Wall clock time and date at job start Sun Mar 29 2020 21:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34229 * 117.00226 * 2 1 4 4 O 1.20823 * 119.99946 * 0.02562 * 3 2 1 5 5 C 1.50706 * 119.99945 * 179.72477 * 3 2 1 6 6 H 1.09005 * 110.64154 * 300.97714 * 5 3 2 7 7 C 1.55150 * 110.71952 * 64.11710 * 5 3 2 8 8 C 1.55127 * 101.48520 * 153.73315 * 7 5 3 9 9 N 1.47419 * 104.94170 * 323.22238 * 8 7 5 10 10 C 1.36933 * 125.65077 * 204.03783 * 9 8 7 11 11 H 1.08002 * 120.00264 * 161.44952 * 10 9 8 12 12 C 1.38814 * 119.99785 * 341.44256 * 10 9 8 13 13 N 1.31625 * 119.99975 * 157.60062 * 12 10 9 14 14 Si 1.86793 * 120.00108 * 337.60647 * 12 10 9 15 15 H 1.48508 * 109.47157 * 84.53611 * 14 12 10 16 16 H 1.48503 * 109.47311 * 204.53158 * 14 12 10 17 17 H 1.48496 * 109.47305 * 324.53478 * 14 12 10 18 18 C 1.47026 * 108.70460 * 24.00254 * 9 8 7 19 19 H 1.08996 * 109.88497 * 239.52141 * 18 9 8 20 20 C 1.53001 * 109.88134 * 118.35797 * 18 9 8 21 21 H 1.09001 * 109.47045 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47089 * 299.99869 * 1 2 3 23 23 H 1.08998 * 109.47223 * 59.99795 * 1 2 3 24 24 H 1.09000 * 111.00723 * 271.94034 * 7 5 3 25 25 H 1.09001 * 111.00749 * 35.79224 * 7 5 3 26 26 H 1.09002 * 110.41693 * 204.29582 * 8 7 5 27 27 H 1.08994 * 110.30022 * 82.09246 * 8 7 5 28 28 H 0.96996 * 120.00039 * 180.02562 * 13 12 10 29 29 H 1.09010 * 109.47050 * 302.19166 * 20 18 9 30 30 H 1.08995 * 109.47548 * 62.19571 * 20 18 9 31 31 H 1.09007 * 109.47060 * 182.19429 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0063 6 1 3.9738 0.7725 0.8837 7 6 4.1533 0.6680 -1.2955 8 6 5.5001 1.4289 -1.4111 9 7 5.2076 2.7937 -0.9368 10 6 5.9098 3.9215 -1.2684 11 1 5.4650 4.8956 -1.1278 12 6 7.1936 3.8129 -1.7851 13 7 7.7004 4.7947 -2.5005 14 14 8.2019 2.2733 -1.4654 15 1 7.8530 1.2358 -2.4690 16 1 9.6473 2.5975 -1.5707 17 1 7.9072 1.7627 -0.1025 18 6 4.0364 2.7436 -0.0495 19 1 3.2410 3.3724 -0.4495 20 6 4.4246 3.2193 1.3520 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 4.3151 -0.4045 -1.1883 25 1 3.5110 0.8811 -2.1501 26 1 5.8364 1.4514 -2.4477 27 1 6.2543 0.9610 -0.7785 28 1 8.5973 4.7186 -2.8619 29 1 5.2333 2.5972 1.7358 30 1 4.7553 4.2568 1.3049 31 1 3.5618 3.1426 2.0137 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306447370.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:55 Heat of formation + Delta-G solvation = -60.467560 kcal Electronic energy + Delta-G solvation = -14817.380625 eV Core-core repulsion = 12292.893872 eV Total energy + Delta-G solvation = -2524.486752 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.48589 -37.93421 -36.20102 -32.72477 -30.72994 -30.37677 -27.89020 -25.72176 -23.96188 -22.12534 -20.79807 -19.10993 -17.66629 -16.82488 -16.55906 -15.98180 -15.06476 -14.68593 -13.71211 -13.52161 -13.19714 -12.81317 -12.77834 -12.25244 -12.09601 -11.74357 -11.55160 -11.21499 -10.85866 -10.76760 -10.68745 -10.34667 -10.25881 -9.99971 -9.92285 -9.40667 -8.66699 -7.05386 -5.92303 -3.22950 2.37759 2.80745 3.34997 3.48894 3.50851 4.56001 4.74272 4.94970 5.02380 5.06718 5.13570 5.18601 5.36712 5.45941 5.53976 5.83088 5.91480 6.06796 6.16064 6.31575 6.36540 6.48813 6.56585 6.66775 6.84216 7.02453 7.72462 7.90752 8.33844 8.85352 9.70420 10.17816 11.23823 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.051715 B = 0.009109 C = 0.008521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.297661 B = 3073.074515 C = 3285.161439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.361 6.361 3 C 0.473 3.527 4 O -0.502 6.502 5 C -0.095 4.095 6 H 0.113 0.887 7 C -0.117 4.117 8 C 0.110 3.890 9 N -0.603 5.603 10 C -0.236 4.236 11 H 0.093 0.907 12 C 0.021 3.979 13 N -0.909 5.909 14 Si 0.881 3.119 15 H -0.285 1.285 16 H -0.303 1.303 17 H -0.276 1.276 18 C 0.168 3.832 19 H 0.065 0.935 20 C -0.155 4.155 21 H 0.098 0.902 22 H 0.060 0.940 23 H 0.061 0.939 24 H 0.079 0.921 25 H 0.074 0.926 26 H 0.065 0.935 27 H 0.029 0.971 28 H 0.263 0.737 29 H 0.049 0.951 30 H 0.063 0.937 31 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.427 -11.237 5.325 16.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.278 6.278 3 C 0.316 3.684 4 O -0.389 6.389 5 C -0.115 4.115 6 H 0.131 0.869 7 C -0.155 4.155 8 C -0.015 4.015 9 N -0.329 5.329 10 C -0.363 4.363 11 H 0.111 0.889 12 C -0.177 4.177 13 N -0.552 5.552 14 Si 0.711 3.289 15 H -0.212 1.212 16 H -0.231 1.231 17 H -0.202 1.202 18 C 0.062 3.938 19 H 0.083 0.917 20 C -0.214 4.214 21 H 0.116 0.884 22 H 0.079 0.921 23 H 0.080 0.920 24 H 0.097 0.903 25 H 0.092 0.908 26 H 0.083 0.917 27 H 0.047 0.953 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -10.470 -10.767 5.205 15.895 hybrid contribution 0.507 -0.803 0.251 0.982 sum -9.963 -11.570 5.456 16.214 Atomic orbital electron populations 1.23216 0.76988 1.03292 1.02453 1.86528 1.22937 1.33897 1.84392 1.23745 0.91924 0.81037 0.71730 1.90647 1.67008 1.36275 1.44932 1.22201 0.86258 1.01104 1.01892 0.86945 1.22786 0.98213 0.99437 0.95103 1.22034 0.93966 0.86284 0.99255 1.44863 1.33040 1.03372 1.51648 1.18606 0.95320 0.85083 1.37246 0.88915 1.24996 0.96814 0.96799 0.99105 1.69842 1.17237 1.33396 1.34770 0.86998 0.79309 0.83751 0.78798 1.21192 1.23062 1.20198 1.20928 0.91301 0.90312 0.91293 0.91726 1.22197 0.99731 1.02648 0.96803 0.88396 0.92097 0.91998 0.90280 0.90754 0.91699 0.95317 0.92722 0.93153 0.91764 0.94036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 101.05 1.07 1.42 16 2 O -0.36 -4.94 10.56 -39.26 -0.41 -5.36 16 3 C 0.47 7.70 7.26 36.01 0.26 7.96 16 4 O -0.50 -9.41 15.19 -18.75 -0.28 -9.69 16 5 C -0.09 -1.59 2.97 -89.94 -0.27 -1.86 16 6 H 0.11 1.66 7.85 -51.93 -0.41 1.26 16 7 C -0.12 -1.95 6.54 -24.47 -0.16 -2.11 16 8 C 0.11 2.34 4.70 -2.41 -0.01 2.33 16 9 N -0.60 -14.61 2.94 -162.44 -0.48 -15.09 16 10 C -0.24 -6.68 10.19 -15.06 -0.15 -6.84 16 11 H 0.09 2.81 8.06 -52.49 -0.42 2.39 16 12 C 0.02 0.62 5.43 -17.43 -0.09 0.52 16 13 N -0.91 -28.09 13.97 55.49 0.78 -27.32 16 14 Si 0.88 22.37 24.27 -169.99 -4.13 18.24 16 15 H -0.28 -6.91 6.49 56.52 0.37 -6.54 16 16 H -0.30 -7.82 7.11 56.52 0.40 -7.41 16 17 H -0.28 -6.86 6.66 56.52 0.38 -6.49 16 18 C 0.17 3.46 3.14 -66.95 -0.21 3.25 16 19 H 0.07 1.45 6.84 -51.93 -0.36 1.09 16 20 C -0.15 -2.93 9.13 37.16 0.34 -2.59 16 21 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 22 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 23 H 0.06 0.64 8.13 -51.93 -0.42 0.21 16 24 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 25 H 0.07 1.23 8.04 -51.93 -0.42 0.82 16 26 H 0.06 1.47 6.64 -51.93 -0.34 1.13 16 27 H 0.03 0.63 5.57 -51.93 -0.29 0.34 16 28 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 29 H 0.05 0.93 8.14 -51.92 -0.42 0.51 16 30 H 0.06 1.30 8.04 -51.93 -0.42 0.88 16 31 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 255.29 15.07 3.85 3.85 Total: -1.00 -32.10 255.29 -4.30 -36.40 By element: Atomic # 1 Polarization: 1.29 SS G_CDS: -4.39 Total: -3.10 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: 0.77 Total: 2.07 kcal Atomic # 7 Polarization: -42.71 SS G_CDS: 0.30 Total: -42.41 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: -0.70 Total: -15.05 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -4.13 Total: 18.24 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -32.10 -4.30 -36.40 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306447370.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.072 kcal (2) G-P(sol) polarization free energy of solvation -32.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds