Wall clock time and date at job start Sun Mar 29 2020 21:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.52206 * 2 1 4 4 C 1.53188 * 109.49796 * 120.07937 * 2 1 3 5 5 N 1.46925 * 108.77701 * 174.58785 * 4 2 1 6 6 C 1.36933 * 120.63218 * 126.36931 * 5 4 2 7 7 H 1.07998 * 120.00198 * 332.45537 * 6 5 4 8 8 C 1.38819 * 119.99952 * 152.17898 * 6 5 4 9 9 N 1.31617 * 120.00072 * 343.15781 * 8 6 5 10 10 Si 1.86804 * 119.99834 * 163.15974 * 8 6 5 11 11 H 1.48501 * 109.47135 * 359.97438 * 10 8 6 12 12 H 1.48493 * 109.46995 * 120.00274 * 10 8 6 13 13 H 1.48504 * 109.46877 * 240.00049 * 10 8 6 14 14 C 1.46933 * 118.73707 * 306.64093 * 5 4 2 15 15 C 1.52758 * 109.00408 * 53.31408 * 14 5 4 16 16 C 1.53043 * 109.49808 * 239.92018 * 2 1 3 17 17 H 1.08997 * 109.46089 * 298.70160 * 16 2 1 18 18 C 1.50696 * 109.46124 * 58.66301 * 16 2 1 19 19 O 1.20827 * 119.99798 * 0.02562 * 18 16 2 20 20 O 1.34229 * 119.99848 * 179.97438 * 18 16 2 21 21 H 1.08997 * 109.47401 * 299.92231 * 1 2 3 22 22 H 1.09001 * 109.47197 * 59.91766 * 1 2 3 23 23 H 1.08997 * 109.47356 * 179.91687 * 1 2 3 24 24 H 1.09000 * 109.58790 * 54.80177 * 4 2 1 25 25 H 1.09000 * 109.58897 * 294.37524 * 4 2 1 26 26 H 0.97002 * 120.00067 * 179.97438 * 9 8 6 27 27 H 1.09000 * 109.58175 * 173.14238 * 14 5 4 28 28 H 1.08993 * 109.58871 * 293.56927 * 14 5 4 29 29 H 1.09006 * 109.56332 * 185.55045 * 15 14 5 30 30 H 1.08994 * 109.39241 * 65.51309 * 15 14 5 31 31 H 0.96709 * 116.99621 * 179.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0413 -0.7237 1.2496 5 7 3.5046 -0.8291 1.1696 6 6 4.2935 -0.3784 2.1941 7 1 3.9457 0.4203 2.8324 8 6 5.5381 -0.9521 2.4157 9 7 5.8290 -2.1196 1.8822 10 14 6.7998 -0.0670 3.4712 11 1 6.2310 1.2189 3.9490 12 1 7.1531 -0.9162 4.6370 13 1 8.0187 0.2002 2.6660 14 6 4.1055 -1.4216 -0.0332 15 6 3.5709 -0.6950 -1.2659 16 6 2.0408 -0.7231 -1.2484 17 1 1.6967 -1.7572 -1.2353 18 6 1.5118 -0.0337 -2.4796 19 8 0.7999 0.9364 -2.3700 20 8 1.8323 -0.4969 -3.6980 21 1 -0.3634 0.5126 0.8906 22 1 -0.3634 0.5151 -0.8893 23 1 -0.3634 -1.0276 -0.0015 24 1 1.6053 -1.7216 1.2980 25 1 1.7637 -0.1579 2.1389 26 1 6.6987 -2.5203 2.0368 27 1 5.1895 -1.3159 0.0101 28 1 3.8413 -2.4774 -0.0914 29 1 3.9335 -1.1897 -2.1671 30 1 3.9159 0.3388 -1.2546 31 1 1.4688 -0.0218 -4.4579 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306638795.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:28 Heat of formation + Delta-G solvation = -81.993307 kcal Electronic energy + Delta-G solvation = -14895.700607 eV Core-core repulsion = 12370.280428 eV Total energy + Delta-G solvation = -2525.420179 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.31990 -37.53322 -35.91267 -33.57179 -31.39590 -30.60974 -26.48848 -25.63321 -23.05018 -21.57597 -20.66278 -19.06592 -17.76474 -16.75305 -16.31180 -15.30944 -14.79941 -14.02210 -13.74496 -13.40161 -13.25786 -12.78708 -12.44939 -11.94495 -11.56330 -11.34530 -11.20026 -11.07482 -10.87331 -10.68815 -10.26636 -10.21414 -10.08274 -9.88764 -9.61658 -9.39705 -8.48680 -6.70043 -5.80655 -3.22863 2.47049 3.33473 3.37598 3.45150 3.47650 4.48732 5.07607 5.27533 5.37871 5.48970 5.54990 5.73860 5.82295 6.10750 6.11342 6.30950 6.33349 6.48200 6.54837 6.55334 6.67570 6.80804 6.85379 7.01689 7.30688 7.60500 7.79230 8.15167 8.43015 9.19443 9.82531 10.38776 11.28215 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.047495 B = 0.008783 C = 0.008104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.393200 B = 3187.378820 C = 3454.269937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.091 4.091 3 H 0.074 0.926 4 C 0.153 3.847 5 N -0.594 5.594 6 C -0.252 4.252 7 H 0.067 0.933 8 C 0.002 3.998 9 N -0.903 5.903 10 Si 0.902 3.098 11 H -0.277 1.277 12 H -0.290 1.290 13 H -0.289 1.289 14 C 0.171 3.829 15 C -0.132 4.132 16 C -0.066 4.066 17 H 0.100 0.900 18 C 0.482 3.518 19 O -0.519 6.519 20 O -0.518 6.518 21 H 0.052 0.948 22 H 0.073 0.927 23 H 0.045 0.955 24 H 0.021 0.979 25 H 0.059 0.941 26 H 0.253 0.747 27 H 0.093 0.907 28 H 0.022 0.978 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.884 1.838 -7.779 10.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.111 4.111 3 H 0.092 0.908 4 C 0.026 3.974 5 N -0.316 5.316 6 C -0.382 4.382 7 H 0.085 0.915 8 C -0.197 4.197 9 N -0.547 5.547 10 Si 0.732 3.268 11 H -0.202 1.202 12 H -0.217 1.217 13 H -0.216 1.216 14 C 0.045 3.955 15 C -0.172 4.172 16 C -0.085 4.085 17 H 0.118 0.882 18 C 0.325 3.675 19 O -0.407 6.407 20 O -0.329 6.329 21 H 0.071 0.929 22 H 0.091 0.909 23 H 0.064 0.936 24 H 0.039 0.961 25 H 0.077 0.923 26 H 0.064 0.936 27 H 0.111 0.889 28 H 0.040 0.960 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -6.749 1.793 -7.351 10.139 hybrid contribution 0.429 0.685 -0.064 0.811 sum -6.319 2.478 -7.416 10.053 Atomic orbital electron populations 1.22068 0.95630 1.01145 1.02748 1.21579 0.94878 1.00314 0.94373 0.90777 1.20970 0.85699 0.96614 0.94121 1.44096 0.99438 1.71657 1.16412 1.19247 0.98251 1.12315 1.08367 0.91530 1.25046 0.99932 0.95389 0.99299 1.70032 1.21890 1.14783 1.48034 0.86225 0.81617 0.79234 0.79729 1.20233 1.21708 1.21554 1.20721 0.99647 0.93105 0.82002 1.22200 0.90899 1.02451 1.01630 1.21145 0.98783 1.00259 0.88337 0.88165 1.24164 0.76528 0.82097 0.84691 1.90597 1.35974 1.27150 1.87027 1.84619 1.71598 1.59721 1.16966 0.92918 0.90864 0.93601 0.96144 0.92258 0.93645 0.88928 0.95970 0.91835 0.92201 0.74225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.49 8.86 37.16 0.33 -2.16 16 2 C -0.09 -1.65 2.06 -90.50 -0.19 -1.84 16 3 H 0.07 1.47 8.13 -51.93 -0.42 1.05 16 4 C 0.15 3.18 5.80 -3.71 -0.02 3.16 16 5 N -0.59 -14.73 3.00 -172.58 -0.52 -15.25 16 6 C -0.25 -6.88 9.58 -15.06 -0.14 -7.03 16 7 H 0.07 1.79 7.88 -52.49 -0.41 1.38 16 8 C 0.00 0.05 4.92 -17.43 -0.09 -0.04 16 9 N -0.90 -25.85 11.18 55.49 0.62 -25.23 16 10 Si 0.90 21.57 29.59 -169.99 -5.03 16.54 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 14 C 0.17 3.98 5.28 -3.93 -0.02 3.96 16 15 C -0.13 -2.50 5.28 -26.83 -0.14 -2.64 16 16 C -0.07 -1.13 2.14 -91.73 -0.20 -1.33 16 17 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 18 C 0.48 7.63 7.33 36.00 0.26 7.89 16 19 O -0.52 -9.16 14.33 -18.75 -0.27 -9.43 16 20 O -0.52 -6.63 13.30 -39.25 -0.52 -7.15 16 21 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 22 H 0.07 1.20 5.41 -51.93 -0.28 0.91 16 23 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.06 1.22 7.93 -51.93 -0.41 0.81 16 26 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 27 H 0.09 2.41 6.05 -51.93 -0.31 2.10 16 28 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 1.08 8.08 -51.93 -0.42 0.66 16 30 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 31 H 0.40 3.19 9.10 45.56 0.41 3.61 16 LS Contribution 253.74 15.07 3.82 3.82 Total: -1.00 -30.45 253.74 -5.62 -36.07 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -3.52 Total: 0.65 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: -0.20 Total: -0.02 kcal Atomic # 7 Polarization: -40.58 SS G_CDS: 0.10 Total: -40.48 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: -0.79 Total: -16.58 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.54 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -30.45 -5.62 -36.07 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306638795.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.927 kcal (2) G-P(sol) polarization free energy of solvation -30.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds