Wall clock time and date at job start Sun Mar 29 2020 22:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46850 * 110.99910 * 2 1 4 4 C 1.53033 * 109.52021 * 174.16107 * 3 2 1 5 5 C 1.53117 * 109.28196 * 59.17821 * 4 3 2 6 6 C 1.53117 * 109.15945 * 302.34618 * 5 4 3 7 7 C 1.46845 * 110.99954 * 235.78893 * 2 1 3 8 8 H 1.09002 * 109.46296 * 65.82325 * 7 2 1 9 9 C 1.50700 * 109.46474 * 305.84298 * 7 2 1 10 10 O 1.21210 * 119.99438 * 339.98416 * 9 7 2 11 11 O 1.34312 * 120.00345 * 159.98005 * 9 7 2 12 12 C 1.34918 * 117.00220 * 180.02562 * 11 9 7 13 13 H 1.07998 * 119.99645 * 359.97438 * 12 11 9 14 14 C 1.38751 * 120.00125 * 180.02562 * 12 11 9 15 15 N 1.31437 * 120.00002 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00300 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47174 * 89.99807 * 16 14 12 18 18 H 1.48495 * 109.47344 * 210.00114 * 16 14 12 19 19 H 1.48510 * 109.46766 * 329.99965 * 16 14 12 20 20 H 1.08998 * 109.47039 * 184.20740 * 1 2 3 21 21 H 1.08997 * 109.47215 * 304.21307 * 1 2 3 22 22 H 1.09003 * 109.46876 * 64.21334 * 1 2 3 23 23 H 1.09007 * 109.46004 * 294.17719 * 3 2 1 24 24 H 1.08998 * 109.45950 * 54.14209 * 3 2 1 25 25 H 1.09008 * 109.49978 * 179.12138 * 4 3 2 26 26 H 1.08998 * 109.50499 * 299.23443 * 4 3 2 27 27 H 1.09002 * 109.52444 * 62.24773 * 5 4 3 28 28 H 1.08999 * 109.52241 * 182.37072 * 5 4 3 29 29 H 1.09004 * 109.49786 * 297.71013 * 6 5 4 30 30 H 1.09001 * 109.50413 * 177.59473 * 6 5 4 31 31 H 0.97002 * 120.00325 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3710 0.0000 4 6 3.5181 1.3342 0.1467 5 6 4.1188 0.5369 -1.0143 6 6 3.5181 -0.8715 -1.0208 7 6 1.9953 -0.7708 -1.1337 8 1 1.7325 -0.2709 -2.0660 9 6 1.3985 -2.1545 -1.1204 10 8 0.9175 -2.5972 -0.0997 11 8 1.3995 -2.8972 -2.2395 12 6 0.8492 -4.1264 -2.1594 13 1 0.4342 -4.4723 -1.2243 14 6 0.8175 -4.9466 -3.2781 15 7 1.3230 -4.5258 -4.4161 16 14 0.0563 -6.6488 -3.1671 17 1 -1.3901 -6.5665 -3.4933 18 1 0.7301 -7.5562 -4.1303 19 1 0.2237 -7.1769 -1.7892 20 1 -0.3633 -1.0249 0.0754 21 1 -0.3633 0.5778 0.8498 22 1 -0.3633 0.4471 -0.9254 23 1 1.7324 1.8609 -0.9376 24 1 1.5634 1.9257 0.8329 25 1 3.9099 2.3513 0.1310 26 1 3.7813 0.8568 1.0906 27 1 3.8887 1.0354 -1.9560 28 1 5.1999 0.4724 -0.8911 29 1 3.7814 -1.3835 -0.0952 30 1 3.9099 -1.4303 -1.8707 31 1 1.3012 -5.0992 -5.1981 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306445032.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:13 Heat of formation + Delta-G solvation = -102.729291 kcal Electronic energy + Delta-G solvation = -14742.474523 eV Core-core repulsion = 12216.155165 eV Total energy + Delta-G solvation = -2526.319359 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.46429 -39.50984 -37.11597 -34.49880 -34.27684 -32.26789 -28.17454 -27.41580 -25.09179 -23.89352 -21.95095 -20.61387 -19.88511 -18.60616 -17.06971 -16.72137 -16.45833 -16.05617 -15.85437 -15.34308 -14.85179 -14.45128 -14.01458 -13.98536 -13.57313 -13.39669 -12.95045 -12.74004 -12.42020 -12.24932 -12.17331 -12.00343 -11.81443 -11.63053 -11.33169 -10.75505 -10.70286 -9.36282 -8.55856 -6.36073 1.27906 1.32273 1.49793 1.60714 2.05294 2.51721 2.94256 3.01466 3.81009 3.92115 3.99443 4.16033 4.19652 4.40452 4.50737 4.58722 4.68960 4.76067 4.81615 4.95618 5.03778 5.05884 5.13717 5.16133 5.23189 5.45508 5.81279 5.88767 6.14042 6.65825 6.89134 7.76420 8.64966 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.052470 B = 0.008069 C = 0.007433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.512180 B = 3469.336732 C = 3765.906878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.536 5.536 3 C 0.053 3.947 4 C -0.114 4.114 5 C -0.111 4.111 6 C -0.104 4.104 7 C 0.113 3.887 8 H 0.064 0.936 9 C 0.399 3.601 10 O -0.563 6.563 11 O -0.246 6.246 12 C -0.422 4.422 13 H 0.080 0.920 14 C -0.003 4.003 15 N -0.903 5.903 16 Si 1.018 2.982 17 H -0.259 1.259 18 H -0.258 1.258 19 H -0.265 1.265 20 H 0.050 0.950 21 H 0.095 0.905 22 H 0.025 0.975 23 H 0.041 0.959 24 H 0.098 0.902 25 H 0.101 0.899 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.090 0.910 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.368 10.932 4.838 12.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.263 5.263 3 C -0.074 4.074 4 C -0.151 4.151 5 C -0.149 4.149 6 C -0.142 4.142 7 C 0.003 3.997 8 H 0.081 0.919 9 C 0.246 3.754 10 O -0.459 6.459 11 O -0.154 6.154 12 C -0.498 4.498 13 H 0.097 0.903 14 C -0.204 4.204 15 N -0.540 5.540 16 Si 0.836 3.164 17 H -0.184 1.184 18 H -0.182 1.182 19 H -0.189 1.189 20 H 0.069 0.931 21 H 0.113 0.887 22 H 0.044 0.956 23 H 0.059 0.941 24 H 0.116 0.884 25 H 0.120 0.880 26 H 0.085 0.915 27 H 0.089 0.911 28 H 0.108 0.892 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.440 10.524 5.295 12.273 hybrid contribution -0.840 -0.657 -0.788 1.326 sum 2.600 9.867 4.507 11.155 Atomic orbital electron populations 1.22509 0.87000 1.02464 1.01078 1.61661 1.08379 1.14923 1.41307 1.22337 0.96819 0.86483 1.01742 1.21644 0.93242 1.01572 0.98652 1.21588 1.01021 0.92588 0.99653 1.21546 0.90045 1.00401 1.02250 1.21027 0.97190 0.87333 0.94114 0.91858 1.24162 0.79661 0.89573 0.82000 1.90485 1.47176 1.73893 1.34341 1.83902 1.68192 1.27550 1.35766 1.21404 1.39857 0.89530 0.98981 0.90257 1.26539 0.96605 1.03980 0.93229 1.70074 1.43251 1.39248 1.01421 0.84633 0.78531 0.74189 0.79037 1.18403 1.18195 1.18879 0.93139 0.88675 0.95629 0.94103 0.88407 0.88045 0.91521 0.91106 0.89189 0.91959 0.91703 0.91153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.60 9.10 127.69 1.16 1.76 16 2 N -0.54 -18.64 4.51 -901.59 -4.06 -22.71 16 3 C 0.05 1.27 5.46 86.32 0.47 1.74 16 4 C -0.11 -2.33 6.09 30.64 0.19 -2.14 16 5 C -0.11 -2.60 6.00 30.67 0.18 -2.42 16 6 C -0.10 -3.57 5.35 30.65 0.16 -3.41 16 7 C 0.11 4.55 2.35 44.19 0.10 4.65 16 8 H 0.06 2.49 8.14 -2.39 -0.02 2.48 16 9 C 0.40 21.26 6.34 71.24 0.45 21.72 16 10 O -0.56 -32.40 13.76 20.77 0.29 -32.11 16 11 O -0.25 -15.08 9.75 14.88 0.15 -14.93 16 12 C -0.42 -26.42 9.65 67.94 0.66 -25.76 16 13 H 0.08 5.05 6.86 -2.91 -0.02 5.03 16 14 C 0.00 -0.20 5.49 84.87 0.47 0.27 16 15 N -0.90 -54.23 13.67 21.62 0.30 -53.93 16 16 Si 1.02 44.32 29.55 68.60 2.03 46.34 16 17 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 18 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 19 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 20 H 0.05 2.18 5.63 -2.39 -0.01 2.17 16 21 H 0.09 2.63 8.09 -2.39 -0.02 2.61 16 22 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 23 H 0.04 0.93 8.14 -2.38 -0.02 0.91 16 24 H 0.10 1.95 8.09 -2.39 -0.02 1.93 16 25 H 0.10 1.43 8.14 -2.38 -0.02 1.41 16 26 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 30 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 31 H 0.28 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -73.75 258.65 3.64 -70.12 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: 1.10 Total: 10.82 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: 3.85 Total: -3.59 kcal Atomic # 7 Polarization: -72.87 SS G_CDS: -3.77 Total: -76.64 kcal Atomic # 8 Polarization: -47.48 SS G_CDS: 0.43 Total: -47.04 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.34 kcal Total: -73.75 3.64 -70.12 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306445032.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.613 kcal (2) G-P(sol) polarization free energy of solvation -73.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds