Wall clock time and date at job start Sun Mar 29 2020 22:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46850 * 110.99910 * 2 1 4 4 C 1.53033 * 109.52021 * 174.16107 * 3 2 1 5 5 C 1.53117 * 109.28196 * 59.17821 * 4 3 2 6 6 C 1.53117 * 109.15945 * 302.34618 * 5 4 3 7 7 C 1.46845 * 110.99954 * 235.78893 * 2 1 3 8 8 H 1.09002 * 109.46296 * 65.82325 * 7 2 1 9 9 C 1.50700 * 109.46474 * 305.84298 * 7 2 1 10 10 O 1.21210 * 119.99438 * 339.98416 * 9 7 2 11 11 O 1.34312 * 120.00345 * 159.98005 * 9 7 2 12 12 C 1.34918 * 117.00220 * 180.02562 * 11 9 7 13 13 H 1.07998 * 119.99645 * 359.97438 * 12 11 9 14 14 C 1.38751 * 120.00125 * 180.02562 * 12 11 9 15 15 N 1.31437 * 120.00002 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00300 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47174 * 89.99807 * 16 14 12 18 18 H 1.48495 * 109.47344 * 210.00114 * 16 14 12 19 19 H 1.48510 * 109.46766 * 329.99965 * 16 14 12 20 20 H 1.08998 * 109.47039 * 184.20740 * 1 2 3 21 21 H 1.08997 * 109.47215 * 304.21307 * 1 2 3 22 22 H 1.09003 * 109.46876 * 64.21334 * 1 2 3 23 23 H 1.09007 * 109.46004 * 294.17719 * 3 2 1 24 24 H 1.08998 * 109.45950 * 54.14209 * 3 2 1 25 25 H 1.09008 * 109.49978 * 179.12138 * 4 3 2 26 26 H 1.08998 * 109.50499 * 299.23443 * 4 3 2 27 27 H 1.09002 * 109.52444 * 62.24773 * 5 4 3 28 28 H 1.08999 * 109.52241 * 182.37072 * 5 4 3 29 29 H 1.09004 * 109.49786 * 297.71013 * 6 5 4 30 30 H 1.09001 * 109.50413 * 177.59473 * 6 5 4 31 31 H 0.97002 * 120.00325 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3710 0.0000 4 6 3.5181 1.3342 0.1467 5 6 4.1188 0.5369 -1.0143 6 6 3.5181 -0.8715 -1.0208 7 6 1.9953 -0.7708 -1.1337 8 1 1.7325 -0.2709 -2.0660 9 6 1.3985 -2.1545 -1.1204 10 8 0.9175 -2.5972 -0.0997 11 8 1.3995 -2.8972 -2.2395 12 6 0.8492 -4.1264 -2.1594 13 1 0.4342 -4.4723 -1.2243 14 6 0.8175 -4.9466 -3.2781 15 7 1.3230 -4.5258 -4.4161 16 14 0.0563 -6.6488 -3.1671 17 1 -1.3901 -6.5665 -3.4933 18 1 0.7301 -7.5562 -4.1303 19 1 0.2237 -7.1769 -1.7892 20 1 -0.3633 -1.0249 0.0754 21 1 -0.3633 0.5778 0.8498 22 1 -0.3633 0.4471 -0.9254 23 1 1.7324 1.8609 -0.9376 24 1 1.5634 1.9257 0.8329 25 1 3.9099 2.3513 0.1310 26 1 3.7813 0.8568 1.0906 27 1 3.8887 1.0354 -1.9560 28 1 5.1999 0.4724 -0.8911 29 1 3.7814 -1.3835 -0.0952 30 1 3.9099 -1.4303 -1.8707 31 1 1.3012 -5.0992 -5.1981 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306445032.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:13 Heat of formation + Delta-G solvation = -80.026126 kcal Electronic energy + Delta-G solvation = -14741.490040 eV Core-core repulsion = 12216.155165 eV Total energy + Delta-G solvation = -2525.334875 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.64671 -37.86411 -35.03787 -33.16572 -32.12078 -30.88560 -26.68839 -25.44900 -23.51777 -22.60400 -20.32526 -19.18384 -17.67844 -16.66867 -15.43825 -14.95073 -14.60444 -14.54135 -14.14296 -14.07010 -13.32554 -12.92512 -12.78324 -12.27945 -11.92805 -11.59871 -11.37193 -11.17940 -11.00973 -10.66615 -10.53786 -10.41388 -10.25703 -10.05921 -9.75998 -8.79400 -8.54219 -7.97612 -6.38054 -4.05745 3.12914 3.20360 3.26633 3.54461 3.82333 4.19027 4.65815 4.97642 5.07864 5.16040 5.19723 5.45496 5.53247 5.70112 5.78766 5.79552 5.84740 5.97882 6.05855 6.17014 6.24213 6.39625 6.50517 6.59542 6.71207 7.32104 7.38043 7.48103 7.99210 8.77792 9.11115 9.91832 10.80154 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.052470 B = 0.008069 C = 0.007433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.512180 B = 3469.336732 C = 3765.906878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.522 5.522 3 C 0.057 3.943 4 C -0.118 4.118 5 C -0.118 4.118 6 C -0.106 4.106 7 C 0.106 3.894 8 H 0.061 0.939 9 C 0.403 3.597 10 O -0.538 6.538 11 O -0.216 6.216 12 C -0.381 4.381 13 H 0.095 0.905 14 C 0.042 3.958 15 N -0.867 5.867 16 Si 0.942 3.058 17 H -0.274 1.274 18 H -0.278 1.278 19 H -0.267 1.267 20 H 0.093 0.907 21 H 0.063 0.937 22 H 0.018 0.982 23 H 0.031 0.969 24 H 0.074 0.926 25 H 0.064 0.936 26 H 0.071 0.929 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.922 9.819 4.606 11.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.248 5.248 3 C -0.071 4.071 4 C -0.156 4.156 5 C -0.156 4.156 6 C -0.144 4.144 7 C -0.004 4.004 8 H 0.079 0.921 9 C 0.248 3.752 10 O -0.433 6.433 11 O -0.123 6.123 12 C -0.457 4.457 13 H 0.113 0.887 14 C -0.162 4.162 15 N -0.504 5.504 16 Si 0.767 3.233 17 H -0.199 1.199 18 H -0.203 1.203 19 H -0.191 1.191 20 H 0.111 0.889 21 H 0.082 0.918 22 H 0.037 0.963 23 H 0.049 0.951 24 H 0.093 0.907 25 H 0.083 0.917 26 H 0.090 0.910 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.098 0.902 31 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.981 9.374 5.058 11.060 hybrid contribution -0.704 -0.397 -0.771 1.117 sum 2.277 8.976 4.287 10.205 Atomic orbital electron populations 1.22585 0.86758 1.04609 0.99326 1.61614 1.08314 1.12326 1.42524 1.22112 0.95632 0.89083 1.00251 1.21614 0.94546 0.99783 0.99614 1.21585 0.99886 0.95663 0.98478 1.21527 0.91938 0.97353 1.03595 1.20954 0.95779 0.90731 0.92896 0.92103 1.22905 0.81061 0.88006 0.83237 1.90519 1.46356 1.72799 1.33670 1.83880 1.67295 1.27243 1.33926 1.21210 1.37646 0.88277 0.98592 0.88738 1.25316 0.96931 0.99715 0.94249 1.69993 1.42676 1.37184 1.00552 0.85692 0.78856 0.80158 0.78601 1.19939 1.20348 1.19098 0.88853 0.91802 0.96310 0.95108 0.90708 0.91725 0.91000 0.92080 0.91510 0.90689 0.90214 0.92153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.26 9.10 60.07 0.55 0.81 16 2 N -0.52 -9.33 4.51 -236.32 -1.07 -10.40 16 3 C 0.06 0.78 5.46 -3.83 -0.02 0.76 16 4 C -0.12 -1.43 6.09 -26.65 -0.16 -1.59 16 5 C -0.12 -1.55 6.00 -26.61 -0.16 -1.71 16 6 C -0.11 -1.83 5.35 -26.65 -0.14 -1.97 16 7 C 0.11 2.11 2.35 -68.88 -0.16 1.95 16 8 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 9 C 0.40 10.27 6.34 36.01 0.23 10.50 16 10 O -0.54 -14.78 13.76 -19.05 -0.26 -15.04 16 11 O -0.22 -6.33 9.75 -20.70 -0.20 -6.53 16 12 C -0.38 -11.44 9.65 30.92 0.30 -11.14 16 13 H 0.09 2.86 6.86 -52.49 -0.36 2.50 16 14 C 0.04 1.19 5.49 -17.53 -0.10 1.09 16 15 N -0.87 -25.66 13.67 55.48 0.76 -24.91 16 16 Si 0.94 21.58 29.55 -169.99 -5.02 16.55 16 17 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 18 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 19 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 20 H 0.09 1.96 5.63 -51.93 -0.29 1.66 16 21 H 0.06 0.94 8.09 -51.93 -0.42 0.52 16 22 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 23 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 24 H 0.07 0.90 8.09 -51.93 -0.42 0.48 16 25 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 26 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 30 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 31 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 258.65 15.07 3.90 3.90 Total: -1.00 -32.71 258.65 -6.00 -38.71 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: -4.43 Total: -0.97 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: 0.33 Total: -1.32 kcal Atomic # 7 Polarization: -35.00 SS G_CDS: -0.31 Total: -35.31 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: -0.46 Total: -21.57 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -32.71 -6.00 -38.71 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306445032.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.313 kcal (2) G-P(sol) polarization free energy of solvation -32.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds