Wall clock time and date at job start Sun Mar 29 2020 22:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46644 * 2 1 4 4 C 1.53000 * 109.49972 * 298.57385 * 3 2 1 5 5 O 1.42905 * 109.47132 * 305.54321 * 4 3 2 6 6 C 1.53040 * 109.49992 * 58.64102 * 3 2 1 7 7 C 1.53034 * 109.54184 * 181.28059 * 6 3 2 8 8 C 1.53199 * 109.33870 * 298.68667 * 7 6 3 9 9 N 1.46925 * 108.77767 * 54.61870 * 8 7 6 10 10 C 1.36931 * 120.63223 * 126.36915 * 9 8 7 11 11 H 1.07998 * 120.00510 * 331.67453 * 10 9 8 12 12 C 1.38816 * 119.99772 * 151.67587 * 10 9 8 13 13 N 1.31616 * 119.99883 * 344.26227 * 12 10 9 14 14 Si 1.86803 * 119.99770 * 164.27039 * 12 10 9 15 15 H 1.48491 * 109.47198 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47327 * 119.99719 * 14 12 10 17 17 H 1.48506 * 109.46646 * 239.99500 * 14 12 10 18 18 C 1.46932 * 118.73403 * 306.38909 * 9 8 7 19 19 H 1.08999 * 109.47034 * 56.43164 * 1 2 3 20 20 H 1.09007 * 109.46873 * 176.42908 * 1 2 3 21 21 H 1.08998 * 109.47279 * 296.42873 * 1 2 3 22 22 H 1.09000 * 109.46825 * 119.99895 * 2 1 3 23 23 H 1.09000 * 109.47292 * 240.00172 * 2 1 3 24 24 H 1.09003 * 109.46709 * 65.53926 * 4 3 2 25 25 H 1.09002 * 109.47052 * 185.54103 * 4 3 2 26 26 H 0.96695 * 113.99992 * 179.97438 * 5 4 3 27 27 H 1.08993 * 109.46304 * 301.33711 * 6 3 2 28 28 H 1.09004 * 109.45569 * 61.29142 * 6 3 2 29 29 H 1.08994 * 109.50321 * 178.71503 * 7 6 3 30 30 H 1.09004 * 109.49981 * 58.64974 * 7 6 3 31 31 H 1.09001 * 109.58585 * 294.82759 * 8 7 6 32 32 H 1.09003 * 109.70129 * 174.47193 * 8 7 6 33 33 H 0.97011 * 119.99561 * 180.02562 * 13 12 10 34 34 H 1.09000 * 109.58977 * 293.81956 * 18 9 8 35 35 H 1.09003 * 109.58516 * 173.39396 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5597 2.1540 -1.2666 5 8 1.9540 1.4002 -2.4149 6 6 1.5023 2.1744 1.2319 7 6 1.9856 3.6263 1.2162 8 6 3.5166 3.6520 1.2674 9 7 4.0404 2.8297 0.1683 10 6 4.9481 3.3457 -0.7177 11 1 4.9561 4.4051 -0.9273 12 6 5.8582 2.5069 -1.3464 13 7 6.0655 1.2936 -0.8805 14 14 6.7887 3.1005 -2.8535 15 1 6.3776 4.4911 -3.1731 16 1 8.2478 3.0657 -2.5799 17 1 6.4799 2.2161 -4.0059 18 6 3.5714 1.4434 0.0376 19 1 -0.3633 0.5682 -0.8563 20 1 -0.3633 -1.0257 -0.0640 21 1 -0.3634 0.4574 0.9202 22 1 1.8933 -0.5138 0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 0.4734 2.2411 -1.2446 25 1 2.0032 3.1485 -1.3150 26 1 1.6820 1.7929 -3.2555 27 1 0.4127 2.1538 1.2198 28 1 1.8646 1.6813 2.1340 29 1 1.5838 4.1530 2.0817 30 1 1.6441 4.1136 0.3029 31 1 3.8571 3.2476 2.2207 32 1 3.8708 4.6770 1.1578 33 1 6.7018 0.7076 -1.3197 34 1 3.9164 0.8589 0.8905 35 1 3.9597 1.0118 -0.8850 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306459224.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:14 Heat of formation + Delta-G solvation = -43.452986 kcal Electronic energy + Delta-G solvation = -15734.771351 eV Core-core repulsion = 13346.855500 eV Total energy + Delta-G solvation = -2387.915851 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.85072 -35.47740 -33.91639 -32.27990 -29.82894 -28.86149 -25.39416 -24.99765 -23.15094 -21.94614 -20.03557 -17.62961 -16.81866 -16.35124 -15.20911 -14.36649 -14.13325 -13.81336 -13.45136 -13.19209 -12.67122 -12.51309 -12.13946 -11.87106 -11.67390 -11.36743 -10.98512 -10.82808 -10.61168 -10.38528 -10.30638 -10.09851 -9.89992 -9.51929 -9.37057 -9.25597 -8.95929 -8.34626 -6.54191 -5.67948 -3.11342 3.43002 3.49840 3.51718 4.57325 4.96214 5.35790 5.46313 5.51629 5.64179 5.68732 5.70067 5.89819 5.95068 6.01476 6.14619 6.24707 6.31857 6.38306 6.51090 6.54593 6.58532 6.65309 6.83490 6.89038 6.99535 7.09772 7.11645 7.49097 7.83576 7.96410 8.35675 8.58065 9.32304 9.96471 10.53107 11.40171 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.033523 B = 0.012165 C = 0.010596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.057492 B = 2301.113155 C = 2641.875116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.106 4.106 3 C -0.081 4.081 4 C 0.099 3.901 5 O -0.562 6.562 6 C -0.100 4.100 7 C -0.138 4.138 8 C 0.143 3.857 9 N -0.591 5.591 10 C -0.251 4.251 11 H 0.062 0.938 12 C 0.007 3.993 13 N -0.900 5.900 14 Si 0.900 3.100 15 H -0.279 1.279 16 H -0.292 1.292 17 H -0.289 1.289 18 C 0.185 3.815 19 H 0.051 0.949 20 H 0.043 0.957 21 H 0.049 0.951 22 H 0.053 0.947 23 H 0.068 0.932 24 H 0.021 0.979 25 H 0.056 0.944 26 H 0.364 0.636 27 H 0.048 0.952 28 H 0.057 0.943 29 H 0.048 0.952 30 H 0.057 0.943 31 H 0.015 0.985 32 H 0.050 0.950 33 H 0.252 0.748 34 H 0.012 0.988 35 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.349 0.721 1.074 10.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.144 4.144 3 C -0.083 4.083 4 C 0.021 3.979 5 O -0.365 6.365 6 C -0.138 4.138 7 C -0.178 4.178 8 C 0.016 3.984 9 N -0.313 5.313 10 C -0.381 4.381 11 H 0.080 0.920 12 C -0.192 4.192 13 N -0.544 5.544 14 Si 0.730 3.270 15 H -0.204 1.204 16 H -0.219 1.219 17 H -0.216 1.216 18 C 0.059 3.941 19 H 0.070 0.930 20 H 0.062 0.938 21 H 0.068 0.932 22 H 0.071 0.929 23 H 0.087 0.913 24 H 0.039 0.961 25 H 0.074 0.926 26 H 0.208 0.792 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.033 0.967 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.030 0.970 35 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -9.950 0.225 1.486 10.063 hybrid contribution 0.240 0.627 -1.130 1.314 sum -9.710 0.852 0.356 9.754 Atomic orbital electron populations 1.21837 0.97188 1.00438 1.01122 1.21386 0.94420 0.96850 1.01764 1.21224 1.00956 0.93687 0.92397 1.22130 0.94909 0.95112 0.85706 1.86533 1.82208 1.52068 1.15719 1.21482 0.98573 0.96000 0.97716 1.22090 0.99304 0.96129 1.00237 1.20915 0.90798 0.95354 0.91310 1.44048 1.48186 1.10087 1.28952 1.19144 1.08662 0.93171 1.17115 0.91997 1.25007 0.97077 0.96963 1.00109 1.70020 1.36478 1.08210 1.39725 0.86270 0.79290 0.78011 0.83422 1.20440 1.21900 1.21562 1.20820 0.85973 0.85477 1.01789 0.92999 0.93773 0.93218 0.92858 0.91320 0.96090 0.92625 0.79166 0.93370 0.92426 0.93356 0.92463 0.96690 0.93110 0.93793 0.96969 0.88313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.19 37.16 0.34 -1.82 16 2 C -0.11 -1.89 4.81 -26.73 -0.13 -2.02 16 3 C -0.08 -1.59 0.38 -154.39 -0.06 -1.64 16 4 C 0.10 1.87 4.84 37.16 0.18 2.05 16 5 O -0.56 -10.91 12.21 -35.23 -0.43 -11.34 16 6 C -0.10 -1.75 4.36 -26.69 -0.12 -1.86 16 7 C -0.14 -2.46 5.74 -26.61 -0.15 -2.62 16 8 C 0.14 3.08 6.52 -3.71 -0.02 3.06 16 9 N -0.59 -15.11 2.34 -172.31 -0.40 -15.52 16 10 C -0.25 -7.03 9.59 -15.06 -0.14 -7.18 16 11 H 0.06 1.71 7.88 -52.49 -0.41 1.29 16 12 C 0.01 0.21 4.95 -17.43 -0.09 0.12 16 13 N -0.90 -26.96 11.13 55.49 0.62 -26.34 16 14 Si 0.90 22.28 29.58 -169.99 -5.03 17.25 16 15 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 16 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 17 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 18 C 0.19 4.60 3.93 -3.71 -0.01 4.58 16 19 H 0.05 0.75 6.41 -51.93 -0.33 0.42 16 20 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 21 H 0.05 0.67 6.58 -51.93 -0.34 0.33 16 22 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 23 H 0.07 1.33 7.50 -51.93 -0.39 0.94 16 24 H 0.02 0.35 6.68 -51.93 -0.35 0.00 16 25 H 0.06 1.16 6.15 -51.93 -0.32 0.84 16 26 H 0.36 5.34 9.12 45.56 0.42 5.75 16 27 H 0.05 0.74 6.41 -51.93 -0.33 0.41 16 28 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.06 1.03 6.47 -51.93 -0.34 0.69 16 31 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.05 1.07 7.93 -51.93 -0.41 0.66 16 33 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 34 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.10 2.81 5.60 -51.93 -0.29 2.52 16 LS Contribution 264.80 15.07 3.99 3.99 Total: -1.00 -30.86 264.80 -6.23 -37.09 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -4.77 Total: 2.20 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: -0.20 Total: -7.33 kcal Atomic # 7 Polarization: -42.07 SS G_CDS: 0.21 Total: -41.86 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: -0.43 Total: -11.34 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.03 Total: 17.25 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -30.86 -6.23 -37.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306459224.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.363 kcal (2) G-P(sol) polarization free energy of solvation -30.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds