Wall clock time and date at job start Sun Mar 29 2020 22:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42905 * 114.00546 * 2 1 4 4 C 1.52995 * 109.51961 * 300.13021 * 3 2 1 5 5 C 1.53114 * 109.52605 * 180.02562 * 3 2 1 6 6 C 1.53037 * 109.31211 * 297.73211 * 5 3 2 7 7 N 1.46854 * 109.52285 * 300.88400 * 6 5 3 8 8 C 1.46895 * 110.99648 * 185.80147 * 7 6 5 9 9 C 1.50706 * 109.47267 * 65.74718 * 8 7 6 10 10 H 1.07994 * 119.99559 * 0.02562 * 9 8 7 11 11 C 1.37875 * 119.99934 * 179.97438 * 9 8 7 12 12 N 1.31516 * 120.00095 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 119.99991 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47194 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.47413 * 119.99904 * 13 11 9 16 16 H 1.48498 * 109.47496 * 240.00373 * 13 11 9 17 17 C 1.46840 * 111.23238 * 61.67711 * 7 6 5 18 18 C 1.53035 * 109.52994 * 298.28004 * 17 7 6 19 19 H 1.08992 * 109.46967 * 180.02562 * 1 2 3 20 20 H 1.09002 * 109.46904 * 299.99931 * 1 2 3 21 21 H 1.09001 * 109.47191 * 59.99375 * 1 2 3 22 22 H 1.08994 * 109.47421 * 299.86933 * 4 3 2 23 23 H 1.09004 * 109.47096 * 59.87154 * 4 3 2 24 24 H 1.09004 * 109.46841 * 179.86589 * 4 3 2 25 25 H 1.09002 * 109.50377 * 57.69336 * 5 3 2 26 26 H 1.09003 * 109.50316 * 177.77331 * 5 3 2 27 27 H 1.09000 * 109.46159 * 60.85546 * 6 5 3 28 28 H 1.09000 * 109.46461 * 180.82902 * 6 5 3 29 29 H 1.09006 * 109.47095 * 185.74417 * 8 7 6 30 30 H 1.08994 * 109.47117 * 305.74495 * 8 7 6 31 31 H 0.97001 * 119.99801 * 180.02562 * 12 11 9 32 32 H 1.09001 * 109.46294 * 178.26219 * 17 7 6 33 33 H 1.09005 * 109.46534 * 58.30014 * 17 7 6 34 34 H 1.09005 * 109.50290 * 299.24575 * 18 17 7 35 35 H 1.08998 * 109.54151 * 179.13613 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.5571 2.0669 -1.2472 5 6 3.5368 1.1859 -0.0006 6 6 3.9894 0.4761 1.2774 7 7 3.5400 1.2399 2.4484 8 6 4.0734 0.6629 3.6895 9 6 5.5728 0.8130 3.7095 10 1 6.0788 1.2897 2.8831 11 6 6.2984 0.3426 4.7834 12 7 5.6821 -0.2366 5.7905 13 14 8.1570 0.5280 4.8078 14 1 8.6029 1.2094 3.5660 15 1 8.5584 1.3366 5.9869 16 1 8.7874 -0.8140 4.8901 17 6 2.0750 1.3276 2.4958 18 6 1.5660 2.0633 1.2542 19 1 -0.3633 -1.0276 0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8899 22 1 1.8788 1.5285 -2.1386 23 1 0.4703 2.1516 -1.2463 24 1 1.9991 3.0633 -1.2451 25 1 3.8564 0.6101 -0.8693 26 1 3.9798 2.1810 -0.0406 27 1 3.5577 -0.5243 1.3096 28 1 5.0769 0.4027 1.2865 29 1 3.6447 1.1836 4.5459 30 1 3.8133 -0.3944 3.7398 31 1 6.1926 -0.5671 6.5461 32 1 1.7725 1.8724 3.3902 33 1 1.6516 0.3235 2.5220 34 1 1.9781 3.0723 1.2346 35 1 0.4776 2.1151 1.2816 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306501236.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:50 Heat of formation + Delta-G solvation = -50.725690 kcal Electronic energy + Delta-G solvation = -15113.385479 eV Core-core repulsion = 12725.154261 eV Total energy + Delta-G solvation = -2388.231219 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.55996 -36.33263 -33.19259 -31.99201 -30.42301 -28.52989 -26.68968 -25.78711 -22.61031 -22.36662 -20.54972 -19.12564 -16.25866 -15.94651 -15.33210 -15.14123 -14.81627 -14.14533 -13.87584 -13.45533 -13.13465 -12.49876 -12.27377 -12.13372 -11.86426 -11.82653 -11.47326 -11.11233 -10.92293 -10.74482 -10.55491 -10.43132 -10.30902 -9.80243 -9.66583 -9.19950 -9.06074 -8.38718 -7.10144 -5.97783 -3.98704 3.34115 3.41176 3.46271 3.98589 4.46882 4.92299 5.03652 5.04898 5.19761 5.37828 5.39051 5.47200 5.61188 5.67033 5.76146 5.81312 5.95292 6.01994 6.06487 6.15425 6.34305 6.34852 6.43167 6.54440 6.80015 6.87291 7.39015 7.45635 7.48051 7.87124 8.17592 8.31246 8.64369 9.09677 9.65302 11.13303 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.055072 B = 0.007370 C = 0.007000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.300342 B = 3798.455574 C = 3998.984613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.374 6.374 3 C 0.112 3.888 4 C -0.175 4.175 5 C -0.100 4.100 6 C 0.067 3.933 7 N -0.537 5.537 8 C 0.193 3.807 9 C -0.504 4.504 10 H 0.064 0.936 11 C 0.053 3.947 12 N -0.900 5.900 13 Si 0.897 3.103 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.285 1.285 17 C 0.060 3.940 18 C -0.137 4.137 19 H 0.079 0.921 20 H 0.042 0.958 21 H 0.038 0.962 22 H 0.060 0.940 23 H 0.055 0.945 24 H 0.066 0.934 25 H 0.064 0.936 26 H 0.079 0.921 27 H 0.028 0.972 28 H 0.082 0.918 29 H 0.028 0.972 30 H -0.010 1.010 31 H 0.260 0.740 32 H 0.064 0.936 33 H 0.026 0.974 34 H 0.077 0.923 35 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.069 3.098 -11.600 15.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.293 6.293 3 C 0.073 3.927 4 C -0.232 4.232 5 C -0.138 4.138 6 C -0.061 4.061 7 N -0.262 5.262 8 C 0.068 3.932 9 C -0.543 4.543 10 H 0.082 0.918 11 C -0.147 4.147 12 N -0.540 5.540 13 Si 0.725 3.275 14 H -0.197 1.197 15 H -0.211 1.211 16 H -0.211 1.211 17 C -0.069 4.069 18 C -0.175 4.175 19 H 0.097 0.903 20 H 0.061 0.939 21 H 0.057 0.943 22 H 0.079 0.921 23 H 0.074 0.926 24 H 0.085 0.915 25 H 0.082 0.918 26 H 0.098 0.902 27 H 0.046 0.954 28 H 0.100 0.900 29 H 0.046 0.954 30 H 0.008 0.992 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.044 0.956 34 H 0.095 0.905 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.734 3.323 -11.465 14.791 hybrid contribution 0.361 -0.554 0.276 0.717 sum -8.373 2.769 -11.189 14.247 Atomic orbital electron populations 1.22718 0.82465 1.02095 0.99780 1.87996 1.18718 1.27748 1.94882 1.21609 0.94718 0.82893 0.93498 1.22393 1.01266 1.01054 0.98487 1.21649 0.91453 1.01947 0.98747 1.21853 1.01020 0.94227 0.89001 1.62047 1.06231 1.53290 1.04651 1.19689 0.95284 0.92648 0.85569 1.21225 0.91430 1.37250 1.04401 0.91800 1.25000 0.98744 0.95429 0.95568 1.69978 1.35527 1.40129 1.08335 0.86452 0.85408 0.77632 0.77993 1.19660 1.21066 1.21144 1.21880 0.90495 0.98122 0.96413 1.22165 0.99600 1.00424 0.95322 0.90261 0.93922 0.94320 0.92079 0.92637 0.91488 0.91751 0.90230 0.95424 0.89998 0.95357 0.99199 0.93050 0.91726 0.95617 0.90482 0.92240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.22 101.05 1.03 1.35 16 2 O -0.37 -5.97 9.21 -35.23 -0.32 -6.29 16 3 C 0.11 1.67 0.72 -90.50 -0.06 1.61 16 4 C -0.17 -2.05 8.27 37.16 0.31 -1.74 16 5 C -0.10 -1.65 5.10 -26.65 -0.14 -1.79 16 6 C 0.07 1.40 5.16 -3.83 -0.02 1.38 16 7 N -0.54 -12.12 4.65 -236.11 -1.10 -13.22 16 8 C 0.19 5.23 4.72 -4.98 -0.02 5.21 16 9 C -0.50 -14.50 8.43 -34.44 -0.29 -14.79 16 10 H 0.06 1.81 7.12 -52.49 -0.37 1.44 16 11 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 12 N -0.90 -27.32 13.29 55.43 0.74 -26.59 16 13 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 14 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 15 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 16 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 17 C 0.06 1.15 5.33 -3.84 -0.02 1.13 16 18 C -0.14 -2.10 4.59 -26.65 -0.12 -2.23 16 19 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 20 H 0.04 0.51 6.38 -51.93 -0.33 0.17 16 21 H 0.04 0.40 6.42 -51.93 -0.33 0.07 16 22 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.05 0.58 6.54 -51.93 -0.34 0.24 16 24 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 25 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 27 H 0.03 0.61 7.76 -51.93 -0.40 0.20 16 28 H 0.08 1.81 6.70 -51.93 -0.35 1.46 16 29 H 0.03 0.81 7.99 -51.93 -0.41 0.40 16 30 H -0.01 -0.29 8.12 -51.93 -0.42 -0.71 16 31 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.06 1.23 8.02 -51.93 -0.42 0.81 16 33 H 0.03 0.52 7.76 -51.93 -0.40 0.11 16 34 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.06 0.79 6.44 -51.93 -0.33 0.45 16 LS Contribution 272.39 15.07 4.10 4.10 Total: -1.00 -30.87 272.39 -6.83 -37.70 By element: Atomic # 1 Polarization: 1.56 SS G_CDS: -5.79 Total: -4.23 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: 0.57 Total: -8.43 kcal Atomic # 7 Polarization: -39.45 SS G_CDS: -0.36 Total: -39.81 kcal Atomic # 8 Polarization: -5.97 SS G_CDS: -0.32 Total: -6.29 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -30.87 -6.83 -37.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306501236.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.026 kcal (2) G-P(sol) polarization free energy of solvation -30.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds