Wall clock time and date at job start Sun Mar 29 2020 21:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.50075 * 2 1 4 4 C 1.53197 * 109.49516 * 239.93773 * 2 1 3 5 5 N 1.46923 * 108.77553 * 294.68456 * 4 2 1 6 6 C 1.36937 * 120.63232 * 126.40998 * 5 4 2 7 7 H 1.07998 * 120.00455 * 207.66646 * 6 5 4 8 8 C 1.38818 * 119.99966 * 27.66631 * 6 5 4 9 9 N 1.31620 * 119.99342 * 17.36588 * 8 6 5 10 10 Si 1.86795 * 120.00018 * 197.36444 * 8 6 5 11 11 H 1.48501 * 109.47045 * 90.00300 * 10 8 6 12 12 H 1.48505 * 109.46933 * 210.00082 * 10 8 6 13 13 H 1.48491 * 109.47501 * 330.00079 * 10 8 6 14 14 C 1.46928 * 118.74015 * 306.39363 * 5 4 2 15 15 C 1.53186 * 108.77583 * 53.60710 * 14 5 4 16 16 C 1.53044 * 109.33864 * 305.34837 * 15 14 5 17 17 H 1.08996 * 109.46315 * 301.36226 * 16 15 14 18 18 C 1.50705 * 109.45837 * 181.40060 * 16 15 14 19 19 O 1.20817 * 120.00182 * 240.00027 * 18 16 15 20 20 O 1.34235 * 119.99952 * 60.00682 * 18 16 15 21 21 H 1.08991 * 109.47269 * 180.02562 * 1 2 3 22 22 H 1.09007 * 109.46711 * 300.06342 * 1 2 3 23 23 H 1.09001 * 109.47221 * 60.05601 * 1 2 3 24 24 H 1.08994 * 109.58777 * 174.90071 * 4 2 1 25 25 H 1.09001 * 109.58510 * 54.46711 * 4 2 1 26 26 H 0.97004 * 119.99493 * 180.02562 * 9 8 6 27 27 H 1.09002 * 109.58355 * 293.81966 * 14 5 4 28 28 H 1.09006 * 109.58781 * 173.39494 * 14 5 4 29 29 H 1.08994 * 109.50203 * 65.32239 * 15 14 5 30 30 H 1.09008 * 109.49672 * 185.38357 * 15 14 5 31 31 H 0.96698 * 116.99996 * 179.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0413 -0.7234 -1.2499 5 7 1.6514 -2.1378 -1.1703 6 6 0.9637 -2.7307 -2.1953 7 1 0.3079 -3.5649 -1.9943 8 6 1.1094 -2.2595 -3.4929 9 7 2.1342 -1.4943 -3.8039 10 14 -0.1488 -2.7114 -4.7975 11 1 -1.2310 -1.6947 -4.8147 12 1 0.5108 -2.7548 -6.1274 13 1 -0.7263 -4.0439 -4.4878 14 6 2.0139 -2.9041 0.0298 15 6 1.5029 -2.1562 1.2652 16 6 2.0408 -0.7235 1.2489 17 1 3.1305 -0.7449 1.2358 18 6 1.5679 0.0044 2.4808 19 8 0.8910 0.9992 2.3722 20 8 1.8989 -0.4525 3.6988 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5149 0.8895 23 1 -0.3634 0.5130 -0.8905 24 1 3.1274 -0.6460 -1.2983 25 1 1.6006 -0.2725 -2.1390 26 1 2.2359 -1.1647 -4.7105 27 1 3.0978 -3.0044 0.0857 28 1 1.5552 -3.8919 -0.0151 29 1 0.4132 -2.1359 1.2534 30 1 1.8476 -2.6640 2.1662 31 1 1.5726 0.0481 4.4591 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306638794.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:25 Heat of formation + Delta-G solvation = -98.745284 kcal Electronic energy + Delta-G solvation = -15081.155635 eV Core-core repulsion = 12555.009036 eV Total energy + Delta-G solvation = -2526.146599 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.61429 -39.20946 -37.06241 -35.21156 -33.01690 -31.95488 -28.15868 -27.64419 -24.66812 -23.42753 -22.38907 -19.85008 -18.96252 -18.61716 -17.46012 -16.87496 -16.50119 -15.84086 -15.22451 -15.16266 -14.77948 -14.28803 -14.07886 -13.55135 -13.09734 -12.95759 -12.70045 -12.52237 -12.38374 -12.33886 -12.00197 -11.85768 -11.70713 -11.35711 -11.22067 -10.95380 -10.50649 -8.65272 -7.84892 -5.28396 1.26141 1.47501 1.49994 1.57363 2.20073 2.53227 3.30900 3.71114 3.74040 3.90369 4.19242 4.40193 4.52322 4.55399 4.77774 4.79854 4.94950 4.97774 5.07134 5.23951 5.30754 5.33575 5.42349 5.58023 5.67172 5.73152 5.74351 6.42288 7.09304 7.17833 7.89309 8.40274 9.21743 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.054429 B = 0.009070 C = 0.008668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.309491 B = 3086.375825 C = 3229.645978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.091 4.091 3 H 0.065 0.935 4 C 0.185 3.815 5 N -0.606 5.606 6 C -0.255 4.255 7 H 0.068 0.932 8 C -0.050 4.050 9 N -0.934 5.934 10 Si 0.960 3.040 11 H -0.290 1.290 12 H -0.296 1.296 13 H -0.268 1.268 14 C 0.141 3.859 15 C -0.113 4.113 16 C -0.067 4.067 17 H 0.112 0.888 18 C 0.493 3.507 19 O -0.541 6.541 20 O -0.507 6.507 21 H 0.051 0.949 22 H 0.063 0.937 23 H 0.032 0.968 24 H 0.003 0.997 25 H 0.057 0.943 26 H 0.249 0.751 27 H 0.025 0.975 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.096 0.904 31 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.519 0.723 12.673 12.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.112 4.112 3 H 0.083 0.917 4 C 0.059 3.941 5 N -0.329 5.329 6 C -0.385 4.385 7 H 0.085 0.915 8 C -0.245 4.245 9 N -0.580 5.580 10 Si 0.789 3.211 11 H -0.217 1.217 12 H -0.223 1.223 13 H -0.192 1.192 14 C 0.016 3.984 15 C -0.152 4.152 16 C -0.086 4.086 17 H 0.130 0.870 18 C 0.337 3.663 19 O -0.432 6.432 20 O -0.321 6.321 21 H 0.070 0.930 22 H 0.082 0.918 23 H 0.051 0.949 24 H 0.021 0.979 25 H 0.075 0.925 26 H 0.058 0.942 27 H 0.043 0.957 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.114 0.886 31 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -0.519 0.793 12.169 12.206 hybrid contribution -0.625 0.390 -0.664 0.991 sum -1.144 1.182 11.505 11.622 Atomic orbital electron populations 1.21761 0.95088 1.01294 1.00637 1.21522 0.96919 0.98244 0.94475 0.91657 1.20611 0.94960 0.83974 0.94585 1.44265 1.65345 1.06366 1.16929 1.19481 1.17752 1.14712 0.86553 0.91450 1.25709 0.98635 1.01238 0.98933 1.70167 1.29041 1.40001 1.18829 0.85366 0.78905 0.78248 0.78562 1.21667 1.22323 1.19232 1.21077 0.97002 0.94566 0.85766 1.21948 1.00931 0.92507 0.99796 1.20992 1.02657 0.96478 0.88477 0.87008 1.23590 0.75619 0.81860 0.85201 1.90636 1.37626 1.27353 1.87580 1.84519 1.72581 1.58264 1.16689 0.93001 0.91779 0.94861 0.97936 0.92453 0.94229 0.95675 0.91923 0.92040 0.88561 0.71384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.13 8.40 71.98 0.60 -4.53 16 2 C -0.09 -3.53 2.36 -10.69 -0.03 -3.56 16 3 H 0.07 2.48 8.07 -2.39 -0.02 2.46 16 4 C 0.18 8.79 4.70 86.36 0.41 9.20 16 5 N -0.61 -29.34 2.43 -699.09 -1.70 -31.04 16 6 C -0.25 -13.70 9.59 84.03 0.81 -12.89 16 7 H 0.07 3.53 7.89 -2.91 -0.02 3.51 16 8 C -0.05 -2.76 4.91 84.86 0.42 -2.35 16 9 N -0.93 -54.92 11.19 21.65 0.24 -54.68 16 10 Si 0.96 44.91 29.59 68.60 2.03 46.94 16 11 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 12 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 13 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 14 C 0.14 5.44 6.52 86.36 0.56 6.00 16 15 C -0.11 -3.50 4.95 30.67 0.15 -3.35 16 16 C -0.07 -2.12 2.37 -11.49 -0.03 -2.14 16 17 H 0.11 3.30 8.14 -2.39 -0.02 3.28 16 18 C 0.49 14.04 7.34 71.24 0.52 14.56 16 19 O -0.54 -18.32 14.51 21.99 0.32 -18.00 16 20 O -0.51 -10.36 13.30 -51.47 -0.68 -11.04 16 21 H 0.05 2.12 5.97 -2.39 -0.01 2.11 16 22 H 0.06 2.38 5.65 -2.38 -0.01 2.37 16 23 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 24 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 25 H 0.06 3.15 6.04 -2.39 -0.01 3.13 16 26 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 27 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.06 2.34 7.93 -2.38 -0.02 2.32 16 29 H 0.06 2.01 6.33 -2.39 -0.02 2.00 16 30 H 0.10 2.39 8.08 -2.38 -0.02 2.37 16 31 H 0.42 4.66 9.10 -74.06 -0.67 3.98 16 Total: -1.00 -64.85 249.43 4.08 -60.76 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: 0.46 Total: 6.13 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: 3.42 Total: 0.94 kcal Atomic # 7 Polarization: -84.26 SS G_CDS: -1.46 Total: -85.72 kcal Atomic # 8 Polarization: -28.68 SS G_CDS: -0.37 Total: -29.04 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -64.85 4.08 -60.76 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306638794.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.984 kcal (2) G-P(sol) polarization free energy of solvation -64.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds