Wall clock time and date at job start Sun Mar 29 2020 22:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.47246 * 2 1 4 4 C 1.52995 * 109.47204 * 120.00451 * 2 1 3 5 5 H 1.08998 * 109.47078 * 300.00045 * 4 2 1 6 6 C 1.54813 * 109.47007 * 180.02562 * 4 2 1 7 7 N 1.45120 * 109.53732 * 172.11280 * 6 4 2 8 8 C 1.36936 * 118.75696 * 269.30001 * 7 6 4 9 9 H 1.07998 * 120.00120 * 26.10073 * 8 7 6 10 10 C 1.38815 * 120.00091 * 206.09737 * 8 7 6 11 11 N 1.31614 * 120.00041 * 15.46173 * 10 8 7 12 12 Si 1.86803 * 120.00003 * 195.46123 * 10 8 7 13 13 H 1.48501 * 109.46693 * 89.99884 * 12 10 8 14 14 H 1.48495 * 109.46939 * 210.00041 * 12 10 8 15 15 H 1.48503 * 109.46876 * 330.00410 * 12 10 8 16 16 C 1.47508 * 122.48595 * 89.28944 * 7 6 4 17 17 C 1.53743 * 111.12079 * 318.28118 * 16 7 6 18 18 C 1.51540 * 109.49045 * 320.22941 * 17 16 7 19 19 O 1.38010 * 109.47226 * 59.99739 * 4 2 1 20 20 H 1.08996 * 109.46800 * 299.99960 * 1 2 3 21 21 H 1.08997 * 109.47127 * 59.99526 * 1 2 3 22 22 H 1.08994 * 109.46823 * 179.97438 * 1 2 3 23 23 H 1.09007 * 109.46989 * 240.00494 * 2 1 3 24 24 H 1.09002 * 109.47126 * 299.99937 * 3 2 1 25 25 H 1.08998 * 109.46677 * 60.00175 * 3 2 1 26 26 H 1.08991 * 109.47150 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.45313 * 292.13451 * 6 4 2 28 28 H 1.08996 * 109.45679 * 52.10104 * 6 4 2 29 29 H 0.96998 * 120.00236 * 179.97438 * 11 10 8 30 30 H 1.08996 * 109.17100 * 78.76463 * 16 7 6 31 31 H 1.09005 * 109.16802 * 197.97116 * 16 7 6 32 32 H 1.08999 * 109.68024 * 200.11033 * 17 16 7 33 33 H 1.09001 * 109.31953 * 80.12207 * 17 16 7 34 34 H 1.09002 * 109.59328 * 331.39227 * 18 17 16 35 35 H 1.09004 * 109.58382 * 211.10506 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 1.6767 -0.2076 2.1391 6 6 3.5882 -0.7207 1.2494 7 7 4.0735 -1.2357 2.5164 8 6 4.3071 -0.3556 3.5392 9 1 3.7697 0.5804 3.5796 10 6 5.2346 -0.6664 4.5241 11 7 6.1003 -1.6384 4.3296 12 14 5.2539 0.2949 6.1257 13 1 4.3583 -0.3646 7.1096 14 1 6.6376 0.3330 6.6634 15 1 4.7811 1.6805 5.8770 16 6 4.3244 -2.6713 2.7443 17 6 3.2108 -3.5331 2.1271 18 6 1.8696 -2.8659 2.3561 19 8 1.5800 -2.0225 1.2491 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0276 -0.0005 23 1 1.8934 -0.5138 -0.8901 24 1 1.6768 1.9563 -0.8900 25 1 1.6768 1.9562 0.8900 26 1 3.1300 1.4425 -0.0005 27 1 3.9516 -1.3513 0.4379 28 1 3.9509 0.2974 1.1085 29 1 6.7487 -1.8554 5.0176 30 1 5.2791 -2.9436 2.2944 31 1 4.3681 -2.8611 3.8168 32 1 3.2098 -4.5192 2.5916 33 1 3.3866 -3.6367 1.0564 34 1 1.9083 -2.2709 3.2685 35 1 1.0942 -3.6265 2.4485 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306554522.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:14 Heat of formation + Delta-G solvation = -52.282287 kcal Electronic energy + Delta-G solvation = -15484.326945 eV Core-core repulsion = 13096.028227 eV Total energy + Delta-G solvation = -2388.298718 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.58731 -37.05175 -36.26127 -33.52842 -32.62578 -28.90960 -27.96458 -26.88436 -25.76030 -22.86086 -21.35661 -21.01627 -18.82596 -17.49009 -17.12745 -16.80864 -16.05772 -15.65065 -15.00015 -14.71999 -14.47819 -14.07922 -13.63192 -13.23856 -13.12875 -13.03099 -12.93433 -12.79599 -12.36995 -12.18355 -11.92269 -11.84071 -11.73622 -11.61892 -11.39893 -11.09678 -10.52979 -10.20744 -8.69425 -7.89736 -5.37036 1.43540 1.44706 1.53689 2.47742 2.87359 3.23780 3.58258 4.01420 4.12253 4.19545 4.31827 4.39983 4.46211 4.58954 4.64413 4.76757 4.86137 4.89256 4.93688 5.06248 5.07713 5.12990 5.17319 5.27551 5.31189 5.44352 5.52456 5.56285 5.59138 5.72412 6.35192 6.85169 7.13763 7.87169 8.28612 9.15703 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.032162 B = 0.010875 C = 0.009179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.382994 B = 2574.136789 C = 3049.556137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.082 4.082 3 C -0.142 4.142 4 C 0.094 3.906 5 H 0.022 0.978 6 C 0.119 3.881 7 N -0.610 5.610 8 C -0.267 4.267 9 H 0.064 0.936 10 C -0.048 4.048 11 N -0.935 5.935 12 Si 0.965 3.035 13 H -0.285 1.285 14 H -0.294 1.294 15 H -0.269 1.269 16 C 0.185 3.815 17 C -0.163 4.163 18 C 0.089 3.911 19 O -0.394 6.394 20 H 0.046 0.954 21 H 0.071 0.929 22 H 0.053 0.947 23 H 0.075 0.925 24 H 0.080 0.920 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.034 0.966 28 H 0.053 0.947 29 H 0.250 0.750 30 H -0.007 1.007 31 H 0.045 0.955 32 H 0.085 0.915 33 H 0.060 0.940 34 H 0.033 0.967 35 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.778 1.144 -6.675 11.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.101 4.101 3 C -0.199 4.199 4 C 0.033 3.967 5 H 0.040 0.960 6 C -0.008 4.008 7 N -0.333 5.333 8 C -0.398 4.398 9 H 0.082 0.918 10 C -0.243 4.243 11 N -0.581 5.581 12 Si 0.793 3.207 13 H -0.211 1.211 14 H -0.220 1.220 15 H -0.193 1.193 16 C 0.060 3.940 17 C -0.202 4.202 18 C 0.013 3.987 19 O -0.313 6.313 20 H 0.065 0.935 21 H 0.090 0.910 22 H 0.072 0.928 23 H 0.093 0.907 24 H 0.099 0.901 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.053 0.947 28 H 0.072 0.928 29 H 0.059 0.941 30 H 0.011 0.989 31 H 0.063 0.937 32 H 0.104 0.896 33 H 0.079 0.921 34 H 0.051 0.949 35 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -9.729 1.022 -6.732 11.875 hybrid contribution 0.895 0.351 1.363 1.668 sum -8.834 1.373 -5.369 10.429 Atomic orbital electron populations 1.21688 0.93757 1.01842 1.01790 1.21069 0.97085 0.95837 0.96075 1.21836 1.00982 0.94648 1.02462 1.22232 0.94492 0.82693 0.97249 0.95980 1.21815 0.93993 0.97747 0.87197 1.44091 1.76665 1.02795 1.09737 1.19492 1.16405 1.01207 1.02662 0.91825 1.25786 0.95487 1.00010 1.03046 1.70229 1.19658 1.34231 1.34009 0.85298 0.76457 0.78829 0.80085 1.21131 1.22034 1.19338 1.20777 0.92854 0.82000 0.98322 1.22651 0.96588 0.99787 1.01190 1.22036 0.95946 0.92396 0.88329 1.86054 1.77045 1.23503 1.44725 0.93453 0.90968 0.92811 0.90683 0.90124 0.93123 0.93086 0.94722 0.92829 0.94104 0.98857 0.93692 0.89602 0.92119 0.94884 0.87764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.30 9.04 71.98 0.65 -2.65 16 2 C -0.08 -2.36 2.71 -10.79 -0.03 -2.39 16 3 C -0.14 -3.71 8.87 71.98 0.64 -3.07 16 4 C 0.09 3.54 2.22 31.21 0.07 3.61 16 5 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 6 C 0.12 5.20 4.96 87.26 0.43 5.64 16 7 N -0.61 -31.51 2.23 -697.81 -1.55 -33.06 16 8 C -0.27 -14.92 9.46 84.03 0.80 -14.13 16 9 H 0.06 3.49 7.88 -2.91 -0.02 3.47 16 10 C -0.05 -2.71 4.89 84.86 0.41 -2.29 16 11 N -0.94 -55.91 11.00 21.65 0.24 -55.67 16 12 Si 0.97 45.30 29.58 68.60 2.03 47.33 16 13 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 14 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 15 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 16 C 0.19 9.30 4.70 86.44 0.41 9.71 16 17 C -0.16 -6.34 5.81 30.37 0.18 -6.16 16 18 C 0.09 3.28 6.36 71.50 0.45 3.74 16 19 O -0.39 -14.76 8.79 -117.80 -1.04 -15.80 16 20 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 21 H 0.07 1.42 8.14 -2.39 -0.02 1.41 16 22 H 0.05 1.40 7.69 -2.39 -0.02 1.38 16 23 H 0.07 2.12 8.14 -2.38 -0.02 2.11 16 24 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.05 1.45 6.26 -2.39 -0.01 1.43 16 27 H 0.03 1.51 8.12 -2.39 -0.02 1.49 16 28 H 0.05 2.33 5.92 -2.39 -0.01 2.32 16 29 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 30 H -0.01 -0.37 8.04 -2.39 -0.02 -0.39 16 31 H 0.04 2.49 6.37 -2.38 -0.02 2.47 16 32 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 33 H 0.06 2.31 8.02 -2.39 -0.02 2.30 16 34 H 0.03 1.39 7.40 -2.39 -0.02 1.38 16 35 H 0.10 3.10 8.14 -2.38 -0.02 3.08 16 Total: -1.00 -62.82 271.08 4.72 -58.10 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: 1.03 Total: 7.12 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: 4.01 Total: -8.01 kcal Atomic # 7 Polarization: -87.42 SS G_CDS: -1.32 Total: -88.74 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: -1.04 Total: -15.80 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -62.82 4.72 -58.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306554522.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.813 kcal (2) G-P(sol) polarization free energy of solvation -62.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds