Wall clock time and date at job start Sun Mar 29 2020 21:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08995 * 109.50066 * 2 1 4 4 C 1.53194 * 109.50001 * 120.06679 * 2 1 3 5 5 N 1.46928 * 108.77573 * 65.31388 * 4 2 1 6 6 C 1.36936 * 120.63077 * 233.58987 * 5 4 2 7 7 H 1.08001 * 119.99919 * 151.84397 * 6 5 4 8 8 C 1.38814 * 119.99720 * 332.11204 * 6 5 4 9 9 N 1.31611 * 120.00165 * 342.68846 * 8 6 5 10 10 Si 1.86800 * 119.99650 * 162.69095 * 8 6 5 11 11 H 1.48497 * 109.47312 * 59.99666 * 10 8 6 12 12 H 1.48498 * 109.47157 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.46925 * 299.99671 * 10 8 6 14 14 C 1.46928 * 118.73811 * 53.86100 * 5 4 2 15 15 C 1.53620 * 108.54332 * 306.09854 * 14 5 4 16 16 C 1.53039 * 109.24416 * 54.85309 * 15 14 5 17 17 H 1.08993 * 109.44902 * 58.52579 * 16 15 14 18 18 C 1.50702 * 109.45777 * 178.49247 * 16 15 14 19 19 O 1.20825 * 119.99942 * 120.06704 * 18 16 15 20 20 O 1.34228 * 120.00264 * 300.06552 * 18 16 15 21 21 H 1.09005 * 109.46949 * 299.93234 * 1 2 3 22 22 H 1.08996 * 109.47278 * 59.93559 * 1 2 3 23 23 H 1.09000 * 109.47158 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.58381 * 305.53153 * 4 2 1 25 25 H 1.08994 * 109.70476 * 185.17279 * 4 2 1 26 26 H 0.97000 * 119.99989 * 179.97438 * 9 8 6 27 27 H 1.09005 * 109.58261 * 65.92327 * 14 5 4 28 28 H 1.08997 * 109.58669 * 186.35219 * 14 5 4 29 29 H 1.09003 * 109.62842 * 294.86097 * 15 14 5 30 30 H 1.08998 * 109.45973 * 174.74243 * 15 14 5 31 31 H 0.96699 * 117.00366 * 180.02562 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0413 -0.7235 1.2498 5 7 1.6515 -2.1379 1.1701 6 6 0.9639 -2.7308 2.1952 7 1 0.3020 -3.5600 1.9929 8 6 1.1133 -2.2626 3.4934 9 7 2.1401 -1.5002 3.8039 10 14 -0.1431 -2.7148 4.7997 11 1 -0.1878 -4.1911 4.9536 12 1 0.2412 -2.0932 6.0924 13 1 -1.4820 -2.2190 4.3913 14 6 2.0188 -2.9056 -0.0276 15 6 1.5030 -2.1561 -1.2654 16 6 2.0408 -0.7234 -1.2481 17 1 3.1304 -0.7450 -1.2350 18 6 1.5678 0.0052 -2.4796 19 8 0.8918 1.0006 -2.3703 20 8 1.8976 -0.4516 -3.6979 21 1 -0.3633 0.5128 0.8906 22 1 -0.3633 0.5148 -0.8894 23 1 -0.3633 -1.0277 -0.0005 24 1 1.6007 -0.2726 2.1389 25 1 3.1273 -0.6461 1.3007 26 1 2.2443 -1.1727 4.7110 27 1 3.1032 -3.0022 -0.0812 28 1 1.5634 -3.8948 0.0185 29 1 0.4132 -2.1358 -1.2534 30 1 1.8475 -2.6632 -2.1667 31 1 1.5713 0.0495 -4.4578 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306638793.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:22 Heat of formation + Delta-G solvation = -78.954746 kcal Electronic energy + Delta-G solvation = -15079.564148 eV Core-core repulsion = 12554.275731 eV Total energy + Delta-G solvation = -2525.288417 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.31534 -37.65111 -35.87224 -33.37557 -31.28287 -30.18705 -26.58191 -25.73945 -22.97316 -21.89559 -20.88951 -18.19249 -17.75712 -16.84946 -16.08427 -15.35430 -14.81383 -14.18535 -13.53065 -13.37578 -13.11293 -12.92869 -12.47380 -11.99414 -11.50138 -11.21640 -11.06406 -10.86658 -10.75124 -10.59970 -10.27495 -10.13174 -10.00351 -9.79822 -9.56098 -9.37819 -8.45550 -6.67480 -5.78907 -3.21158 2.49763 3.34821 3.39833 3.45322 3.46772 4.50233 5.17372 5.27368 5.39647 5.52984 5.55034 5.81181 6.00846 6.14632 6.29985 6.33497 6.44205 6.47583 6.64763 6.68610 6.85132 6.88511 7.01368 7.17605 7.32596 7.63954 7.79860 8.17222 8.45170 9.20930 9.84305 10.40730 11.29746 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.054434 B = 0.009068 C = 0.008666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.259125 B = 3087.083380 C = 3230.426401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.098 4.098 3 H 0.062 0.938 4 C 0.176 3.824 5 N -0.589 5.589 6 C -0.252 4.252 7 H 0.065 0.935 8 C 0.004 3.996 9 N -0.903 5.903 10 Si 0.901 3.099 11 H -0.283 1.283 12 H -0.291 1.291 13 H -0.284 1.284 14 C 0.146 3.854 15 C -0.127 4.127 16 C -0.066 4.066 17 H 0.099 0.901 18 C 0.479 3.521 19 O -0.515 6.515 20 O -0.521 6.521 21 H 0.047 0.953 22 H 0.053 0.947 23 H 0.061 0.939 24 H 0.093 0.907 25 H 0.020 0.980 26 H 0.254 0.746 27 H 0.021 0.979 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.199 1.286 -10.693 10.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.119 4.119 3 H 0.080 0.920 4 C 0.050 3.950 5 N -0.312 5.312 6 C -0.382 4.382 7 H 0.083 0.917 8 C -0.195 4.195 9 N -0.547 5.547 10 Si 0.731 3.269 11 H -0.209 1.209 12 H -0.217 1.217 13 H -0.210 1.210 14 C 0.020 3.980 15 C -0.166 4.166 16 C -0.085 4.085 17 H 0.117 0.883 18 C 0.322 3.678 19 O -0.403 6.403 20 O -0.332 6.332 21 H 0.066 0.934 22 H 0.072 0.928 23 H 0.080 0.920 24 H 0.111 0.889 25 H 0.038 0.962 26 H 0.064 0.936 27 H 0.039 0.961 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -0.196 1.387 -10.123 10.219 hybrid contribution -0.766 0.240 0.166 0.819 sum -0.962 1.627 -9.957 10.135 Atomic orbital electron populations 1.21873 0.94988 1.02140 1.00884 1.21727 0.97189 0.98277 0.94675 0.91952 1.20871 0.96309 0.83774 0.94060 1.44044 1.65090 1.05657 1.16373 1.19112 1.17837 1.15489 0.85730 0.91732 1.25023 0.96978 1.00474 0.97005 1.70005 1.27307 1.38449 1.18921 0.86393 0.81481 0.78056 0.80984 1.20909 1.21657 1.21020 1.20987 0.96565 0.94297 0.86171 1.22186 1.01437 0.92773 1.00227 1.21128 1.01924 0.96701 0.88762 0.88279 1.24193 0.76329 0.82675 0.84576 1.90631 1.36404 1.26223 1.87041 1.84608 1.73194 1.58377 1.17032 0.93423 0.92817 0.91962 0.88855 0.96229 0.93551 0.96066 0.92258 0.91397 0.91985 0.74285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 8.40 37.15 0.31 -2.52 16 2 C -0.10 -1.94 2.36 -90.50 -0.21 -2.15 16 3 H 0.06 1.20 8.07 -51.93 -0.42 0.78 16 4 C 0.18 4.12 4.70 -3.71 -0.02 4.10 16 5 N -0.59 -14.30 2.43 -172.05 -0.42 -14.72 16 6 C -0.25 -6.76 9.58 -15.06 -0.14 -6.91 16 7 H 0.06 1.70 7.89 -52.49 -0.41 1.29 16 8 C 0.00 0.11 4.91 -17.43 -0.09 0.02 16 9 N -0.90 -25.86 11.20 55.49 0.62 -25.24 16 10 Si 0.90 21.57 29.59 -169.99 -5.03 16.54 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 12 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 13 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 14 C 0.15 2.94 6.54 -3.49 -0.02 2.92 16 15 C -0.13 -2.16 4.97 -26.39 -0.13 -2.29 16 16 C -0.07 -1.13 2.37 -91.73 -0.22 -1.34 16 17 H 0.10 1.61 8.14 -51.93 -0.42 1.18 16 18 C 0.48 7.62 7.34 36.01 0.26 7.89 16 19 O -0.52 -9.40 14.51 -18.75 -0.27 -9.67 16 20 O -0.52 -6.50 13.30 -39.25 -0.52 -7.02 16 21 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 22 H 0.05 1.04 5.65 -51.93 -0.29 0.74 16 23 H 0.06 1.30 5.97 -51.93 -0.31 0.99 16 24 H 0.09 2.47 6.05 -51.93 -0.31 2.16 16 25 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 29 H 0.07 1.21 6.33 -51.93 -0.33 0.88 16 30 H 0.06 0.91 8.08 -51.93 -0.42 0.49 16 31 H 0.40 3.13 9.10 45.56 0.41 3.55 16 LS Contribution 249.46 15.07 3.76 3.76 Total: -1.00 -30.29 249.46 -5.44 -35.73 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -3.32 Total: 0.89 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: -0.26 Total: -0.28 kcal Atomic # 7 Polarization: -40.16 SS G_CDS: 0.20 Total: -39.96 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: -0.79 Total: -16.70 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.54 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -30.29 -5.44 -35.73 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306638793.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.223 kcal (2) G-P(sol) polarization free energy of solvation -30.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds