Wall clock time and date at job start Sun Mar 29 2020 22:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46644 * 2 1 4 4 C 1.53000 * 109.49972 * 298.57385 * 3 2 1 5 5 O 1.42905 * 109.47132 * 305.54321 * 4 3 2 6 6 C 1.53040 * 109.49992 * 58.64102 * 3 2 1 7 7 C 1.53034 * 109.54184 * 181.28059 * 6 3 2 8 8 C 1.53199 * 109.33870 * 298.68667 * 7 6 3 9 9 N 1.46925 * 108.77767 * 54.61870 * 8 7 6 10 10 C 1.36931 * 120.63223 * 126.36915 * 9 8 7 11 11 H 1.07998 * 120.00510 * 331.67453 * 10 9 8 12 12 C 1.38816 * 119.99772 * 151.67587 * 10 9 8 13 13 N 1.31616 * 119.99883 * 344.26227 * 12 10 9 14 14 Si 1.86803 * 119.99770 * 164.27039 * 12 10 9 15 15 H 1.48491 * 109.47198 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47327 * 119.99719 * 14 12 10 17 17 H 1.48506 * 109.46646 * 239.99500 * 14 12 10 18 18 C 1.46932 * 118.73403 * 306.38909 * 9 8 7 19 19 H 1.08999 * 109.47034 * 56.43164 * 1 2 3 20 20 H 1.09007 * 109.46873 * 176.42908 * 1 2 3 21 21 H 1.08998 * 109.47279 * 296.42873 * 1 2 3 22 22 H 1.09000 * 109.46825 * 119.99895 * 2 1 3 23 23 H 1.09000 * 109.47292 * 240.00172 * 2 1 3 24 24 H 1.09003 * 109.46709 * 65.53926 * 4 3 2 25 25 H 1.09002 * 109.47052 * 185.54103 * 4 3 2 26 26 H 0.96695 * 113.99992 * 179.97438 * 5 4 3 27 27 H 1.08993 * 109.46304 * 301.33711 * 6 3 2 28 28 H 1.09004 * 109.45569 * 61.29142 * 6 3 2 29 29 H 1.08994 * 109.50321 * 178.71503 * 7 6 3 30 30 H 1.09004 * 109.49981 * 58.64974 * 7 6 3 31 31 H 1.09001 * 109.58585 * 294.82759 * 8 7 6 32 32 H 1.09003 * 109.70129 * 174.47193 * 8 7 6 33 33 H 0.97011 * 119.99561 * 180.02562 * 13 12 10 34 34 H 1.09000 * 109.58977 * 293.81956 * 18 9 8 35 35 H 1.09003 * 109.58516 * 173.39396 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5597 2.1540 -1.2666 5 8 1.9540 1.4002 -2.4149 6 6 1.5023 2.1744 1.2319 7 6 1.9856 3.6263 1.2162 8 6 3.5166 3.6520 1.2674 9 7 4.0404 2.8297 0.1683 10 6 4.9481 3.3457 -0.7177 11 1 4.9561 4.4051 -0.9273 12 6 5.8582 2.5069 -1.3464 13 7 6.0655 1.2936 -0.8805 14 14 6.7887 3.1005 -2.8535 15 1 6.3776 4.4911 -3.1731 16 1 8.2478 3.0657 -2.5799 17 1 6.4799 2.2161 -4.0059 18 6 3.5714 1.4434 0.0376 19 1 -0.3633 0.5682 -0.8563 20 1 -0.3633 -1.0257 -0.0640 21 1 -0.3634 0.4574 0.9202 22 1 1.8933 -0.5138 0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 0.4734 2.2411 -1.2446 25 1 2.0032 3.1485 -1.3150 26 1 1.6820 1.7929 -3.2555 27 1 0.4127 2.1538 1.2198 28 1 1.8646 1.6813 2.1340 29 1 1.5838 4.1530 2.0817 30 1 1.6441 4.1136 0.3029 31 1 3.8571 3.2476 2.2207 32 1 3.8708 4.6770 1.1578 33 1 6.7018 0.7076 -1.3197 34 1 3.9164 0.8589 0.8905 35 1 3.9597 1.0118 -0.8850 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306459224.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:14 Heat of formation + Delta-G solvation = -64.732068 kcal Electronic energy + Delta-G solvation = -15735.694081 eV Core-core repulsion = 13346.855500 eV Total energy + Delta-G solvation = -2388.838581 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.44923 -37.10858 -35.61862 -34.04035 -31.71723 -30.36208 -27.31647 -26.60258 -24.68374 -23.67744 -21.71248 -19.26736 -18.60417 -18.05605 -16.98938 -16.14082 -15.68265 -15.48728 -15.14444 -14.86047 -14.23517 -14.17329 -13.67989 -13.40518 -13.17996 -12.90769 -12.84349 -12.65190 -12.38793 -12.11156 -11.90342 -11.80512 -11.67587 -11.14171 -10.92894 -10.87898 -10.57890 -10.40991 -8.61493 -7.82727 -5.29376 1.44076 1.45905 1.55849 2.52142 3.31218 3.57449 3.76878 3.98371 4.10859 4.22294 4.32857 4.48958 4.56887 4.61034 4.71068 4.77019 4.88638 4.99505 5.02471 5.12811 5.21778 5.23240 5.26042 5.33399 5.44719 5.51328 5.60885 5.66665 5.70004 5.91733 6.44679 7.08836 7.19146 7.92075 8.43346 9.22873 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.033523 B = 0.012165 C = 0.010596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.057492 B = 2301.113155 C = 2641.875116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.104 4.104 3 C -0.079 4.079 4 C 0.104 3.896 5 O -0.586 6.586 6 C -0.096 4.096 7 C -0.128 4.128 8 C 0.135 3.865 9 N -0.607 5.607 10 C -0.256 4.256 11 H 0.064 0.936 12 C -0.049 4.049 13 N -0.936 5.936 14 Si 0.964 3.036 15 H -0.264 1.264 16 H -0.293 1.293 17 H -0.293 1.293 18 C 0.196 3.804 19 H 0.056 0.944 20 H 0.059 0.941 21 H 0.067 0.933 22 H 0.048 0.952 23 H 0.043 0.957 24 H 0.058 0.942 25 H 0.034 0.966 26 H 0.383 0.617 27 H 0.085 0.915 28 H 0.053 0.947 29 H 0.083 0.917 30 H 0.060 0.940 31 H 0.008 0.992 32 H 0.051 0.949 33 H 0.246 0.754 34 H -0.023 1.023 35 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.705 1.787 1.141 12.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.142 4.142 3 C -0.080 4.080 4 C 0.027 3.973 5 O -0.392 6.392 6 C -0.134 4.134 7 C -0.166 4.166 8 C 0.009 3.991 9 N -0.330 5.330 10 C -0.387 4.387 11 H 0.082 0.918 12 C -0.244 4.244 13 N -0.582 5.582 14 Si 0.793 3.207 15 H -0.189 1.189 16 H -0.221 1.221 17 H -0.220 1.220 18 C 0.071 3.929 19 H 0.075 0.925 20 H 0.078 0.922 21 H 0.086 0.914 22 H 0.067 0.933 23 H 0.062 0.938 24 H 0.076 0.924 25 H 0.052 0.948 26 H 0.230 0.770 27 H 0.103 0.897 28 H 0.072 0.928 29 H 0.102 0.898 30 H 0.078 0.922 31 H 0.026 0.974 32 H 0.070 0.930 33 H 0.056 0.944 34 H -0.005 1.005 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.336 1.322 1.557 12.504 hybrid contribution 1.002 0.304 -1.108 1.525 sum -11.333 1.626 0.449 11.458 Atomic orbital electron populations 1.21761 0.93780 1.01898 1.02171 1.21339 0.97271 0.95235 1.00380 1.21133 0.96812 0.95600 0.94474 1.22074 0.96690 0.93505 0.85034 1.86505 1.82842 1.52791 1.17063 1.21482 1.00617 0.95199 0.96068 1.21972 0.95746 0.96899 1.02009 1.21125 0.93833 0.94527 0.89575 1.44296 1.48221 1.10556 1.29933 1.19469 1.08584 0.93325 1.17287 0.91810 1.25769 0.98483 0.97209 1.02932 1.70198 1.37463 1.09471 1.41094 0.85258 0.77689 0.78031 0.79772 1.18861 1.22062 1.21954 1.20526 0.89827 0.84595 0.97998 0.92539 0.92227 0.91433 0.93309 0.93844 0.92401 0.94790 0.76965 0.89682 0.92795 0.89803 0.92164 0.97442 0.93027 0.94443 1.00503 0.92552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.53 9.19 71.98 0.66 -2.87 16 2 C -0.10 -3.60 4.81 30.60 0.15 -3.45 16 3 C -0.08 -3.00 0.38 -52.10 -0.02 -3.02 16 4 C 0.10 3.74 4.84 71.98 0.35 4.09 16 5 O -0.59 -22.37 12.21 -148.98 -1.82 -24.19 16 6 C -0.10 -3.06 4.36 30.62 0.13 -2.93 16 7 C -0.13 -4.15 5.74 30.67 0.18 -3.97 16 8 C 0.13 5.72 6.52 86.36 0.56 6.29 16 9 N -0.61 -31.54 2.34 -699.06 -1.64 -33.18 16 10 C -0.26 -14.56 9.59 84.04 0.81 -13.76 16 11 H 0.06 3.53 7.88 -2.91 -0.02 3.50 16 12 C -0.05 -2.84 4.95 84.86 0.42 -2.42 16 13 N -0.94 -58.36 11.13 21.65 0.24 -58.12 16 14 Si 0.96 46.72 29.58 68.60 2.03 48.75 16 15 H -0.26 -12.02 7.11 99.48 0.71 -11.32 16 16 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 17 H -0.29 -14.23 7.11 99.48 0.71 -13.53 16 18 C 0.20 10.05 3.93 86.36 0.34 10.39 16 19 H 0.06 1.39 6.41 -2.39 -0.02 1.38 16 20 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 21 H 0.07 1.49 6.58 -2.39 -0.02 1.48 16 22 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 23 H 0.04 1.70 7.50 -2.39 -0.02 1.68 16 24 H 0.06 1.67 6.68 -2.39 -0.02 1.65 16 25 H 0.03 1.36 6.15 -2.39 -0.01 1.35 16 26 H 0.38 10.78 9.12 -74.06 -0.68 10.11 16 27 H 0.08 2.15 6.41 -2.39 -0.02 2.14 16 28 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.06 1.96 6.47 -2.38 -0.02 1.94 16 31 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.05 2.13 7.93 -2.39 -0.02 2.12 16 33 H 0.25 14.91 8.31 -92.70 -0.77 14.14 16 34 H -0.02 -1.30 8.14 -2.39 -0.02 -1.32 16 35 H 0.06 3.36 5.60 -2.39 -0.01 3.35 16 Total: -1.00 -68.78 264.80 2.78 -66.00 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: 0.39 Total: 12.40 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: 3.58 Total: -11.66 kcal Atomic # 7 Polarization: -89.90 SS G_CDS: -1.40 Total: -91.30 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: -1.82 Total: -24.19 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.75 kcal Total: -68.78 2.78 -66.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306459224.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.265 kcal (2) G-P(sol) polarization free energy of solvation -68.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds