Wall clock time and date at job start Sun Mar 29 2020 22:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42905 * 114.00546 * 2 1 4 4 C 1.52995 * 109.51961 * 300.13021 * 3 2 1 5 5 C 1.53114 * 109.52605 * 180.02562 * 3 2 1 6 6 C 1.53037 * 109.31211 * 297.73211 * 5 3 2 7 7 N 1.46854 * 109.52285 * 300.88400 * 6 5 3 8 8 C 1.46895 * 110.99648 * 185.80147 * 7 6 5 9 9 C 1.50706 * 109.47267 * 65.74718 * 8 7 6 10 10 H 1.07994 * 119.99559 * 0.02562 * 9 8 7 11 11 C 1.37875 * 119.99934 * 179.97438 * 9 8 7 12 12 N 1.31516 * 120.00095 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 119.99991 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47194 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.47413 * 119.99904 * 13 11 9 16 16 H 1.48498 * 109.47496 * 240.00373 * 13 11 9 17 17 C 1.46840 * 111.23238 * 61.67711 * 7 6 5 18 18 C 1.53035 * 109.52994 * 298.28004 * 17 7 6 19 19 H 1.08992 * 109.46967 * 180.02562 * 1 2 3 20 20 H 1.09002 * 109.46904 * 299.99931 * 1 2 3 21 21 H 1.09001 * 109.47191 * 59.99375 * 1 2 3 22 22 H 1.08994 * 109.47421 * 299.86933 * 4 3 2 23 23 H 1.09004 * 109.47096 * 59.87154 * 4 3 2 24 24 H 1.09004 * 109.46841 * 179.86589 * 4 3 2 25 25 H 1.09002 * 109.50377 * 57.69336 * 5 3 2 26 26 H 1.09003 * 109.50316 * 177.77331 * 5 3 2 27 27 H 1.09000 * 109.46159 * 60.85546 * 6 5 3 28 28 H 1.09000 * 109.46461 * 180.82902 * 6 5 3 29 29 H 1.09006 * 109.47095 * 185.74417 * 8 7 6 30 30 H 1.08994 * 109.47117 * 305.74495 * 8 7 6 31 31 H 0.97001 * 119.99801 * 180.02562 * 12 11 9 32 32 H 1.09001 * 109.46294 * 178.26219 * 17 7 6 33 33 H 1.09005 * 109.46534 * 58.30014 * 17 7 6 34 34 H 1.09005 * 109.50290 * 299.24575 * 18 17 7 35 35 H 1.08998 * 109.54151 * 179.13613 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.5571 2.0669 -1.2472 5 6 3.5368 1.1859 -0.0006 6 6 3.9894 0.4761 1.2774 7 7 3.5400 1.2399 2.4484 8 6 4.0734 0.6629 3.6895 9 6 5.5728 0.8130 3.7095 10 1 6.0788 1.2897 2.8831 11 6 6.2984 0.3426 4.7834 12 7 5.6821 -0.2366 5.7905 13 14 8.1570 0.5280 4.8078 14 1 8.6029 1.2094 3.5660 15 1 8.5584 1.3366 5.9869 16 1 8.7874 -0.8140 4.8901 17 6 2.0750 1.3276 2.4958 18 6 1.5660 2.0633 1.2542 19 1 -0.3633 -1.0276 0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8899 22 1 1.8788 1.5285 -2.1386 23 1 0.4703 2.1516 -1.2463 24 1 1.9991 3.0633 -1.2451 25 1 3.8564 0.6101 -0.8693 26 1 3.9798 2.1810 -0.0406 27 1 3.5577 -0.5243 1.3096 28 1 5.0769 0.4027 1.2865 29 1 3.6447 1.1836 4.5459 30 1 3.8133 -0.3944 3.7398 31 1 6.1926 -0.5671 6.5461 32 1 1.7725 1.8724 3.3902 33 1 1.6516 0.3235 2.5220 34 1 1.9781 3.0723 1.2346 35 1 0.4776 2.1151 1.2816 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306501236.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:50 Heat of formation + Delta-G solvation = -72.291428 kcal Electronic energy + Delta-G solvation = -15114.320640 eV Core-core repulsion = 12725.154261 eV Total energy + Delta-G solvation = -2389.166379 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.85471 -37.89819 -35.06061 -33.64209 -31.88811 -30.10433 -27.86859 -27.44992 -24.32554 -23.98911 -22.18415 -20.44334 -18.48165 -17.32574 -16.73665 -16.38413 -16.27773 -15.86114 -15.51753 -15.11973 -14.31350 -14.05051 -13.87913 -13.61217 -13.34645 -13.04076 -12.78733 -12.76906 -12.60133 -12.37989 -12.15623 -12.08117 -11.95159 -11.48644 -11.36154 -10.86825 -10.63127 -10.34302 -9.00481 -8.21449 -6.32164 1.40687 1.41477 1.55586 2.40130 2.91157 3.10686 3.34852 3.77310 3.84910 3.99737 4.30954 4.45195 4.49844 4.52895 4.59550 4.63697 4.72583 4.77539 4.84867 4.90606 4.98328 5.06020 5.09141 5.14439 5.17274 5.31709 5.35664 5.39103 5.65235 6.04638 6.34784 6.41994 6.65619 6.84692 7.37811 8.90436 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.055072 B = 0.007370 C = 0.007000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.300342 B = 3798.455574 C = 3998.984613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.404 6.404 3 C 0.109 3.891 4 C -0.166 4.166 5 C -0.095 4.095 6 C 0.070 3.930 7 N -0.539 5.539 8 C 0.208 3.792 9 C -0.523 4.523 10 H 0.065 0.935 11 C -0.002 4.002 12 N -0.938 5.938 13 Si 0.974 3.026 14 H -0.261 1.261 15 H -0.276 1.276 16 H -0.278 1.278 17 C 0.057 3.943 18 C -0.129 4.129 19 H 0.087 0.913 20 H 0.043 0.957 21 H 0.062 0.938 22 H 0.067 0.933 23 H 0.072 0.928 24 H 0.078 0.922 25 H 0.080 0.920 26 H 0.089 0.911 27 H 0.006 0.994 28 H 0.060 0.940 29 H 0.002 0.998 30 H -0.046 1.046 31 H 0.265 0.735 32 H 0.060 0.940 33 H 0.011 0.989 34 H 0.084 0.916 35 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.117 4.312 -13.448 16.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.324 6.324 3 C 0.070 3.930 4 C -0.223 4.223 5 C -0.132 4.132 6 C -0.058 4.058 7 N -0.264 5.264 8 C 0.081 3.919 9 C -0.561 4.561 10 H 0.083 0.917 11 C -0.200 4.200 12 N -0.578 5.578 13 Si 0.798 3.202 14 H -0.185 1.185 15 H -0.202 1.202 16 H -0.204 1.204 17 C -0.071 4.071 18 C -0.166 4.166 19 H 0.105 0.895 20 H 0.061 0.939 21 H 0.081 0.919 22 H 0.086 0.914 23 H 0.091 0.909 24 H 0.097 0.903 25 H 0.098 0.902 26 H 0.108 0.892 27 H 0.024 0.976 28 H 0.079 0.921 29 H 0.021 0.979 30 H -0.029 1.029 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.029 0.971 34 H 0.103 0.897 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.804 4.548 -13.336 16.614 hybrid contribution 0.301 -0.984 0.879 1.353 sum -8.502 3.564 -12.457 15.498 Atomic orbital electron populations 1.22912 0.80595 1.03159 1.00915 1.87962 1.20868 1.28437 1.95122 1.21638 0.93396 0.83081 0.94840 1.22300 1.02447 1.01047 0.96502 1.21623 0.93289 1.01978 0.96334 1.21826 0.99643 0.93801 0.90528 1.62018 1.08461 1.52610 1.03301 1.19354 0.95131 0.90257 0.87129 1.21507 0.92265 1.37588 1.04725 0.91658 1.25990 1.04358 0.94683 0.94919 1.70111 1.37816 1.40818 1.09071 0.85268 0.78505 0.77931 0.78519 1.18490 1.20201 1.20408 1.21985 0.88286 0.98003 0.98867 1.22142 1.01184 1.00017 0.93302 0.89486 0.93855 0.91916 0.91444 0.90909 0.90261 0.90177 0.89242 0.97565 0.92103 0.97940 1.02869 0.92660 0.92172 0.97058 0.89723 0.89504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 10.22 113.37 1.16 1.60 16 2 O -0.40 -12.22 9.21 -148.98 -1.37 -13.59 16 3 C 0.11 3.00 0.72 -10.72 -0.01 3.00 16 4 C -0.17 -3.21 8.27 71.98 0.59 -2.62 16 5 C -0.09 -2.98 5.10 30.64 0.16 -2.82 16 6 C 0.07 2.98 5.16 86.32 0.45 3.42 16 7 N -0.54 -25.00 4.65 -900.93 -4.19 -29.18 16 8 C 0.21 11.83 4.72 85.56 0.40 12.24 16 9 C -0.52 -30.86 8.43 25.60 0.22 -30.65 16 10 H 0.07 3.76 7.12 -2.91 -0.02 3.74 16 11 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 12 N -0.94 -58.35 13.29 21.45 0.28 -58.07 16 13 Si 0.97 45.32 29.54 68.60 2.03 47.35 16 14 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 15 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 16 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 17 C 0.06 2.22 5.33 86.33 0.46 2.68 16 18 C -0.13 -3.68 4.59 30.65 0.14 -3.54 16 19 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 20 H 0.04 0.93 6.38 -2.39 -0.02 0.91 16 21 H 0.06 1.07 6.42 -2.39 -0.02 1.05 16 22 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 23 H 0.07 1.18 6.54 -2.39 -0.02 1.16 16 24 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 25 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 26 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 27 H 0.01 0.28 7.76 -2.39 -0.02 0.26 16 28 H 0.06 2.78 6.70 -2.39 -0.02 2.76 16 29 H 0.00 0.15 7.99 -2.38 -0.02 0.13 16 30 H -0.05 -2.91 8.12 -2.39 -0.02 -2.93 16 31 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 32 H 0.06 2.34 8.02 -2.39 -0.02 2.32 16 33 H 0.01 0.47 7.76 -2.38 -0.02 0.45 16 34 H 0.08 2.33 8.14 -2.38 -0.02 2.31 16 35 H 0.09 2.03 6.44 -2.39 -0.02 2.02 16 Total: -1.00 -68.28 272.39 1.82 -66.46 By element: Atomic # 1 Polarization: 2.35 SS G_CDS: 1.04 Total: 3.39 kcal Atomic # 6 Polarization: -20.38 SS G_CDS: 4.03 Total: -16.35 kcal Atomic # 7 Polarization: -83.35 SS G_CDS: -3.90 Total: -87.25 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: -1.37 Total: -13.59 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -68.28 1.82 -66.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306501236.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.835 kcal (2) G-P(sol) polarization free energy of solvation -68.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds