Wall clock time and date at job start Sun Mar 29 2020 22:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46849 * 110.99935 * 2 1 4 4 C 1.53037 * 109.52047 * 185.83507 * 3 2 1 5 5 C 1.53117 * 109.28023 * 300.82093 * 4 3 2 6 6 C 1.53119 * 109.15335 * 57.66056 * 5 4 3 7 7 C 1.46849 * 110.99601 * 124.20765 * 2 1 3 8 8 H 1.09010 * 109.46406 * 294.16238 * 7 2 1 9 9 C 1.50697 * 109.46386 * 54.14171 * 7 2 1 10 10 O 1.21209 * 119.99859 * 20.02377 * 9 7 2 11 11 O 1.34313 * 119.99940 * 200.01788 * 9 7 2 12 12 C 1.34923 * 116.99743 * 180.02562 * 11 9 7 13 13 H 1.07998 * 120.00331 * 0.02562 * 12 11 9 14 14 C 1.38751 * 119.99775 * 179.97438 * 12 11 9 15 15 N 1.31441 * 120.00136 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99821 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47297 * 180.02562 * 16 14 12 18 18 H 1.48503 * 109.47261 * 60.00389 * 16 14 12 19 19 H 1.48500 * 109.47454 * 300.00382 * 16 14 12 20 20 H 1.09000 * 109.47180 * 295.79796 * 1 2 3 21 21 H 1.08996 * 109.46774 * 55.79196 * 1 2 3 22 22 H 1.08996 * 109.47184 * 175.79076 * 1 2 3 23 23 H 1.08993 * 109.45886 * 305.84983 * 3 2 1 24 24 H 1.09005 * 109.46307 * 65.82210 * 3 2 1 25 25 H 1.09003 * 109.50556 * 60.75973 * 4 3 2 26 26 H 1.08998 * 109.50174 * 180.87846 * 4 3 2 27 27 H 1.09002 * 109.52021 * 177.56164 * 5 4 3 28 28 H 1.09004 * 109.52009 * 297.74577 * 5 4 3 29 29 H 1.09005 * 109.49445 * 182.39455 * 6 5 4 30 30 H 1.08997 * 109.51172 * 62.27946 * 6 5 4 31 31 H 0.96998 * 120.00069 * 0.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9953 1.3710 0.0000 4 6 3.5182 1.3341 -0.1466 5 6 4.1188 0.5370 1.0145 6 6 3.5181 -0.8715 1.0207 7 6 1.9952 -0.7708 1.1338 8 1 1.7326 -0.2706 2.0661 9 6 1.3981 -2.1543 1.1207 10 8 0.9170 -2.5971 0.1001 11 8 1.3991 -2.8968 2.2400 12 6 0.8495 -4.1264 2.1599 13 1 0.4349 -4.4727 1.2247 14 6 0.8177 -4.9463 3.2787 15 7 1.3227 -4.5251 4.4168 16 14 0.0574 -6.6489 3.1675 17 1 0.1474 -7.3186 4.4900 18 1 0.7882 -7.4523 2.1547 19 1 -1.3683 -6.5295 2.7697 20 1 -0.3633 0.4472 0.9252 21 1 -0.3633 0.5777 -0.8499 22 1 -0.3633 -1.0248 -0.0754 23 1 1.5635 1.9256 -0.8330 24 1 1.7325 1.8609 0.9376 25 1 3.7815 0.8566 -1.0905 26 1 3.9099 2.3512 -0.1309 27 1 5.1998 0.4714 0.8907 28 1 3.8887 1.0355 1.9561 29 1 3.9100 -1.4303 1.8706 30 1 3.7812 -1.3836 0.0952 31 1 1.7171 -3.6408 4.4746 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306445031.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:10 Heat of formation + Delta-G solvation = -109.222480 kcal Electronic energy + Delta-G solvation = -14779.942773 eV Core-core repulsion = 12253.341849 eV Total energy + Delta-G solvation = -2526.600924 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.59544 -39.62871 -37.30957 -34.56407 -34.29086 -32.32728 -28.12577 -27.12713 -25.12462 -23.96482 -22.18718 -20.71000 -20.16065 -18.57825 -17.49237 -16.85389 -16.42197 -16.05360 -15.59491 -15.47283 -15.24783 -14.55909 -14.08443 -14.01290 -13.50851 -13.12478 -12.95838 -12.75816 -12.41844 -12.25995 -11.95209 -11.92110 -11.86935 -11.68564 -11.39557 -10.82042 -10.70030 -9.43223 -9.06797 -6.46448 1.29004 1.45809 1.66268 1.78120 2.07381 2.49953 2.90639 2.95191 3.73146 3.82820 3.92657 4.09559 4.11569 4.33617 4.44292 4.50096 4.54686 4.68785 4.75289 4.89590 4.97342 4.99354 5.10606 5.17019 5.27270 5.40403 5.79908 6.05675 6.14469 6.36391 6.85446 7.58730 8.39694 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.052504 B = 0.008111 C = 0.007470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.167290 B = 3451.283047 C = 3747.336311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.536 5.536 3 C 0.053 3.947 4 C -0.114 4.114 5 C -0.111 4.111 6 C -0.105 4.105 7 C 0.114 3.886 8 H 0.065 0.935 9 C 0.404 3.596 10 O -0.558 6.558 11 O -0.265 6.265 12 C -0.494 4.494 13 H 0.070 0.930 14 C -0.025 4.025 15 N -0.899 5.899 16 Si 1.144 2.856 17 H -0.261 1.261 18 H -0.264 1.264 19 H -0.265 1.265 20 H 0.026 0.974 21 H 0.096 0.904 22 H 0.048 0.952 23 H 0.098 0.902 24 H 0.042 0.958 25 H 0.066 0.934 26 H 0.102 0.898 27 H 0.090 0.910 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.501 11.697 -5.553 13.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.263 5.263 3 C -0.074 4.074 4 C -0.152 4.152 5 C -0.148 4.148 6 C -0.143 4.143 7 C 0.004 3.996 8 H 0.083 0.917 9 C 0.250 3.750 10 O -0.453 6.453 11 O -0.174 6.174 12 C -0.570 4.570 13 H 0.087 0.913 14 C -0.224 4.224 15 N -0.533 5.533 16 Si 0.959 3.041 17 H -0.185 1.185 18 H -0.189 1.189 19 H -0.189 1.189 20 H 0.044 0.956 21 H 0.115 0.885 22 H 0.067 0.933 23 H 0.117 0.883 24 H 0.060 0.940 25 H 0.085 0.915 26 H 0.121 0.879 27 H 0.109 0.891 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.208 9.995 -5.334 11.775 hybrid contribution -0.165 1.552 -0.187 1.572 sum 3.043 11.548 -5.521 13.156 Atomic orbital electron populations 1.22511 0.86976 1.02383 1.01197 1.61662 1.08385 1.15051 1.41201 1.22346 0.96840 0.86337 1.01845 1.21651 0.93199 1.01655 0.98650 1.21593 1.01069 0.92435 0.99723 1.21562 0.89910 1.00555 1.02257 1.21050 0.97229 0.87012 0.94307 0.91686 1.24122 0.79689 0.89438 0.81711 1.90494 1.46861 1.73786 1.34209 1.83647 1.68952 1.27942 1.36902 1.22253 1.42826 0.90531 1.01384 0.91257 1.28402 0.96293 1.08272 0.89469 1.70678 1.35213 1.20977 1.26398 0.82620 0.76231 0.67681 0.77580 1.18490 1.18924 1.18945 0.95558 0.88550 0.93315 0.88338 0.93994 0.91538 0.87936 0.89115 0.90970 0.91690 0.91999 0.92539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.59 9.10 127.69 1.16 1.75 16 2 N -0.54 -18.35 4.51 -901.58 -4.07 -22.42 16 3 C 0.05 1.24 5.46 86.33 0.47 1.71 16 4 C -0.11 -2.27 6.09 30.65 0.19 -2.08 16 5 C -0.11 -2.50 6.00 30.67 0.18 -2.32 16 6 C -0.10 -3.49 5.36 30.65 0.16 -3.33 16 7 C 0.11 4.48 2.35 44.19 0.10 4.58 16 8 H 0.07 2.47 8.14 -2.38 -0.02 2.45 16 9 C 0.40 21.32 6.34 71.23 0.45 21.77 16 10 O -0.56 -32.21 13.76 20.78 0.29 -31.93 16 11 O -0.27 -16.00 9.15 14.81 0.14 -15.86 16 12 C -0.49 -31.06 9.64 67.94 0.66 -30.41 16 13 H 0.07 4.48 6.86 -2.91 -0.02 4.46 16 14 C -0.03 -1.50 5.49 84.87 0.47 -1.03 16 15 N -0.90 -55.22 13.69 21.62 0.30 -54.93 16 16 Si 1.14 49.91 29.92 68.60 2.05 51.96 16 17 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 18 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 19 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 20 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 21 H 0.10 2.64 8.09 -2.39 -0.02 2.62 16 22 H 0.05 2.10 5.62 -2.39 -0.01 2.09 16 23 H 0.10 1.91 8.08 -2.39 -0.02 1.89 16 24 H 0.04 0.92 8.14 -2.38 -0.02 0.91 16 25 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 29 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 30 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.27 16.71 7.97 -92.71 -0.74 15.97 16 Total: -1.00 -74.78 258.10 3.69 -71.10 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: 1.14 Total: 11.42 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: 3.85 Total: -9.35 kcal Atomic # 7 Polarization: -73.57 SS G_CDS: -3.77 Total: -77.34 kcal Atomic # 8 Polarization: -48.21 SS G_CDS: 0.42 Total: -47.79 kcal Atomic # 14 Polarization: 49.91 SS G_CDS: 2.05 Total: 51.96 kcal Total: -74.78 3.69 -71.10 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306445031.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.125 kcal (2) G-P(sol) polarization free energy of solvation -74.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds