Wall clock time and date at job start Sun Mar 29 2020 21:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.50075 * 2 1 4 4 C 1.53197 * 109.49516 * 239.93773 * 2 1 3 5 5 N 1.46923 * 108.77553 * 294.68456 * 4 2 1 6 6 C 1.36937 * 120.63232 * 126.40998 * 5 4 2 7 7 H 1.07998 * 120.00455 * 207.66646 * 6 5 4 8 8 C 1.38818 * 119.99966 * 27.66631 * 6 5 4 9 9 N 1.31620 * 119.99342 * 17.36588 * 8 6 5 10 10 Si 1.86795 * 120.00018 * 197.36444 * 8 6 5 11 11 H 1.48501 * 109.47045 * 90.00300 * 10 8 6 12 12 H 1.48505 * 109.46933 * 210.00082 * 10 8 6 13 13 H 1.48491 * 109.47501 * 330.00079 * 10 8 6 14 14 C 1.46928 * 118.74015 * 306.39363 * 5 4 2 15 15 C 1.53186 * 108.77583 * 53.60710 * 14 5 4 16 16 C 1.53044 * 109.33864 * 305.34837 * 15 14 5 17 17 H 1.08996 * 109.46315 * 301.36226 * 16 15 14 18 18 C 1.50705 * 109.45837 * 181.40060 * 16 15 14 19 19 O 1.20817 * 120.00182 * 240.00027 * 18 16 15 20 20 O 1.34235 * 119.99952 * 60.00682 * 18 16 15 21 21 H 1.08991 * 109.47269 * 180.02562 * 1 2 3 22 22 H 1.09007 * 109.46711 * 300.06342 * 1 2 3 23 23 H 1.09001 * 109.47221 * 60.05601 * 1 2 3 24 24 H 1.08994 * 109.58777 * 174.90071 * 4 2 1 25 25 H 1.09001 * 109.58510 * 54.46711 * 4 2 1 26 26 H 0.97004 * 119.99493 * 180.02562 * 9 8 6 27 27 H 1.09002 * 109.58355 * 293.81966 * 14 5 4 28 28 H 1.09006 * 109.58781 * 173.39494 * 14 5 4 29 29 H 1.08994 * 109.50203 * 65.32239 * 15 14 5 30 30 H 1.09008 * 109.49672 * 185.38357 * 15 14 5 31 31 H 0.96698 * 116.99996 * 179.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0413 -0.7234 -1.2499 5 7 1.6514 -2.1378 -1.1703 6 6 0.9637 -2.7307 -2.1953 7 1 0.3079 -3.5649 -1.9943 8 6 1.1094 -2.2595 -3.4929 9 7 2.1342 -1.4943 -3.8039 10 14 -0.1488 -2.7114 -4.7975 11 1 -1.2310 -1.6947 -4.8147 12 1 0.5108 -2.7548 -6.1274 13 1 -0.7263 -4.0439 -4.4878 14 6 2.0139 -2.9041 0.0298 15 6 1.5029 -2.1562 1.2652 16 6 2.0408 -0.7235 1.2489 17 1 3.1305 -0.7449 1.2358 18 6 1.5679 0.0044 2.4808 19 8 0.8910 0.9992 2.3722 20 8 1.8989 -0.4525 3.6988 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5149 0.8895 23 1 -0.3634 0.5130 -0.8905 24 1 3.1274 -0.6460 -1.2983 25 1 1.6006 -0.2725 -2.1390 26 1 2.2359 -1.1647 -4.7105 27 1 3.0978 -3.0044 0.0857 28 1 1.5552 -3.8919 -0.0151 29 1 0.4132 -2.1359 1.2534 30 1 1.8476 -2.6640 2.1662 31 1 1.5726 0.0481 4.4591 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306638794.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:25 Heat of formation + Delta-G solvation = -79.018015 kcal Electronic energy + Delta-G solvation = -15080.300196 eV Core-core repulsion = 12555.009036 eV Total energy + Delta-G solvation = -2525.291160 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.31793 -37.66288 -35.87532 -33.37724 -31.30174 -30.19055 -26.59475 -25.74413 -22.97568 -21.89148 -20.89317 -18.19219 -17.75920 -16.85381 -16.08594 -15.35739 -14.82181 -14.18384 -13.53809 -13.37767 -13.11308 -12.93255 -12.48191 -12.00424 -11.50277 -11.22197 -11.06093 -10.87852 -10.75989 -10.61131 -10.24601 -10.12421 -10.00214 -9.79835 -9.56319 -9.37877 -8.46174 -6.68449 -5.79040 -3.20922 2.49598 3.34515 3.39607 3.46164 3.46664 4.50033 5.17063 5.26932 5.39248 5.52637 5.54810 5.80846 6.00647 6.14560 6.30607 6.33201 6.43857 6.47262 6.64556 6.68265 6.84960 6.88210 7.01215 7.17263 7.32588 7.63858 7.80061 8.17038 8.44683 9.20786 9.84143 10.40245 11.29670 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.054429 B = 0.009070 C = 0.008668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.309491 B = 3086.375825 C = 3229.645978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.099 4.099 3 H 0.062 0.938 4 C 0.176 3.824 5 N -0.589 5.589 6 C -0.251 4.251 7 H 0.066 0.934 8 C 0.003 3.997 9 N -0.902 5.902 10 Si 0.901 3.099 11 H -0.287 1.287 12 H -0.292 1.292 13 H -0.279 1.279 14 C 0.146 3.854 15 C -0.127 4.127 16 C -0.066 4.066 17 H 0.099 0.901 18 C 0.479 3.521 19 O -0.515 6.515 20 O -0.521 6.521 21 H 0.061 0.939 22 H 0.053 0.947 23 H 0.047 0.953 24 H 0.019 0.981 25 H 0.094 0.906 26 H 0.254 0.746 27 H 0.021 0.979 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.205 1.255 10.738 10.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.119 4.119 3 H 0.081 0.919 4 C 0.050 3.950 5 N -0.312 5.312 6 C -0.380 4.380 7 H 0.084 0.916 8 C -0.196 4.196 9 N -0.547 5.547 10 Si 0.731 3.269 11 H -0.214 1.214 12 H -0.218 1.218 13 H -0.205 1.205 14 C 0.020 3.980 15 C -0.166 4.166 16 C -0.085 4.085 17 H 0.117 0.883 18 C 0.322 3.678 19 O -0.403 6.403 20 O -0.332 6.332 21 H 0.080 0.920 22 H 0.072 0.928 23 H 0.066 0.934 24 H 0.038 0.962 25 H 0.112 0.888 26 H 0.064 0.936 27 H 0.039 0.961 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -0.203 1.345 10.172 10.263 hybrid contribution -0.767 0.255 -0.162 0.824 sum -0.970 1.600 10.011 10.184 Atomic orbital electron populations 1.21875 0.94995 1.02131 1.00894 1.21747 0.97187 0.98291 0.94671 0.91949 1.20882 0.96296 0.83756 0.94080 1.44045 1.65215 1.05748 1.16177 1.19174 1.17997 1.15098 0.85775 0.91630 1.25021 0.97018 1.00539 0.96986 1.70025 1.27365 1.38427 1.18871 0.86306 0.81174 0.78225 0.81165 1.21446 1.21804 1.20461 1.20899 0.96633 0.94320 0.86165 1.22113 1.01463 0.92799 1.00238 1.21140 1.01925 0.96698 0.88769 0.88276 1.24186 0.76338 0.82655 0.84582 1.90629 1.36372 1.26242 1.87046 1.84610 1.73159 1.58413 1.17032 0.91968 0.92813 0.93417 0.96244 0.88783 0.93616 0.96099 0.92268 0.91408 0.91953 0.74283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 8.40 37.16 0.31 -2.51 16 2 C -0.10 -1.94 2.36 -90.46 -0.21 -2.15 16 3 H 0.06 1.20 8.07 -51.93 -0.42 0.78 16 4 C 0.18 4.12 4.70 -3.71 -0.02 4.10 16 5 N -0.59 -14.29 2.43 -172.32 -0.42 -14.71 16 6 C -0.25 -6.73 9.59 -15.06 -0.14 -6.87 16 7 H 0.07 1.73 7.89 -52.49 -0.41 1.32 16 8 C 0.00 0.08 4.91 -17.43 -0.09 -0.01 16 9 N -0.90 -25.86 11.19 55.49 0.62 -25.24 16 10 Si 0.90 21.59 29.59 -169.99 -5.03 16.56 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 13 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 14 C 0.15 2.94 6.52 -3.71 -0.02 2.91 16 15 C -0.13 -2.15 4.95 -26.61 -0.13 -2.28 16 16 C -0.07 -1.13 2.37 -91.69 -0.22 -1.35 16 17 H 0.10 1.61 8.14 -51.93 -0.42 1.18 16 18 C 0.48 7.62 7.34 36.01 0.26 7.88 16 19 O -0.51 -9.39 14.51 -18.74 -0.27 -9.67 16 20 O -0.52 -6.49 13.30 -39.27 -0.52 -7.02 16 21 H 0.06 1.30 5.97 -51.93 -0.31 0.99 16 22 H 0.05 1.04 5.65 -51.93 -0.29 0.74 16 23 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 24 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.09 2.49 6.04 -51.93 -0.31 2.18 16 26 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 27 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 29 H 0.07 1.20 6.33 -51.93 -0.33 0.87 16 30 H 0.06 0.91 8.08 -51.92 -0.42 0.49 16 31 H 0.40 3.13 9.10 45.56 0.41 3.54 16 LS Contribution 249.43 15.07 3.76 3.76 Total: -1.00 -30.31 249.43 -5.44 -35.75 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -3.32 Total: 0.84 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: -0.26 Total: -0.28 kcal Atomic # 7 Polarization: -40.15 SS G_CDS: 0.20 Total: -39.95 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: -0.79 Total: -16.68 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -30.31 -5.44 -35.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306638794.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.268 kcal (2) G-P(sol) polarization free energy of solvation -30.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds