Wall clock time and date at job start Sun Mar 29 2020 22:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.47246 * 2 1 4 4 C 1.52995 * 109.47204 * 120.00451 * 2 1 3 5 5 H 1.08998 * 109.47078 * 300.00045 * 4 2 1 6 6 C 1.54813 * 109.47007 * 180.02562 * 4 2 1 7 7 N 1.45120 * 109.53732 * 172.11280 * 6 4 2 8 8 C 1.36936 * 118.75696 * 269.30001 * 7 6 4 9 9 H 1.07998 * 120.00120 * 26.10073 * 8 7 6 10 10 C 1.38815 * 120.00091 * 206.09737 * 8 7 6 11 11 N 1.31614 * 120.00041 * 15.46173 * 10 8 7 12 12 Si 1.86803 * 120.00003 * 195.46123 * 10 8 7 13 13 H 1.48501 * 109.46693 * 89.99884 * 12 10 8 14 14 H 1.48495 * 109.46939 * 210.00041 * 12 10 8 15 15 H 1.48503 * 109.46876 * 330.00410 * 12 10 8 16 16 C 1.47508 * 122.48595 * 89.28944 * 7 6 4 17 17 C 1.53743 * 111.12079 * 318.28118 * 16 7 6 18 18 C 1.51540 * 109.49045 * 320.22941 * 17 16 7 19 19 O 1.38010 * 109.47226 * 59.99739 * 4 2 1 20 20 H 1.08996 * 109.46800 * 299.99960 * 1 2 3 21 21 H 1.08997 * 109.47127 * 59.99526 * 1 2 3 22 22 H 1.08994 * 109.46823 * 179.97438 * 1 2 3 23 23 H 1.09007 * 109.46989 * 240.00494 * 2 1 3 24 24 H 1.09002 * 109.47126 * 299.99937 * 3 2 1 25 25 H 1.08998 * 109.46677 * 60.00175 * 3 2 1 26 26 H 1.08991 * 109.47150 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.45313 * 292.13451 * 6 4 2 28 28 H 1.08996 * 109.45679 * 52.10104 * 6 4 2 29 29 H 0.96998 * 120.00236 * 179.97438 * 11 10 8 30 30 H 1.08996 * 109.17100 * 78.76463 * 16 7 6 31 31 H 1.09005 * 109.16802 * 197.97116 * 16 7 6 32 32 H 1.08999 * 109.68024 * 200.11033 * 17 16 7 33 33 H 1.09001 * 109.31953 * 80.12207 * 17 16 7 34 34 H 1.09002 * 109.59328 * 331.39227 * 18 17 16 35 35 H 1.09004 * 109.58382 * 211.10506 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 1.6767 -0.2076 2.1391 6 6 3.5882 -0.7207 1.2494 7 7 4.0735 -1.2357 2.5164 8 6 4.3071 -0.3556 3.5392 9 1 3.7697 0.5804 3.5796 10 6 5.2346 -0.6664 4.5241 11 7 6.1003 -1.6384 4.3296 12 14 5.2539 0.2949 6.1257 13 1 4.3583 -0.3646 7.1096 14 1 6.6376 0.3330 6.6634 15 1 4.7811 1.6805 5.8770 16 6 4.3244 -2.6713 2.7443 17 6 3.2108 -3.5331 2.1271 18 6 1.8696 -2.8659 2.3561 19 8 1.5800 -2.0225 1.2491 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0276 -0.0005 23 1 1.8934 -0.5138 -0.8901 24 1 1.6768 1.9563 -0.8900 25 1 1.6768 1.9562 0.8900 26 1 3.1300 1.4425 -0.0005 27 1 3.9516 -1.3513 0.4379 28 1 3.9509 0.2974 1.1085 29 1 6.7487 -1.8554 5.0176 30 1 5.2791 -2.9436 2.2944 31 1 4.3681 -2.8611 3.8168 32 1 3.2098 -4.5192 2.5916 33 1 3.3866 -3.6367 1.0564 34 1 1.9083 -2.2709 3.2685 35 1 1.0942 -3.6265 2.4485 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306554522.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:14 Heat of formation + Delta-G solvation = -35.546870 kcal Electronic energy + Delta-G solvation = -15483.601243 eV Core-core repulsion = 13096.028227 eV Total energy + Delta-G solvation = -2387.573016 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.97631 -35.31048 -34.74840 -31.58117 -30.89535 -27.33009 -26.50607 -25.20950 -23.90260 -21.22877 -19.72183 -19.42853 -16.85163 -15.91553 -15.43480 -15.05091 -14.25630 -13.86302 -13.55156 -13.12542 -12.82628 -12.48376 -12.17045 -11.88716 -11.67013 -11.39789 -11.14668 -10.90390 -10.69442 -10.54922 -10.49294 -10.30655 -10.08699 -9.78701 -9.64173 -9.46234 -8.65293 -8.34781 -6.65762 -5.78275 -3.22258 3.36385 3.43466 3.44560 4.35783 4.48704 5.20187 5.33701 5.40792 5.55702 5.58281 5.83077 5.89842 5.93527 6.00923 6.07591 6.15498 6.21928 6.31604 6.38398 6.43003 6.48893 6.57248 6.65911 6.78700 6.79482 6.87145 6.99535 7.42112 7.69014 7.81666 8.42822 8.46722 9.23573 9.89448 10.36050 11.29152 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.032162 B = 0.010875 C = 0.009179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.382994 B = 2574.136789 C = 3049.556137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.085 4.085 3 C -0.145 4.145 4 C 0.084 3.916 5 H 0.042 0.958 6 C 0.122 3.878 7 N -0.595 5.595 8 C -0.260 4.260 9 H 0.065 0.935 10 C 0.004 3.996 11 N -0.904 5.904 12 Si 0.901 3.099 13 H -0.288 1.288 14 H -0.291 1.291 15 H -0.279 1.279 16 C 0.178 3.822 17 C -0.176 4.176 18 C 0.088 3.912 19 O -0.396 6.396 20 H 0.048 0.952 21 H 0.045 0.955 22 H 0.059 0.941 23 H 0.070 0.930 24 H 0.051 0.949 25 H 0.054 0.946 26 H 0.063 0.937 27 H 0.036 0.964 28 H 0.056 0.944 29 H 0.253 0.747 30 H 0.025 0.975 31 H 0.074 0.926 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.084 0.715 -5.969 10.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.104 4.104 3 C -0.202 4.202 4 C 0.022 3.978 5 H 0.060 0.940 6 C -0.006 4.006 7 N -0.316 5.316 8 C -0.389 4.389 9 H 0.083 0.917 10 C -0.194 4.194 11 N -0.549 5.549 12 Si 0.731 3.269 13 H -0.215 1.215 14 H -0.217 1.217 15 H -0.204 1.204 16 C 0.053 3.947 17 C -0.215 4.215 18 C 0.011 3.989 19 O -0.315 6.315 20 H 0.067 0.933 21 H 0.064 0.936 22 H 0.078 0.922 23 H 0.088 0.912 24 H 0.070 0.930 25 H 0.073 0.927 26 H 0.082 0.918 27 H 0.055 0.945 28 H 0.074 0.926 29 H 0.063 0.937 30 H 0.043 0.957 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.008 0.583 -6.001 10.023 hybrid contribution 0.350 0.486 1.194 1.336 sum -7.658 1.068 -4.806 9.104 Atomic orbital electron populations 1.21740 0.95529 1.01837 1.00558 1.21040 0.95639 0.95564 0.98129 1.21852 1.01795 0.95363 1.01223 1.22340 0.96864 0.82532 0.96015 0.93969 1.21651 0.92019 0.98156 0.88780 1.43853 1.76338 1.02611 1.08847 1.19232 1.16854 1.00947 1.01910 0.91700 1.25037 0.95616 0.98738 1.00058 1.70070 1.18911 1.32592 1.33282 0.86309 0.76842 0.79699 0.84054 1.21465 1.21732 1.20427 1.20989 0.92303 0.81356 1.00085 1.22801 0.97958 0.99534 1.01253 1.21965 0.95291 0.92061 0.89538 1.86023 1.77308 1.23449 1.44709 0.93270 0.93595 0.92196 0.91182 0.93015 0.92710 0.91829 0.94523 0.92623 0.93665 0.95661 0.90765 0.92222 0.92555 0.92299 0.91548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.04 37.16 0.34 -1.60 16 2 C -0.08 -1.32 2.71 -90.62 -0.25 -1.56 16 3 C -0.15 -2.05 8.87 37.16 0.33 -1.72 16 4 C 0.08 1.61 2.22 -25.78 -0.06 1.55 16 5 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 6 C 0.12 2.66 4.96 -3.83 -0.02 2.64 16 7 N -0.59 -15.08 2.23 -171.91 -0.38 -15.46 16 8 C -0.26 -7.13 9.46 -15.06 -0.14 -7.27 16 9 H 0.07 1.76 7.88 -52.49 -0.41 1.35 16 10 C 0.00 0.11 4.89 -17.43 -0.09 0.03 16 11 N -0.90 -26.30 11.00 55.49 0.61 -25.69 16 12 Si 0.90 21.78 29.58 -169.99 -5.03 16.75 16 13 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 14 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 15 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 16 C 0.18 4.35 4.70 -3.10 -0.01 4.34 16 17 C -0.18 -3.51 5.81 -27.08 -0.16 -3.67 16 18 C 0.09 1.69 6.36 36.42 0.23 1.92 16 19 O -0.40 -7.76 8.79 -26.52 -0.23 -7.99 16 20 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 21 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 22 H 0.06 0.87 7.69 -51.93 -0.40 0.47 16 23 H 0.07 1.08 8.14 -51.92 -0.42 0.66 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.06 0.94 6.26 -51.93 -0.33 0.62 16 27 H 0.04 0.80 8.12 -51.93 -0.42 0.38 16 28 H 0.06 1.20 5.92 -51.93 -0.31 0.89 16 29 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 30 H 0.03 0.67 8.04 -51.93 -0.42 0.25 16 31 H 0.07 1.99 6.37 -51.93 -0.33 1.66 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.06 1.12 8.02 -51.93 -0.42 0.70 16 34 H 0.06 1.26 7.40 -51.93 -0.38 0.88 16 35 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 271.08 15.07 4.09 4.09 Total: -1.00 -29.05 271.08 -6.71 -35.75 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: -5.93 Total: -2.10 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: 0.18 Total: -5.35 kcal Atomic # 7 Polarization: -41.38 SS G_CDS: 0.23 Total: -41.16 kcal Atomic # 8 Polarization: -7.76 SS G_CDS: -0.23 Total: -7.99 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.03 Total: 16.75 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -29.05 -6.71 -35.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306554522.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.207 kcal (2) G-P(sol) polarization free energy of solvation -29.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds