 0.9376 25 1 3.7815 0.8566 -1.0905 26 1 3.9099 2.3512 -0.1309 27 1 5.1998 0.4714 0.8907 28 1 3.8887 1.0355 1.9561 29 1 3.9100 -1.4303 1.8706 30 1 3.7812 -1.3836 0.0952 31 1 1.7171 -3.6408 4.4746 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306445031.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:11 Heat of formation + Delta-G solvation = -86.067832 kcal Electronic energy + Delta-G solvation = -14778.938712 eV Core-core repulsion = 12253.341849 eV Total energy + Delta-G solvation = -2525.596863 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.75132 -37.98314 -35.20455 -33.25192 -32.10055 -30.95092 -26.73178 -25.09872 -23.48590 -22.67985 -20.50470 -19.33835 -17.95975 -16.65582 -15.64370 -15.06490 -14.76514 -14.56157 -14.16896 -13.83233 -13.62556 -13.12179 -12.86721 -12.45225 -12.01953 -11.47582 -11.24896 -11.05769 -10.83405 -10.70297 -10.60528 -10.33381 -10.22887 -10.12372 -9.72137 -8.85486 -8.50218 -8.05823 -6.72122 -4.08848 3.23259 3.30244 3.51777 3.52772 3.78096 4.22988 4.56069 4.90334 5.01514 5.10877 5.18113 5.37520 5.43706 5.61703 5.70980 5.71885 5.76547 5.89597 5.98475 6.08176 6.16596 6.29899 6.43112 6.50015 6.55383 7.23333 7.34018 7.65032 8.44614 8.55160 9.09258 9.79634 10.72850 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.052504 B = 0.008111 C = 0.007470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.167290 B = 3451.283047 C = 3747.336311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.521 5.521 3 C 0.057 3.943 4 C -0.118 4.118 5 C -0.118 4.118 6 C -0.106 4.106 7 C 0.106 3.894 8 H 0.060 0.940 9 C 0.405 3.595 10 O -0.532 6.532 11 O -0.240 6.240 12 C -0.462 4.462 13 H 0.086 0.914 14 C 0.013 3.987 15 N -0.884 5.884 16 Si 1.098 2.902 17 H -0.274 1.274 18 H -0.281 1.281 19 H -0.282 1.282 20 H 0.018 0.982 21 H 0.065 0.935 22 H 0.093 0.907 23 H 0.076 0.924 24 H 0.031 0.969 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.974 10.286 -5.103 11.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.247 5.247 3 C -0.071 4.071 4 C -0.156 4.156 5 C -0.156 4.156 6 C -0.144 4.144 7 C -0.003 4.003 8 H 0.077 0.923 9 C 0.250 3.750 10 O -0.427 6.427 11 O -0.147 6.147 12 C -0.538 4.538 13 H 0.104 0.896 14 C -0.192 4.192 15 N -0.518 5.518 16 Si 0.922 3.078 17 H -0.199 1.199 18 H -0.207 1.207 19 H -0.208 1.208 20 H 0.037 0.963 21 H 0.083 0.917 22 H 0.111 0.889 23 H 0.094 0.906 24 H 0.049 0.951 25 H 0.091 0.909 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.079 0.921 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.665 8.537 -4.868 10.182 hybrid contribution -0.004 1.879 -0.233 1.893 sum 2.661 10.416 -5.100 11.899 Atomic orbital electron populations 1.22589 0.86688 1.04624 0.99393 1.61612 1.08360 1.12397 1.42354 1.22120 0.95656 0.88993 1.00317 1.21617 0.94508 0.99850 0.99598 1.21587 0.99956 0.95534 0.98524 1.21532 0.91880 0.97463 1.03556 1.20955 0.95802 0.90604 0.92950 0.92271 1.22754 0.81374 0.87840 0.83007 1.90522 1.46080 1.72667 1.33447 1.83607 1.68069 1.27894 1.35180 1.22088 1.41183 0.89205 1.01329 0.89574 1.26590 0.97202 1.04860 0.90577 1.70557 1.34009 1.21520 1.25708 0.83081 0.76001 0.72214 0.76463 1.19902 1.20713 1.20763 0.96320 0.91666 0.88886 0.90595 0.95095 0.90945 0.91618 0.91419 0.92080 0.90448 0.90592 0.91063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.26 9.10 60.07 0.55 0.80 16 2 N -0.52 -9.26 4.51 -236.32 -1.07 -10.33 16 3 C 0.06 0.77 5.46 -3.83 -0.02 0.75 16 4 C -0.12 -1.41 6.09 -26.65 -0.16 -1.57 16 5 C -0.12 -1.52 6.00 -26.61 -0.16 -1.68 16 6 C -0.11 -1.80 5.36 -26.65 -0.14 -1.95 16 7 C 0.11 2.10 2.35 -68.87 -0.16 1.94 16 8 H 0.06 1.14 8.14 -51.92 -0.42 0.71 16 9 C 0.40 10.33 6.34 36.00 0.23 10.56 16 10 O -0.53 -14.76 13.76 -19.05 -0.26 -15.03 16 11 O -0.24 -6.93 9.15 -20.72 -0.19 -7.12 16 12 C -0.46 -14.01 9.64 30.92 0.30 -13.71 16 13 H 0.09 2.67 6.86 -52.49 -0.36 2.31 16 14 C 0.01 0.36 5.49 -17.53 -0.10 0.27 16 15 N -0.88 -26.69 13.69 55.48 0.76 -25.93 16 16 Si 1.10 24.95 29.92 -169.99 -5.09 19.86 16 17 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 18 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 19 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 20 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 21 H 0.06 0.95 8.09 -51.93 -0.42 0.53 16 22 H 0.09 1.96 5.62 -51.93 -0.29 1.67 16 23 H 0.08 0.90 8.08 -51.93 -0.42 0.48 16 24 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 30 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.28 8.51 7.97 -40.82 -0.33 8.19 16 LS Contribution 258.10 15.07 3.89 3.89 Total: -1.00 -33.27 258.10 -6.04 -39.32 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -4.42 Total: -0.07 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: 0.33 Total: -4.60 kcal Atomic # 7 Polarization: -35.95 SS G_CDS: -0.31 Total: -36.26 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: -0.45 Total: -22.14 kcal Atomic # 14 Polarization: 24.95 SS G_CDS: -5.09 Total: 19.86 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -33.27 -6.04 -39.32 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306445031.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.752 kcal (2) G-P(sol) polarization free energy of solvation -33.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds